Wall clock time and date at job start Mon Mar 8 2021 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47413 * 2 1 4 4 C 1.50703 * 109.47047 * 239.99667 * 2 1 3 5 5 C 1.38725 * 120.00267 * 285.00202 * 4 2 1 6 6 O 1.35899 * 120.04316 * 0.02562 * 5 4 2 7 7 C 1.42902 * 116.99835 * 179.72060 * 6 5 4 8 8 C 1.52995 * 109.47203 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47222 * 180.02562 * 8 7 6 10 10 O 1.42968 * 109.46853 * 300.00081 * 8 7 6 11 11 C 1.43090 * 113.77067 * 178.79299 * 10 8 7 12 12 C 1.53255 * 108.94393 * 302.03213 * 11 10 8 13 13 H 1.09002 * 109.67584 * 294.64819 * 12 11 10 14 14 N 1.46500 * 109.57508 * 174.33103 * 12 11 10 15 15 C 1.34532 * 124.46175 * 120.63897 * 14 12 11 16 16 O 1.21444 * 125.70665 * 0.24100 * 15 14 12 17 17 C 1.47816 * 108.57928 * 179.97438 * 15 14 12 18 18 C 1.40943 * 105.87967 * 0.02562 * 17 15 14 19 19 C 1.38567 * 119.81298 * 180.02562 * 18 17 15 20 20 C 1.38614 * 119.72397 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.45634 * 0.02562 * 20 19 18 22 22 C 1.38573 * 134.29139 * 179.97438 * 17 15 14 23 23 C 1.34529 * 124.46160 * 300.61506 * 14 12 11 24 24 O 1.21439 * 125.70498 * 0.03806 * 23 14 12 25 25 C 1.53251 * 108.84656 * 54.52236 * 12 11 10 26 26 O 1.42967 * 109.47428 * 59.99694 * 8 7 6 27 27 C 1.38710 * 119.91306 * 179.74578 * 5 4 2 28 28 C 1.38352 * 119.91942 * 0.25144 * 27 5 4 29 29 F 1.35100 * 119.99548 * 179.97438 * 28 27 5 30 30 C 1.38520 * 120.00373 * 0.02566 * 28 27 5 31 31 C 1.38176 * 119.99843 * 105.25612 * 4 2 1 32 32 H 0.96699 * 113.99624 * 59.99549 * 1 2 3 33 33 H 1.09004 * 109.46625 * 120.00174 * 2 1 3 34 34 H 1.48498 * 110.00007 * 298.67971 * 3 2 1 35 35 H 1.48500 * 109.99803 * 59.99943 * 3 2 1 36 36 H 1.08998 * 109.47320 * 59.99733 * 7 6 5 37 37 H 1.09006 * 109.46913 * 300.00370 * 7 6 5 38 38 H 1.09006 * 109.56146 * 182.18674 * 11 10 8 39 39 H 1.09007 * 109.55446 * 61.87193 * 11 10 8 40 40 H 1.08005 * 120.13694 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.77202 * 180.02562 * 20 19 18 42 42 H 1.08004 * 119.76717 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.14059 * 0.02562 * 22 17 15 44 44 H 1.09000 * 109.55948 * 65.31611 * 25 12 11 45 45 H 1.08999 * 109.56036 * 185.63806 * 25 12 11 46 46 H 1.07995 * 120.04098 * 180.23805 * 27 5 4 47 47 H 1.07997 * 119.95580 * 179.97438 * 30 28 27 48 48 H 1.07998 * 119.96635 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8694 -2.0943 -1.3063 6 8 1.3553 -2.8101 -0.2718 7 6 1.3171 -4.2307 -0.4215 8 6 0.7103 -4.8597 0.8342 9 1 0.6815 -5.9433 0.7202 10 8 1.5094 -4.5216 1.9704 11 6 1.0071 -5.0429 3.2046 12 6 -0.4188 -4.5242 3.4202 13 1 -0.3997 -3.4425 3.5536 14 7 -0.9962 -5.1553 4.6095 15 6 -1.4355 -4.4846 5.6898 16 8 -1.4204 -3.2784 5.8298 17 6 -1.9456 -5.4612 6.6752 18 6 -1.7683 -6.7301 6.0879 19 6 -2.1565 -7.8683 6.7764 20 6 -2.7163 -7.7503 8.0389 21 6 -2.8901 -6.5058 8.6149 22 6 -2.5058 -5.3586 7.9385 23 6 -1.1573 -6.4818 4.7651 24 8 -0.8513 -7.3328 3.9545 25 6 -1.2643 -4.8751 2.1911 26 8 -0.6177 -4.3644 1.0212 27 6 2.3274 -2.7460 -2.4419 28 6 2.8496 -2.0147 -3.4938 29 9 3.2967 -2.6479 -4.6004 30 6 2.9152 -0.6335 -3.4121 31 6 2.4585 0.0161 -2.2809 32 1 -0.3933 0.4418 -0.7650 33 1 1.7923 -0.5139 0.8900 34 1 1.5880 2.4585 -1.2242 35 1 1.5616 2.4678 1.2085 36 1 2.3296 -4.6084 -0.5645 37 1 0.7075 -4.4885 -1.2876 38 1 1.6434 -4.7133 4.0260 39 1 0.9969 -6.1321 3.1634 40 1 -2.0235 -8.8432 6.3311 41 1 -3.0188 -8.6369 8.5764 42 1 -3.3278 -6.4268 9.5991 43 1 -2.6434 -4.3890 8.3935 44 1 -1.3607 -5.9579 2.1115 45 1 -2.2526 -4.4254 2.2875 46 1 2.2766 -3.8229 -2.5047 47 1 3.3234 -0.0634 -4.2336 48 1 2.5106 1.0930 -2.2194 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10564890_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:51:24 Heat of formation + Delta-G solvation = -159.742994 kcal Electronic energy + Delta-G solvation = -40082.433474 eV Core-core repulsion = 34565.312100 eV Total energy + Delta-G solvation = -5517.121374 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.124 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.89755 -43.67222 -41.58684 -40.96291 -39.81463 -39.61620 -38.61896 -37.38689 -37.08043 -36.94752 -34.57002 -32.48077 -32.36882 -31.98706 -30.99406 -29.65546 -27.39237 -26.43417 -26.34278 -25.61736 -24.70474 -23.56108 -23.28489 -22.57558 -22.27462 -21.01173 -19.76508 -19.04244 -19.01045 -18.77574 -18.40553 -17.92574 -17.69764 -17.57249 -17.28462 -17.05982 -16.91500 -16.59542 -16.37300 -16.30451 -16.23256 -16.05648 -16.03381 -15.74465 -15.61444 -15.24892 -15.23373 -15.17491 -15.16209 -14.65490 -14.58668 -14.53823 -14.11205 -13.98365 -13.55523 -13.53908 -13.36404 -13.02268 -12.85211 -12.59207 -12.57013 -12.37226 -12.10648 -12.06600 -11.96108 -11.69817 -11.58889 -11.54398 -10.86121 -10.75216 -10.45517 -10.43832 -10.42207 -9.98740 -9.26194 -4.90627 -1.16550 -0.26256 -0.01391 0.23159 0.80914 0.92988 1.35332 1.60887 1.67945 1.94756 2.02909 2.26300 2.32807 2.37762 2.38640 2.44736 3.06850 3.15355 3.22926 3.32408 3.36388 3.48494 3.54331 3.62000 3.68806 3.75863 3.78854 3.80955 3.86257 3.95435 3.96346 4.00446 4.03640 4.04128 4.14168 4.16402 4.19279 4.34056 4.36316 4.50855 4.53858 4.62897 4.65739 4.70727 4.88925 4.93468 4.97202 4.98865 5.10933 5.19492 5.33521 5.41420 5.49069 5.63291 5.82226 5.98395 6.25258 6.42909 6.57978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.519 6.519 2 C -0.061 4.061 3 Si 0.686 3.314 4 C -0.160 4.160 5 C 0.187 3.813 6 O -0.275 6.275 7 C 0.072 3.928 8 C 0.246 3.754 9 H 0.086 0.914 10 O -0.369 6.369 11 C 0.049 3.951 12 C 0.075 3.925 13 H 0.130 0.870 14 N -0.570 5.570 15 C 0.575 3.425 16 O -0.451 6.451 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.042 4.042 20 C -0.094 4.094 21 C -0.092 4.092 22 C -0.042 4.042 23 C 0.576 3.424 24 O -0.460 6.460 25 C 0.049 3.951 26 O -0.366 6.366 27 C -0.252 4.252 28 C 0.148 3.852 29 F -0.134 7.134 30 C -0.188 4.188 31 C -0.054 4.054 32 H 0.371 0.629 33 H 0.119 0.881 34 H -0.259 1.259 35 H -0.256 1.256 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -3.612 3.999 5.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.325 6.325 2 C -0.171 4.171 3 Si 0.588 3.412 4 C -0.161 4.161 5 C 0.140 3.860 6 O -0.186 6.186 7 C -0.003 4.003 8 C 0.151 3.849 9 H 0.103 0.897 10 O -0.288 6.288 11 C -0.029 4.029 12 C -0.027 4.027 13 H 0.148 0.852 14 N -0.316 5.316 15 C 0.364 3.636 16 O -0.321 6.321 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.060 4.060 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.061 4.061 23 C 0.366 3.634 24 O -0.331 6.331 25 C -0.029 4.029 26 O -0.285 6.285 27 C -0.272 4.272 28 C 0.129 3.871 29 F -0.112 7.112 30 C -0.207 4.207 31 C -0.072 4.072 32 H 0.217 0.783 33 H 0.137 0.863 34 H -0.184 1.184 35 H -0.181 1.181 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.084 -2.558 4.087 4.822 hybrid contribution -1.048 -0.904 -0.758 1.578 sum -1.132 -3.462 3.329 4.934 Atomic orbital electron populations 1.86699 1.17444 1.79623 1.48712 1.24855 0.84068 1.10174 0.98000 0.95141 0.91457 0.74491 0.80128 1.19687 1.06550 0.90994 0.98867 1.18462 0.90828 0.90693 0.85986 1.86331 1.76486 1.18227 1.37575 1.22944 1.01725 0.79769 0.95905 1.23579 0.78796 0.96249 0.86288 0.89689 1.88249 1.49088 1.76756 1.14710 1.23018 0.92772 0.99341 0.87750 1.22658 0.95009 1.01242 0.83801 0.85165 1.46463 1.58113 1.08767 1.18211 1.18420 0.76265 0.87427 0.81452 1.90863 1.50374 1.13065 1.77793 1.20478 1.03797 0.93503 0.96535 1.20466 1.03845 0.95154 0.95177 1.20856 0.93988 0.97672 0.93519 1.21557 0.96588 0.98676 0.94353 1.21560 0.97339 0.91688 1.00430 1.20870 0.93644 1.00268 0.91310 1.18452 0.76817 0.81461 0.86708 1.90809 1.46672 1.47932 1.47696 1.23010 0.96514 1.00313 0.83036 1.88286 1.27295 1.70546 1.42390 1.21201 1.09741 1.01330 0.94893 1.17409 0.96195 0.90526 0.83019 1.91539 1.86563 1.82436 1.50660 1.21013 1.06538 0.92421 1.00697 1.20858 0.94773 1.00181 0.91379 0.78250 0.86281 1.18431 1.18075 0.89042 0.89141 0.87232 0.90738 0.83808 0.83711 0.83695 0.83750 0.90830 0.87289 0.84026 0.84072 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.69 12.88 -35.23 -0.45 -2.15 16 2 C -0.06 -0.10 2.38 36.01 0.09 -0.01 16 3 Si 0.69 -0.12 30.24 -169.99 -5.14 -5.26 16 4 C -0.16 -0.23 5.27 -104.46 -0.55 -0.78 16 5 C 0.19 0.42 6.66 -39.23 -0.26 0.15 16 6 O -0.27 -0.84 9.25 -39.90 -0.37 -1.20 16 7 C 0.07 0.02 4.83 37.15 0.18 0.20 16 8 C 0.25 0.30 3.59 37.15 0.13 0.44 16 9 H 0.09 -0.07 8.14 -51.93 -0.42 -0.50 16 10 O -0.37 -0.89 10.43 -63.56 -0.66 -1.55 16 11 C 0.05 0.05 6.32 37.29 0.24 0.29 16 12 C 0.07 0.12 3.08 -67.67 -0.21 -0.09 16 13 H 0.13 0.36 7.59 -51.93 -0.39 -0.04 16 14 N -0.57 -0.79 2.53 -110.23 -0.28 -1.07 16 15 C 0.58 1.22 8.02 -12.45 -0.10 1.12 16 16 O -0.45 -2.17 17.44 5.41 0.09 -2.07 16 17 C -0.14 -0.02 6.40 -104.83 -0.67 -0.69 16 18 C -0.14 0.01 6.40 -104.84 -0.67 -0.66 16 19 C -0.04 0.09 10.09 -39.32 -0.40 -0.31 16 20 C -0.09 0.35 10.04 -39.44 -0.40 -0.04 16 21 C -0.09 0.34 10.03 -39.45 -0.40 -0.06 16 22 C -0.04 0.08 10.09 -39.32 -0.40 -0.32 16 23 C 0.58 0.77 7.35 -12.46 -0.09 0.68 16 24 O -0.46 -1.33 15.16 5.42 0.08 -1.25 16 25 C 0.05 0.07 6.33 37.29 0.24 0.31 16 26 O -0.37 -1.07 10.43 -63.56 -0.66 -1.73 16 27 C -0.25 -0.33 9.02 -39.37 -0.35 -0.69 16 28 C 0.15 0.26 7.30 -39.44 -0.29 -0.03 16 29 F -0.13 -0.36 17.27 2.25 0.04 -0.32 16 30 C -0.19 -0.09 10.02 -39.49 -0.40 -0.48 16 31 C -0.05 0.00 8.65 -39.62 -0.34 -0.34 16 32 H 0.37 0.01 8.70 45.56 0.40 0.40 16 33 H 0.12 0.27 7.83 -51.93 -0.41 -0.14 16 34 H -0.26 -0.21 6.69 56.52 0.38 0.16 16 35 H -0.26 -0.84 7.11 56.52 0.40 -0.44 16 36 H 0.09 -0.14 7.66 -51.93 -0.40 -0.54 16 37 H 0.09 -0.11 7.66 -51.93 -0.40 -0.50 16 38 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 0.08 6.65 -51.92 -0.35 -0.27 16 40 H 0.14 -0.51 8.06 -52.48 -0.42 -0.94 16 41 H 0.15 -0.90 8.06 -52.49 -0.42 -1.32 16 42 H 0.15 -0.88 8.06 -52.48 -0.42 -1.30 16 43 H 0.14 -0.45 8.06 -52.49 -0.42 -0.87 16 44 H 0.07 0.09 6.69 -51.93 -0.35 -0.25 16 45 H 0.11 0.10 8.14 -51.93 -0.42 -0.32 16 46 H 0.14 -0.07 6.30 -52.49 -0.33 -0.40 16 47 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 48 H 0.14 -0.26 4.85 -52.49 -0.25 -0.51 16 LS Contribution 409.96 15.07 6.18 6.18 Total: 0.00 -9.62 409.96 -10.91 -20.52 By element: Atomic # 1 Polarization: -3.70 SS G_CDS: -5.08 Total: -8.78 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -4.65 Total: -1.30 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -0.28 Total: -1.07 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.97 Total: -9.96 kcal Atomic # 9 Polarization: -0.36 SS G_CDS: 0.04 Total: -0.32 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: -5.14 Total: -5.26 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -9.62 -10.91 -20.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.220 kcal (2) G-P(sol) polarization free energy of solvation -9.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds