Wall clock time and date at job start Mon Mar 8 2021 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.47413 * 2 1 4 4 C 1.50703 * 109.47047 * 239.99667 * 2 1 3 5 5 C 1.38725 * 120.00267 * 285.00202 * 4 2 1 6 6 O 1.35899 * 120.04316 * 0.02562 * 5 4 2 7 7 C 1.42902 * 116.99835 * 179.72060 * 6 5 4 8 8 C 1.52995 * 109.47203 * 180.02562 * 7 6 5 9 9 H 1.08996 * 109.47222 * 180.02562 * 8 7 6 10 10 O 1.42968 * 109.46853 * 300.00081 * 8 7 6 11 11 C 1.43090 * 113.77067 * 178.79299 * 10 8 7 12 12 C 1.53255 * 108.94393 * 302.03213 * 11 10 8 13 13 H 1.09002 * 109.67584 * 294.64819 * 12 11 10 14 14 N 1.46500 * 109.57508 * 174.33103 * 12 11 10 15 15 C 1.34532 * 124.46175 * 120.63897 * 14 12 11 16 16 O 1.21444 * 125.70665 * 0.24100 * 15 14 12 17 17 C 1.47816 * 108.57928 * 179.97438 * 15 14 12 18 18 C 1.40943 * 105.87967 * 0.02562 * 17 15 14 19 19 C 1.38567 * 119.81298 * 180.02562 * 18 17 15 20 20 C 1.38614 * 119.72397 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.45634 * 0.02562 * 20 19 18 22 22 C 1.38573 * 134.29139 * 179.97438 * 17 15 14 23 23 C 1.34529 * 124.46160 * 300.61506 * 14 12 11 24 24 O 1.21439 * 125.70498 * 0.03806 * 23 14 12 25 25 C 1.53251 * 108.84656 * 54.52236 * 12 11 10 26 26 O 1.42967 * 109.47428 * 59.99694 * 8 7 6 27 27 C 1.38710 * 119.91306 * 179.74578 * 5 4 2 28 28 C 1.38352 * 119.91942 * 0.25144 * 27 5 4 29 29 F 1.35100 * 119.99548 * 179.97438 * 28 27 5 30 30 C 1.38520 * 120.00373 * 0.02566 * 28 27 5 31 31 C 1.38176 * 119.99843 * 105.25612 * 4 2 1 32 32 H 0.96699 * 113.99624 * 59.99549 * 1 2 3 33 33 H 1.09004 * 109.46625 * 120.00174 * 2 1 3 34 34 H 1.48498 * 110.00007 * 298.67971 * 3 2 1 35 35 H 1.48500 * 109.99803 * 59.99943 * 3 2 1 36 36 H 1.08998 * 109.47320 * 59.99733 * 7 6 5 37 37 H 1.09006 * 109.46913 * 300.00370 * 7 6 5 38 38 H 1.09006 * 109.56146 * 182.18674 * 11 10 8 39 39 H 1.09007 * 109.55446 * 61.87193 * 11 10 8 40 40 H 1.08005 * 120.13694 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.77202 * 180.02562 * 20 19 18 42 42 H 1.08004 * 119.76717 * 179.97438 * 21 20 19 43 43 H 1.07993 * 120.14059 * 0.02562 * 22 17 15 44 44 H 1.09000 * 109.55948 * 65.31611 * 25 12 11 45 45 H 1.08999 * 109.56036 * 185.63806 * 25 12 11 46 46 H 1.07995 * 120.04098 * 180.23805 * 27 5 4 47 47 H 1.07997 * 119.95580 * 179.97438 * 30 28 27 48 48 H 1.07998 * 119.96635 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8694 -2.0943 -1.3063 6 8 1.3553 -2.8101 -0.2718 7 6 1.3171 -4.2307 -0.4215 8 6 0.7103 -4.8597 0.8342 9 1 0.6815 -5.9433 0.7202 10 8 1.5094 -4.5216 1.9704 11 6 1.0071 -5.0429 3.2046 12 6 -0.4188 -4.5242 3.4202 13 1 -0.3997 -3.4425 3.5536 14 7 -0.9962 -5.1553 4.6095 15 6 -1.4355 -4.4846 5.6898 16 8 -1.4204 -3.2784 5.8298 17 6 -1.9456 -5.4612 6.6752 18 6 -1.7683 -6.7301 6.0879 19 6 -2.1565 -7.8683 6.7764 20 6 -2.7163 -7.7503 8.0389 21 6 -2.8901 -6.5058 8.6149 22 6 -2.5058 -5.3586 7.9385 23 6 -1.1573 -6.4818 4.7651 24 8 -0.8513 -7.3328 3.9545 25 6 -1.2643 -4.8751 2.1911 26 8 -0.6177 -4.3644 1.0212 27 6 2.3274 -2.7460 -2.4419 28 6 2.8496 -2.0147 -3.4938 29 9 3.2967 -2.6479 -4.6004 30 6 2.9152 -0.6335 -3.4121 31 6 2.4585 0.0161 -2.2809 32 1 -0.3933 0.4418 -0.7650 33 1 1.7923 -0.5139 0.8900 34 1 1.5880 2.4585 -1.2242 35 1 1.5616 2.4678 1.2085 36 1 2.3296 -4.6084 -0.5645 37 1 0.7075 -4.4885 -1.2876 38 1 1.6434 -4.7133 4.0260 39 1 0.9969 -6.1321 3.1634 40 1 -2.0235 -8.8432 6.3311 41 1 -3.0188 -8.6369 8.5764 42 1 -3.3278 -6.4268 9.5991 43 1 -2.6434 -4.3890 8.3935 44 1 -1.3607 -5.9579 2.1115 45 1 -2.2526 -4.4254 2.2875 46 1 2.2766 -3.8229 -2.5047 47 1 3.3234 -0.0634 -4.2336 48 1 2.5106 1.0930 -2.2194 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10564890_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:51:22 Heat of formation + Delta-G solvation = -158.605368 kcal Electronic energy + Delta-G solvation = -40082.384143 eV Core-core repulsion = 34565.312100 eV Total energy + Delta-G solvation = -5517.072043 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.124 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -50.03222 -43.74517 -41.67653 -41.05745 -39.99240 -39.52368 -38.72105 -37.54399 -37.24374 -37.12007 -34.59627 -32.56078 -32.18983 -31.99735 -31.02537 -29.70885 -27.53924 -26.54759 -26.38609 -25.61284 -24.72477 -23.52313 -23.32934 -22.65301 -22.31364 -21.04975 -19.85450 -19.17990 -19.01493 -18.89761 -18.50993 -18.03620 -17.70183 -17.68696 -17.36843 -17.11261 -17.02761 -16.65831 -16.48351 -16.41642 -16.33985 -16.18890 -15.94372 -15.87264 -15.51838 -15.36803 -15.32837 -15.24686 -15.09362 -14.81656 -14.71625 -14.64083 -14.22444 -13.83626 -13.68504 -13.41423 -13.31155 -13.12043 -12.73049 -12.67992 -12.63661 -12.49927 -12.28244 -12.18831 -12.02187 -11.73585 -11.70250 -11.65886 -11.00073 -10.89755 -10.56398 -10.28514 -10.27275 -10.05241 -9.34619 -4.92400 -1.14641 -0.08878 -0.08678 0.17325 0.83723 0.85588 1.29474 1.55938 1.58015 1.90834 1.96840 2.15605 2.24752 2.38195 2.41363 2.54633 3.03506 3.07723 3.11678 3.18408 3.41639 3.46356 3.50884 3.58759 3.63281 3.72296 3.77236 3.87047 3.94330 3.97787 3.99928 4.01770 4.07025 4.12302 4.12792 4.18220 4.22506 4.31524 4.37554 4.42431 4.50335 4.57574 4.78071 4.85153 4.86717 4.90209 5.06513 5.14872 5.15968 5.22626 5.30897 5.38014 5.59284 5.63057 5.69817 5.88581 6.19188 6.30649 6.54632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.078 4.078 3 Si 0.779 3.221 4 C -0.167 4.167 5 C 0.171 3.829 6 O -0.298 6.298 7 C 0.066 3.934 8 C 0.238 3.762 9 H 0.107 0.893 10 O -0.383 6.383 11 C 0.053 3.947 12 C 0.077 3.923 13 H 0.112 0.888 14 N -0.570 5.570 15 C 0.574 3.426 16 O -0.491 6.491 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.041 4.041 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.045 4.045 23 C 0.577 3.423 24 O -0.480 6.480 25 C 0.053 3.947 26 O -0.385 6.385 27 C -0.253 4.253 28 C 0.132 3.868 29 F -0.141 7.141 30 C -0.184 4.184 31 C -0.049 4.049 32 H 0.382 0.618 33 H 0.103 0.897 34 H -0.260 1.260 35 H -0.307 1.307 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.177 0.823 43 H 0.152 0.848 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.155 0.845 47 H 0.161 0.839 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -4.595 4.583 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.185 4.185 3 Si 0.682 3.318 4 C -0.168 4.168 5 C 0.124 3.876 6 O -0.210 6.210 7 C -0.008 4.008 8 C 0.144 3.856 9 H 0.124 0.876 10 O -0.303 6.303 11 C -0.024 4.024 12 C -0.026 4.026 13 H 0.130 0.870 14 N -0.314 5.314 15 C 0.366 3.634 16 O -0.363 6.363 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.060 4.060 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.064 4.064 23 C 0.368 3.632 24 O -0.353 6.353 25 C -0.025 4.025 26 O -0.304 6.304 27 C -0.272 4.272 28 C 0.112 3.888 29 F -0.120 7.120 30 C -0.203 4.203 31 C -0.066 4.066 32 H 0.231 0.769 33 H 0.121 0.879 34 H -0.186 1.186 35 H -0.235 1.235 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.194 0.806 43 H 0.170 0.830 44 H 0.095 0.905 45 H 0.127 0.873 46 H 0.173 0.827 47 H 0.179 0.821 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.217 -3.585 4.646 5.873 hybrid contribution -1.071 -0.669 -0.831 1.512 sum -1.288 -4.254 3.815 5.858 Atomic orbital electron populations 1.86656 1.18638 1.80333 1.49700 1.25180 0.83430 1.12219 0.97693 0.94090 0.89864 0.70864 0.76982 1.19814 1.06801 0.91010 0.99161 1.18658 0.91572 0.91148 0.86229 1.86300 1.76899 1.19507 1.38328 1.23178 1.03015 0.78760 0.95893 1.23922 0.78002 0.97477 0.86214 0.87571 1.88224 1.49556 1.77172 1.15317 1.23005 0.92422 0.99347 0.87648 1.22549 0.95583 1.00256 0.84168 0.87031 1.46484 1.57902 1.09059 1.17976 1.18843 0.75443 0.87283 0.81878 1.90829 1.52292 1.14608 1.78605 1.20422 1.05835 0.92689 0.97367 1.20445 1.05362 0.95928 0.94508 1.21177 0.93289 0.97460 0.94068 1.21981 0.94769 0.99874 0.93448 1.21960 0.95958 0.90875 1.01293 1.21161 0.92997 1.01669 0.90530 1.18730 0.76290 0.80957 0.87216 1.90785 1.47754 1.48206 1.48517 1.22981 0.96403 1.00357 0.82711 1.88257 1.28231 1.71173 1.42761 1.21321 1.09273 1.02127 0.94473 1.17619 0.96953 0.91209 0.82978 1.91517 1.86777 1.82675 1.51027 1.21276 1.05724 0.92064 1.01234 1.21038 0.93919 1.01070 0.90609 0.76892 0.87859 1.18617 1.23530 0.87203 0.87784 0.86837 0.90425 0.82493 0.80481 0.80611 0.82993 0.90470 0.87343 0.82732 0.82105 0.81751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.60 12.88 -148.98 -1.92 -6.52 16 2 C -0.08 -0.36 2.38 71.24 0.17 -0.19 16 3 Si 0.78 -0.13 30.24 68.60 2.07 1.94 16 4 C -0.17 -0.59 5.27 -19.76 -0.10 -0.70 16 5 C 0.17 0.94 6.66 22.50 0.15 1.09 16 6 O -0.30 -2.35 9.25 -72.83 -0.67 -3.02 16 7 C 0.07 0.11 4.83 71.98 0.35 0.46 16 8 C 0.24 0.94 3.59 71.98 0.26 1.20 16 9 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 10 O -0.38 -2.61 10.43 -121.89 -1.27 -3.88 16 11 C 0.05 0.24 6.32 72.07 0.46 0.69 16 12 C 0.08 0.46 3.08 45.16 0.14 0.60 16 13 H 0.11 1.07 7.59 -2.39 -0.02 1.05 16 14 N -0.57 -3.02 2.53 -739.58 -1.87 -4.89 16 15 C 0.57 3.94 8.02 86.82 0.70 4.64 16 16 O -0.49 -6.34 17.44 -3.54 -0.06 -6.40 16 17 C -0.16 -0.23 6.40 -20.00 -0.13 -0.35 16 18 C -0.16 -0.07 6.40 -20.00 -0.13 -0.19 16 19 C -0.04 0.23 10.09 22.44 0.23 0.45 16 20 C -0.08 0.84 10.04 22.36 0.22 1.07 16 21 C -0.08 0.80 10.03 22.36 0.22 1.03 16 22 C -0.04 0.19 10.09 22.44 0.23 0.41 16 23 C 0.58 2.50 7.35 86.81 0.64 3.14 16 24 O -0.48 -3.45 15.16 -3.52 -0.05 -3.50 16 25 C 0.05 0.29 6.33 72.07 0.46 0.74 16 26 O -0.38 -3.09 10.43 -121.89 -1.27 -4.36 16 27 C -0.25 -0.78 9.02 22.41 0.20 -0.58 16 28 C 0.13 0.45 7.30 22.36 0.16 0.61 16 29 F -0.14 -0.77 17.27 44.97 0.78 0.01 16 30 C -0.18 -0.02 10.02 22.33 0.22 0.20 16 31 C -0.05 0.03 8.65 22.25 0.19 0.22 16 32 H 0.38 0.52 8.70 -74.06 -0.64 -0.13 16 33 H 0.10 0.74 7.83 -2.38 -0.02 0.72 16 34 H -0.26 -0.04 6.69 99.48 0.67 0.63 16 35 H -0.31 -2.57 7.11 99.48 0.71 -1.86 16 36 H 0.11 -0.29 7.66 -2.39 -0.02 -0.31 16 37 H 0.10 -0.17 7.66 -2.38 -0.02 -0.19 16 38 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.08 0.29 6.65 -2.38 -0.02 0.28 16 40 H 0.16 -1.32 8.06 -2.91 -0.02 -1.35 16 41 H 0.18 -2.91 8.06 -2.91 -0.02 -2.93 16 42 H 0.18 -2.77 8.06 -2.91 -0.02 -2.79 16 43 H 0.15 -0.94 8.06 -2.91 -0.02 -0.96 16 44 H 0.08 0.35 6.69 -2.39 -0.02 0.33 16 45 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.16 -0.11 6.30 -2.91 -0.02 -0.13 16 47 H 0.16 -0.67 8.06 -2.91 -0.02 -0.70 16 48 H 0.17 -0.87 4.85 -2.91 -0.01 -0.88 16 Total: 0.00 -25.37 409.96 0.78 -24.60 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: 0.42 Total: -8.53 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 4.63 Total: 14.55 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -1.87 Total: -4.89 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -5.25 Total: -27.68 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.78 Total: 0.01 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.07 Total: 1.94 kcal Total: -25.37 0.78 -24.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.007 kcal (2) G-P(sol) polarization free energy of solvation -25.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds