Wall clock time and date at job start Mon Mar 8 2021 13:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99737 * 2 1 4 4 C 1.52994 * 112.84993 * 65.33996 * 3 2 1 5 5 F 1.39900 * 109.47413 * 283.34727 * 4 3 2 6 6 F 1.39904 * 109.47456 * 163.34722 * 4 3 2 7 7 F 1.39904 * 109.47473 * 43.35068 * 4 3 2 8 8 C 1.53781 * 113.61531 * 294.14166 * 3 2 1 9 9 C 1.53782 * 87.08379 * 270.79960 * 8 3 2 10 10 H 1.08997 * 113.61781 * 220.01845 * 9 8 3 11 11 C 1.53001 * 113.61340 * 89.11271 * 9 8 3 12 12 O 1.42898 * 109.46987 * 175.00182 * 11 9 8 13 13 C 1.35896 * 117.00266 * 180.02562 * 12 11 9 14 14 C 1.38728 * 120.04862 * 180.02562 * 13 12 11 15 15 C 1.50693 * 119.99798 * 359.97438 * 14 13 12 16 16 O 1.42904 * 109.47580 * 285.00331 * 15 14 13 17 17 Si 1.86305 * 109.47053 * 165.00160 * 15 14 13 18 18 C 1.38174 * 119.99647 * 179.97438 * 14 13 12 19 19 C 1.38206 * 120.08148 * 359.97438 * 18 14 13 20 20 C 1.38519 * 120.08578 * 0.02562 * 19 18 14 21 21 F 1.35093 * 119.99939 * 180.02562 * 20 19 18 22 22 C 1.38347 * 120.00291 * 359.74214 * 20 19 18 23 23 C 1.53780 * 87.07889 * 334.56861 * 9 8 3 24 24 H 1.09003 * 109.47125 * 304.52367 * 1 2 3 25 25 H 1.08994 * 109.47465 * 64.52993 * 1 2 3 26 26 H 1.09007 * 109.46740 * 184.53062 * 1 2 3 27 27 H 1.08997 * 113.61534 * 25.34937 * 8 3 2 28 28 H 1.09007 * 113.61475 * 156.25284 * 8 3 2 29 29 H 1.08997 * 109.46946 * 295.00253 * 11 9 8 30 30 H 1.09000 * 109.46768 * 55.00781 * 11 9 8 31 31 H 1.08998 * 109.47790 * 45.00222 * 15 14 13 32 32 H 0.96708 * 113.99702 * 300.00384 * 16 15 14 33 33 H 1.48500 * 110.00092 * 179.97438 * 17 15 14 34 34 H 1.48500 * 109.99956 * 301.32230 * 17 15 14 35 35 H 1.07998 * 119.96075 * 179.97438 * 18 14 13 36 36 H 1.07999 * 119.95755 * 180.02562 * 19 18 14 37 37 H 1.08002 * 120.03982 * 180.25800 * 22 20 19 38 38 H 1.09007 * 113.61685 * 270.87926 * 23 9 8 39 39 H 1.09002 * 113.61565 * 139.98623 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7143 2.0874 1.2813 5 9 0.3995 2.5639 1.2439 6 9 2.5986 3.1667 1.3837 7 9 1.8745 1.2469 2.3882 8 6 1.7342 2.1026 -1.2858 9 6 3.0173 1.4756 -1.8563 10 1 3.6196 2.1700 -2.4420 11 6 2.7832 0.1424 -2.5694 12 8 4.0052 -0.3015 -3.1625 13 6 3.9702 -1.4791 -3.8400 14 6 5.1207 -1.9697 -4.4401 15 6 6.4103 -1.1964 -4.3415 16 8 6.3576 -0.0683 -5.2172 17 14 7.8326 -2.2960 -4.8303 18 6 5.0840 -3.1673 -5.1282 19 6 3.9022 -3.8781 -5.2192 20 6 2.7514 -3.3913 -4.6212 21 9 1.5973 -4.0878 -4.7108 22 6 2.7852 -2.1950 -3.9273 23 6 3.4942 1.3211 -0.4025 24 1 -0.3633 0.5824 0.8467 25 1 -0.3634 0.4419 -0.9277 26 1 -0.3633 -1.0245 0.0812 27 1 0.8280 1.7923 -1.8059 28 1 1.7980 3.1826 -1.1522 29 1 2.4385 -0.5994 -1.8490 30 1 2.0291 0.2730 -3.3456 31 1 6.5514 -0.8541 -3.3163 32 1 6.2334 -0.2986 -6.1482 33 1 9.1104 -1.5449 -4.7378 34 1 7.8791 -3.4890 -3.9472 35 1 5.9799 -3.5485 -5.5956 36 1 3.8759 -4.8142 -5.7572 37 1 1.8893 -1.8170 -3.4573 38 1 4.0393 2.1874 -0.0274 39 1 4.0090 0.3799 -0.2095 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_10564890_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:46 Heat of formation + Delta-G solvation = -243.477631 kcal Electronic energy + Delta-G solvation = -30587.206185 eV Core-core repulsion = 25577.147348 eV Total energy + Delta-G solvation = -5010.058837 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.21325 -49.95094 -48.75913 -48.64058 -41.90831 -41.06714 -38.71694 -37.41836 -37.13832 -32.48400 -31.64617 -30.35256 -28.37153 -27.47253 -26.96321 -26.50216 -24.16681 -23.25068 -22.65204 -20.70972 -19.98415 -19.56429 -19.45065 -19.27077 -18.35260 -17.82841 -17.45485 -17.14827 -17.01156 -16.62806 -16.48368 -16.41966 -15.97963 -15.80615 -15.71302 -15.56137 -15.52340 -15.26168 -15.12715 -14.88180 -14.82740 -14.59634 -14.56582 -14.31547 -14.09025 -13.81180 -13.42660 -13.31551 -13.10153 -12.82361 -12.59429 -12.46994 -12.18323 -12.10110 -11.88739 -11.85577 -11.77848 -10.93685 -10.39652 -10.03970 -9.33084 -5.06062 -0.07829 0.16015 1.28188 1.50764 1.63769 1.84990 1.94464 1.98421 2.37994 2.48805 2.57645 2.80170 3.08779 3.18124 3.30358 3.39345 3.49920 3.51860 3.62618 3.73788 3.91447 3.94844 4.02679 4.06757 4.10456 4.19254 4.23331 4.29484 4.30641 4.43724 4.51401 4.53360 4.59512 4.65653 4.82008 4.86321 4.92032 5.04368 5.12127 5.54811 5.56177 6.20612 6.62543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.333 6.333 3 C 0.038 3.962 4 C 0.437 3.563 5 F -0.181 7.181 6 F -0.174 7.174 7 F -0.174 7.174 8 C -0.142 4.142 9 C -0.098 4.098 10 H 0.109 0.891 11 C 0.066 3.934 12 O -0.294 6.294 13 C 0.188 3.812 14 C -0.167 4.167 15 C -0.053 4.053 16 O -0.534 6.534 17 Si 0.680 3.320 18 C -0.046 4.046 19 C -0.188 4.188 20 C 0.147 3.853 21 F -0.133 7.133 22 C -0.248 4.248 23 C -0.112 4.112 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.376 0.624 33 H -0.253 1.253 34 H -0.255 1.255 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -0.576 -4.083 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.251 6.251 3 C -0.004 4.004 4 C 0.383 3.617 5 F -0.163 7.163 6 F -0.156 7.156 7 F -0.155 7.155 8 C -0.179 4.179 9 C -0.116 4.116 10 H 0.127 0.873 11 C -0.009 4.009 12 O -0.206 6.206 13 C 0.141 3.859 14 C -0.168 4.168 15 C -0.163 4.163 16 O -0.339 6.339 17 Si 0.581 3.419 18 C -0.064 4.064 19 C -0.206 4.206 20 C 0.128 3.872 21 F -0.112 7.112 22 C -0.268 4.268 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.222 0.778 33 H -0.177 1.177 34 H -0.180 1.180 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.136 0.864 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.449 -0.669 -3.184 3.284 hybrid contribution -1.397 0.320 0.918 1.702 sum -0.948 -0.349 -2.265 2.481 Atomic orbital electron populations 1.23173 0.79428 1.04502 1.01648 1.88081 1.21190 1.21943 1.93870 1.24058 1.00009 0.86276 0.90073 1.21165 0.74358 0.78806 0.87415 1.93185 1.37113 1.89211 1.96754 1.93185 1.68688 1.57154 1.96527 1.93224 1.95134 1.70862 1.56291 1.23597 0.99496 1.01241 0.93611 1.22056 0.97572 0.96375 0.95582 0.87288 1.22827 0.85249 0.95888 0.96944 1.86136 1.35019 1.34297 1.65139 1.18388 0.92271 0.84894 0.90319 1.19773 0.95347 0.97634 1.04021 1.24870 0.99978 0.93760 0.97736 1.86557 1.95818 1.30934 1.20611 0.95159 0.77388 0.78654 0.90700 1.20663 0.97503 0.92449 0.95762 1.21036 0.91613 1.02956 1.05040 1.17418 0.82069 0.90338 0.97401 1.91539 1.47243 1.78104 1.94273 1.21225 0.99540 0.97717 1.08320 1.23276 0.90765 1.05813 0.95053 0.92557 0.92658 0.87960 0.88715 0.86826 0.89683 0.91280 0.86808 0.77764 1.17737 1.17978 0.83789 0.83910 0.84003 0.86422 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.45 101.05 1.06 1.04 16 2 O -0.33 0.00 8.36 -35.23 -0.29 -0.29 16 3 C 0.04 -0.03 0.85 -89.81 -0.08 -0.10 16 4 C 0.44 0.43 2.49 37.15 0.09 0.53 16 5 F -0.18 -0.22 15.19 2.25 0.03 -0.19 16 6 F -0.17 -0.20 15.82 2.25 0.04 -0.16 16 7 F -0.17 -0.49 17.09 2.25 0.04 -0.45 16 8 C -0.14 0.36 6.53 -25.92 -0.17 0.19 16 9 C -0.10 0.18 4.20 -89.81 -0.38 -0.19 16 10 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 11 C 0.07 -0.07 4.32 37.16 0.16 0.10 16 12 O -0.29 -0.34 9.47 -19.41 -0.18 -0.53 16 13 C 0.19 0.21 6.66 -39.22 -0.26 -0.05 16 14 C -0.17 -0.02 5.27 -104.47 -0.55 -0.57 16 15 C -0.05 0.00 2.38 36.00 0.09 0.09 16 16 O -0.53 -0.19 12.88 -35.23 -0.45 -0.64 16 17 Si 0.68 -0.94 29.92 -169.99 -5.09 -6.02 16 18 C -0.05 0.06 8.65 -39.62 -0.34 -0.28 16 19 C -0.19 0.11 10.02 -39.49 -0.40 -0.28 16 20 C 0.15 0.15 7.30 -39.44 -0.29 -0.14 16 21 F -0.13 -0.28 17.27 2.25 0.04 -0.24 16 22 C -0.25 -0.18 9.02 -39.36 -0.35 -0.54 16 23 C -0.11 0.14 6.89 -25.92 -0.18 -0.04 16 24 H 0.06 -0.06 6.12 -51.93 -0.32 -0.38 16 25 H 0.05 -0.18 6.85 -51.93 -0.36 -0.53 16 26 H 0.10 -0.29 8.14 -51.92 -0.42 -0.71 16 27 H 0.09 -0.33 6.77 -51.93 -0.35 -0.68 16 28 H 0.11 -0.37 8.07 -51.93 -0.42 -0.79 16 29 H 0.09 -0.06 5.63 -51.93 -0.29 -0.35 16 30 H 0.07 -0.14 7.67 -51.93 -0.40 -0.53 16 31 H 0.11 0.13 7.83 -51.93 -0.41 -0.28 16 32 H 0.38 -1.39 8.70 45.56 0.40 -1.00 16 33 H -0.25 -0.51 7.11 56.52 0.40 -0.10 16 34 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 35 H 0.14 -0.61 5.13 -52.49 -0.27 -0.88 16 36 H 0.14 -0.34 8.06 -52.49 -0.42 -0.77 16 37 H 0.14 -0.07 6.30 -52.49 -0.33 -0.40 16 38 H 0.12 -0.24 7.00 -51.93 -0.36 -0.60 16 39 H 0.10 -0.06 8.10 -51.93 -0.42 -0.48 16 LS Contribution 333.75 15.07 5.03 5.03 Total: 0.00 -6.30 333.75 -6.43 -12.73 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: -3.99 Total: -8.99 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.60 Total: -0.25 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.93 Total: -1.46 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.15 Total: -1.04 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.09 Total: -6.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -6.30 -6.43 -12.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -230.743 kcal (2) G-P(sol) polarization free energy of solvation -6.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds