Wall clock time and date at job start Mon Mar 8 2021 13:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99737 * 2 1 4 4 C 1.52994 * 112.84993 * 65.33996 * 3 2 1 5 5 F 1.39900 * 109.47413 * 283.34727 * 4 3 2 6 6 F 1.39904 * 109.47456 * 163.34722 * 4 3 2 7 7 F 1.39904 * 109.47473 * 43.35068 * 4 3 2 8 8 C 1.53781 * 113.61531 * 294.14166 * 3 2 1 9 9 C 1.53782 * 87.08379 * 270.79960 * 8 3 2 10 10 H 1.08997 * 113.61781 * 220.01845 * 9 8 3 11 11 C 1.53001 * 113.61340 * 89.11271 * 9 8 3 12 12 O 1.42898 * 109.46987 * 175.00182 * 11 9 8 13 13 C 1.35896 * 117.00266 * 180.02562 * 12 11 9 14 14 C 1.38728 * 120.04862 * 180.02562 * 13 12 11 15 15 C 1.50693 * 119.99798 * 359.97438 * 14 13 12 16 16 O 1.42904 * 109.47580 * 285.00331 * 15 14 13 17 17 Si 1.86305 * 109.47053 * 165.00160 * 15 14 13 18 18 C 1.38174 * 119.99647 * 179.97438 * 14 13 12 19 19 C 1.38206 * 120.08148 * 359.97438 * 18 14 13 20 20 C 1.38519 * 120.08578 * 0.02562 * 19 18 14 21 21 F 1.35093 * 119.99939 * 180.02562 * 20 19 18 22 22 C 1.38347 * 120.00291 * 359.74214 * 20 19 18 23 23 C 1.53780 * 87.07889 * 334.56861 * 9 8 3 24 24 H 1.09003 * 109.47125 * 304.52367 * 1 2 3 25 25 H 1.08994 * 109.47465 * 64.52993 * 1 2 3 26 26 H 1.09007 * 109.46740 * 184.53062 * 1 2 3 27 27 H 1.08997 * 113.61534 * 25.34937 * 8 3 2 28 28 H 1.09007 * 113.61475 * 156.25284 * 8 3 2 29 29 H 1.08997 * 109.46946 * 295.00253 * 11 9 8 30 30 H 1.09000 * 109.46768 * 55.00781 * 11 9 8 31 31 H 1.08998 * 109.47790 * 45.00222 * 15 14 13 32 32 H 0.96708 * 113.99702 * 300.00384 * 16 15 14 33 33 H 1.48500 * 110.00092 * 179.97438 * 17 15 14 34 34 H 1.48500 * 109.99956 * 301.32230 * 17 15 14 35 35 H 1.07998 * 119.96075 * 179.97438 * 18 14 13 36 36 H 1.07999 * 119.95755 * 180.02562 * 19 18 14 37 37 H 1.08002 * 120.03982 * 180.25800 * 22 20 19 38 38 H 1.09007 * 113.61685 * 270.87926 * 23 9 8 39 39 H 1.09002 * 113.61565 * 139.98623 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7143 2.0874 1.2813 5 9 0.3995 2.5639 1.2439 6 9 2.5986 3.1667 1.3837 7 9 1.8745 1.2469 2.3882 8 6 1.7342 2.1026 -1.2858 9 6 3.0173 1.4756 -1.8563 10 1 3.6196 2.1700 -2.4420 11 6 2.7832 0.1424 -2.5694 12 8 4.0052 -0.3015 -3.1625 13 6 3.9702 -1.4791 -3.8400 14 6 5.1207 -1.9697 -4.4401 15 6 6.4103 -1.1964 -4.3415 16 8 6.3576 -0.0683 -5.2172 17 14 7.8326 -2.2960 -4.8303 18 6 5.0840 -3.1673 -5.1282 19 6 3.9022 -3.8781 -5.2192 20 6 2.7514 -3.3913 -4.6212 21 9 1.5973 -4.0878 -4.7108 22 6 2.7852 -2.1950 -3.9273 23 6 3.4942 1.3211 -0.4025 24 1 -0.3633 0.5824 0.8467 25 1 -0.3634 0.4419 -0.9277 26 1 -0.3633 -1.0245 0.0812 27 1 0.8280 1.7923 -1.8059 28 1 1.7980 3.1826 -1.1522 29 1 2.4385 -0.5994 -1.8490 30 1 2.0291 0.2730 -3.3456 31 1 6.5514 -0.8541 -3.3163 32 1 6.2334 -0.2986 -6.1482 33 1 9.1104 -1.5449 -4.7378 34 1 7.8791 -3.4890 -3.9472 35 1 5.9799 -3.5485 -5.5956 36 1 3.8759 -4.8142 -5.7572 37 1 1.8893 -1.8170 -3.4573 38 1 4.0393 2.1874 -0.0274 39 1 4.0090 0.3799 -0.2095 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10564890_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:30:45 Heat of formation + Delta-G solvation = -239.351461 kcal Electronic energy + Delta-G solvation = -30587.027261 eV Core-core repulsion = 25577.147348 eV Total energy + Delta-G solvation = -5009.879913 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.31175 -50.02140 -48.84337 -48.77915 -41.83669 -41.00977 -38.68030 -37.39127 -37.05798 -32.46118 -31.59175 -30.30945 -28.23449 -27.45848 -26.83031 -26.48626 -24.13310 -23.20811 -22.63097 -20.64982 -19.98531 -19.61887 -19.49231 -19.28542 -18.33291 -17.82515 -17.37880 -17.12248 -16.97572 -16.58146 -16.48503 -16.41733 -15.93837 -15.80479 -15.70135 -15.64391 -15.56479 -15.22881 -15.18844 -14.99645 -14.94697 -14.57147 -14.54891 -14.29296 -14.04024 -13.75064 -13.29443 -13.27836 -13.03220 -12.70604 -12.54083 -12.40129 -12.18643 -12.04124 -11.84077 -11.81184 -11.66518 -10.86090 -10.37197 -10.01773 -9.31622 -4.98650 -0.06242 0.19611 1.33634 1.47971 1.69072 1.93213 2.02067 2.04014 2.41197 2.51086 2.57524 2.84326 3.10330 3.25540 3.33347 3.44030 3.57348 3.59373 3.72136 3.80932 3.99411 4.00932 4.19355 4.21211 4.23084 4.31174 4.35444 4.43921 4.45303 4.56912 4.60499 4.65336 4.74625 4.77095 4.87759 4.94891 4.98635 5.09611 5.17841 5.62106 5.65852 6.23718 6.85958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.346 6.346 3 C 0.037 3.963 4 C 0.433 3.567 5 F -0.183 7.183 6 F -0.176 7.176 7 F -0.188 7.188 8 C -0.132 4.132 9 C -0.092 4.092 10 H 0.112 0.888 11 C 0.065 3.935 12 O -0.308 6.308 13 C 0.171 3.829 14 C -0.173 4.173 15 C -0.062 4.062 16 O -0.552 6.552 17 Si 0.783 3.217 18 C -0.041 4.041 19 C -0.185 4.185 20 C 0.127 3.873 21 F -0.144 7.144 22 C -0.254 4.254 23 C -0.115 4.115 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.393 0.607 33 H -0.300 1.300 34 H -0.284 1.284 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -0.845 -5.346 5.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.264 6.264 3 C -0.006 4.006 4 C 0.378 3.622 5 F -0.165 7.165 6 F -0.158 7.158 7 F -0.170 7.170 8 C -0.169 4.169 9 C -0.111 4.111 10 H 0.131 0.869 11 C -0.010 4.010 12 O -0.221 6.221 13 C 0.125 3.875 14 C -0.175 4.175 15 C -0.171 4.171 16 O -0.360 6.360 17 Si 0.688 3.312 18 C -0.058 4.058 19 C -0.204 4.204 20 C 0.108 3.892 21 F -0.122 7.122 22 C -0.274 4.274 23 C -0.152 4.152 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.243 0.757 33 H -0.228 1.228 34 H -0.211 1.211 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.443 -0.931 -4.463 4.580 hybrid contribution -1.387 0.436 1.357 1.989 sum -0.943 -0.495 -3.105 3.283 Atomic orbital electron populations 1.23305 0.78675 1.05129 1.02136 1.88069 1.22114 1.22378 1.93882 1.24172 1.00345 0.86265 0.89806 1.21508 0.74216 0.78785 0.87657 1.93177 1.37271 1.89251 1.96754 1.93174 1.68742 1.57283 1.96560 1.93190 1.95213 1.71319 1.57241 1.23624 0.99648 1.01546 0.92102 1.22009 0.98004 0.96078 0.94984 0.86940 1.22908 0.84943 0.96047 0.97089 1.86118 1.36073 1.34502 1.65379 1.18606 0.92812 0.85161 0.90952 1.19966 0.95092 0.98217 1.04181 1.25055 1.00923 0.94044 0.97113 1.86512 1.95875 1.31522 1.22058 0.94044 0.73295 0.75209 0.88634 1.20968 0.98355 0.91529 0.94946 1.21323 0.91120 1.03580 1.04387 1.17680 0.82366 0.90715 0.98442 1.91509 1.47907 1.78330 1.94466 1.21306 0.99782 0.97818 1.08445 1.23333 0.90584 1.05575 0.95691 0.93425 0.90994 0.87137 0.87449 0.85779 0.90227 0.90266 0.88643 0.75744 1.22839 1.21055 0.80807 0.81924 0.83496 0.85777 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.45 113.37 1.18 1.18 16 2 O -0.35 -0.23 8.36 -148.98 -1.25 -1.47 16 3 C 0.04 -0.03 0.85 -10.27 -0.01 -0.04 16 4 C 0.43 1.16 2.49 71.98 0.18 1.34 16 5 F -0.18 -0.53 15.19 44.97 0.68 0.16 16 6 F -0.18 -0.50 15.82 44.97 0.71 0.21 16 7 F -0.19 -1.29 17.09 44.97 0.77 -0.52 16 8 C -0.13 0.72 6.53 31.12 0.20 0.92 16 9 C -0.09 0.33 4.20 -10.27 -0.04 0.28 16 10 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 11 C 0.06 -0.10 4.32 71.98 0.31 0.22 16 12 O -0.31 -0.99 9.47 -92.38 -0.87 -1.86 16 13 C 0.17 0.48 6.66 22.50 0.15 0.63 16 14 C -0.17 -0.02 5.27 -19.76 -0.10 -0.13 16 15 C -0.06 0.00 2.38 71.23 0.17 0.17 16 16 O -0.55 -0.35 12.88 -148.98 -1.92 -2.27 16 17 Si 0.78 -2.57 29.92 68.60 2.05 -0.52 16 18 C -0.04 0.16 8.65 22.25 0.19 0.35 16 19 C -0.19 0.39 10.02 22.33 0.22 0.62 16 20 C 0.13 0.28 7.30 22.36 0.16 0.44 16 21 F -0.14 -0.67 17.27 44.97 0.78 0.11 16 22 C -0.25 -0.52 9.02 22.41 0.20 -0.31 16 23 C -0.11 0.19 6.89 31.12 0.21 0.41 16 24 H 0.05 -0.07 6.12 -2.39 -0.01 -0.08 16 25 H 0.07 -0.49 6.85 -2.39 -0.02 -0.51 16 26 H 0.11 -0.59 8.14 -2.38 -0.02 -0.60 16 27 H 0.11 -0.85 6.77 -2.39 -0.02 -0.86 16 28 H 0.12 -0.91 8.07 -2.38 -0.02 -0.93 16 29 H 0.08 -0.03 5.63 -2.39 -0.01 -0.05 16 30 H 0.08 -0.31 7.67 -2.39 -0.02 -0.32 16 31 H 0.10 0.33 7.83 -2.39 -0.02 0.31 16 32 H 0.39 -3.21 8.70 -74.05 -0.64 -3.85 16 33 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 34 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 35 H 0.18 -1.88 5.13 -2.91 -0.01 -1.90 16 36 H 0.16 -1.06 8.06 -2.91 -0.02 -1.09 16 37 H 0.15 -0.03 6.30 -2.91 -0.02 -0.04 16 38 H 0.12 -0.42 7.00 -2.38 -0.02 -0.43 16 39 H 0.09 0.04 8.10 -2.39 -0.02 0.02 16 Total: 0.00 -15.85 333.75 4.51 -11.33 By element: Atomic # 1 Polarization: -11.76 SS G_CDS: 0.52 Total: -11.24 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 3.04 Total: 6.07 kcal Atomic # 8 Polarization: -1.56 SS G_CDS: -4.04 Total: -5.60 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 2.94 Total: -0.05 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.05 Total: -0.52 kcal Total: -15.85 4.51 -11.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.018 kcal (2) G-P(sol) polarization free energy of solvation -15.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds