Wall clock time and date at job start Mon Mar 8 2021 12:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86297 * 109.47358 * 2 1 4 4 C 1.86302 * 109.47126 * 240.00016 * 2 1 3 5 5 C 1.86306 * 109.47233 * 119.99991 * 2 1 3 6 6 O 1.42899 * 109.46863 * 66.58403 * 5 2 1 7 7 C 1.35903 * 116.99921 * 282.07351 * 6 5 2 8 8 C 1.38664 * 120.04398 * 353.85979 * 7 6 5 9 9 C 1.38383 * 119.91960 * 179.97438 * 8 7 6 10 10 F 1.35104 * 119.99745 * 179.97438 * 9 8 7 11 11 C 1.38473 * 120.00799 * 0.02770 * 9 8 7 12 12 C 1.38259 * 120.08289 * 359.69393 * 11 9 8 13 13 C 1.38134 * 120.07889 * 0.55735 * 12 11 9 14 14 C 1.50696 * 120.00326 * 179.74388 * 13 12 11 15 15 O 1.42891 * 109.47123 * 254.72439 * 14 13 12 16 16 Si 1.86296 * 109.46850 * 14.72650 * 14 13 12 17 17 H 1.48500 * 109.47363 * 60.00125 * 16 14 13 18 18 H 1.48508 * 109.46868 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47282 * 299.99648 * 16 14 13 20 20 H 1.09000 * 109.46749 * 295.55364 * 1 2 3 21 21 H 1.08992 * 109.46740 * 55.54890 * 1 2 3 22 22 H 1.09000 * 109.47182 * 175.55476 * 1 2 3 23 23 H 1.09003 * 109.47368 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.47434 * 300.00342 * 3 2 1 25 25 H 1.09004 * 109.47113 * 59.99843 * 3 2 1 26 26 H 1.09001 * 109.47002 * 305.00112 * 4 2 1 27 27 H 1.08993 * 109.46984 * 65.00111 * 4 2 1 28 28 H 1.08999 * 109.47124 * 185.00412 * 4 2 1 29 29 H 1.08998 * 109.47106 * 306.58680 * 5 2 1 30 30 H 1.08998 * 109.47102 * 186.58226 * 5 2 1 31 31 H 1.08000 * 120.04189 * 359.95445 * 8 7 6 32 32 H 1.08002 * 119.95786 * 180.02562 * 11 9 8 33 33 H 1.07999 * 119.96117 * 180.30205 * 12 11 9 34 34 H 1.09007 * 109.46646 * 134.72249 * 14 13 12 35 35 H 0.96711 * 114.00028 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5212 6 8 2.1380 -2.2627 1.4464 7 6 0.8529 -2.5941 1.7391 8 6 -0.0223 -1.6287 2.2132 9 6 -1.3304 -1.9689 2.5099 10 9 -2.1843 -1.0296 2.9723 11 6 -1.7640 -3.2721 2.3339 12 6 -0.8931 -4.2337 1.8559 13 6 0.4148 -3.8991 1.5635 14 6 1.3642 -4.9498 1.0480 15 8 2.2690 -5.3257 2.0880 16 14 0.3971 -6.4435 0.4962 17 1 -0.5432 -6.0528 -0.5847 18 1 1.3326 -7.4786 -0.0124 19 1 -0.3688 -6.9894 1.6452 20 1 -0.3633 0.4433 0.9272 21 1 -0.3632 0.5813 -0.8474 22 1 -0.3633 -1.0246 -0.0797 23 1 3.5741 1.7564 0.0005 24 1 2.1207 2.2703 -0.8899 25 1 2.1207 2.2703 0.8900 26 1 2.0494 -1.8768 -1.5671 27 1 2.1957 -0.3153 -2.4088 28 1 3.5703 -0.9565 -1.4775 29 1 2.0277 -0.4370 2.4072 30 1 3.5677 -0.7773 1.5820 31 1 0.3166 -0.6125 2.3509 32 1 -2.7852 -3.5367 2.5654 33 1 -1.2347 -5.2485 1.7148 34 1 1.9264 -4.5490 0.2044 35 1 2.9104 -6.0007 1.8265 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_10564890_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:34:22 Heat of formation + Delta-G solvation = -112.492319 kcal Electronic energy + Delta-G solvation = -18128.552956 eV Core-core repulsion = 15165.850462 eV Total energy + Delta-G solvation = -2962.702493 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 258.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.01984 -41.40659 -38.53724 -37.40874 -32.73060 -31.46248 -29.68122 -28.39806 -28.34576 -27.78197 -26.43985 -23.56536 -22.56696 -19.58033 -18.47732 -18.17709 -17.04036 -16.99922 -16.81951 -16.35351 -16.09123 -15.60039 -15.34446 -14.67551 -14.18921 -14.09496 -13.90985 -13.79190 -13.75981 -13.68505 -13.26759 -13.20934 -13.07498 -12.89036 -12.64372 -12.48067 -12.12082 -11.97662 -11.71245 -10.87976 -10.80673 -10.73856 -10.23848 -9.91672 -9.13339 -0.07180 0.18131 1.17335 1.47505 1.53007 1.54269 1.75591 1.82513 1.91268 2.36032 2.40485 2.55848 3.11714 3.48760 3.64904 3.86440 3.94410 4.11369 4.25091 4.26242 4.53209 4.69135 4.74099 4.75943 4.80077 4.81318 4.82651 4.85632 4.88206 4.94939 5.07745 5.19022 5.51367 5.57803 5.60511 5.62252 6.26861 6.86285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.052 2.948 3 C -0.455 4.455 4 C -0.457 4.457 5 C -0.270 4.270 6 O -0.286 6.286 7 C 0.168 3.832 8 C -0.246 4.246 9 C 0.127 3.873 10 F -0.142 7.142 11 C -0.190 4.190 12 C -0.064 4.064 13 C -0.138 4.138 14 C -0.076 4.076 15 O -0.561 6.561 16 Si 0.974 3.026 17 H -0.252 1.252 18 H -0.253 1.253 19 H -0.258 1.258 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 0.098 -2.552 3.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.245 2.755 3 C -0.563 4.563 4 C -0.564 4.564 5 C -0.389 4.389 6 O -0.198 6.198 7 C 0.121 3.879 8 C -0.266 4.266 9 C 0.108 3.892 10 F -0.120 7.120 11 C -0.209 4.209 12 C -0.082 4.082 13 C -0.139 4.139 14 C -0.185 4.185 15 O -0.370 6.370 16 Si 0.797 3.203 17 H -0.176 1.176 18 H -0.177 1.177 19 H -0.183 1.183 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.046 -0.291 -2.494 2.720 hybrid contribution 0.271 0.450 0.243 0.578 sum 1.317 0.159 -2.251 2.613 Atomic orbital electron populations 1.26671 1.21649 1.04228 1.04731 0.78888 0.65852 0.65948 0.64856 1.26126 1.06901 1.18149 1.05129 1.26166 1.06650 1.08084 1.15513 1.28646 1.08182 0.84942 1.17102 1.86100 1.23291 1.27659 1.82755 1.18584 0.84157 0.92518 0.92664 1.21432 0.93431 1.02311 1.09377 1.17565 0.87487 0.86537 0.97649 1.91508 1.69846 1.64501 1.86174 1.21206 1.02691 0.91216 1.05814 1.20977 0.91670 1.00159 0.95383 1.18992 0.94880 0.92503 1.07545 1.24685 0.96224 1.03820 0.93794 1.86485 1.49090 1.63291 1.38094 0.85391 0.79395 0.76141 0.79402 1.17592 1.17742 1.18287 0.91146 0.90656 0.91902 0.90427 0.90586 0.90720 0.91607 0.90814 0.90737 0.90385 0.85768 0.82109 0.82566 0.83006 0.89612 0.75534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 0.76 7.04 113.37 0.80 1.56 16 2 Si 1.05 -5.56 11.68 68.60 0.80 -4.75 16 3 C -0.45 2.39 8.65 113.37 0.98 3.37 16 4 C -0.46 1.29 8.65 113.37 0.98 2.27 16 5 C -0.27 0.64 5.31 113.37 0.60 1.24 16 6 O -0.29 -1.03 9.12 -92.45 -0.84 -1.88 16 7 C 0.17 0.82 5.77 22.50 0.13 0.95 16 8 C -0.25 -0.93 5.62 22.41 0.13 -0.80 16 9 C 0.13 0.66 7.30 22.36 0.16 0.82 16 10 F -0.14 -0.97 17.27 44.97 0.78 -0.19 16 11 C -0.19 -0.59 10.02 22.33 0.22 -0.36 16 12 C -0.06 -0.18 8.65 22.25 0.19 0.01 16 13 C -0.14 -0.63 5.31 -19.76 -0.10 -0.73 16 14 C -0.08 -0.09 2.37 71.23 0.17 0.08 16 15 O -0.56 -1.40 12.86 -148.98 -1.92 -3.32 16 16 Si 0.97 -1.28 25.48 68.60 1.75 0.47 16 17 H -0.25 0.13 7.11 99.48 0.71 0.84 16 18 H -0.25 0.39 7.11 99.48 0.71 1.09 16 19 H -0.26 -0.12 6.74 99.48 0.67 0.56 16 20 H 0.07 -0.10 6.50 -2.39 -0.02 -0.12 16 21 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 22 H 0.06 0.06 6.55 -2.39 -0.02 0.04 16 23 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 24 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 25 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 26 H 0.06 -0.08 7.96 -2.39 -0.02 -0.10 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.08 -0.27 6.06 -2.39 -0.01 -0.28 16 30 H 0.12 -0.65 7.96 -2.39 -0.02 -0.67 16 31 H 0.16 -0.01 4.24 -2.91 -0.01 -0.02 16 32 H 0.16 -0.15 8.06 -2.91 -0.02 -0.18 16 33 H 0.15 -0.14 4.88 -2.91 -0.01 -0.15 16 34 H 0.09 -0.11 7.83 -2.38 -0.02 -0.12 16 35 H 0.39 -2.60 8.74 -74.05 -0.65 -3.25 16 Total: 0.00 -11.63 288.60 6.00 -5.63 By element: Atomic # 1 Polarization: -5.54 SS G_CDS: 1.17 Total: -4.37 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.26 Total: 8.41 kcal Atomic # 8 Polarization: -2.43 SS G_CDS: -2.76 Total: -5.19 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.78 Total: -0.19 kcal Atomic # 14 Polarization: -6.83 SS G_CDS: 2.55 Total: -4.28 kcal Total: -11.63 6.00 -5.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_10564890_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.865 kcal (2) G-P(sol) polarization free energy of solvation -11.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds