Wall clock time and date at job start Mon Mar 8 2021 17:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47079 * 2 1 4 4 C 1.52998 * 109.47681 * 239.99308 * 2 1 3 5 5 Si 1.86302 * 109.46869 * 119.99410 * 2 1 3 6 6 C 1.86306 * 109.47318 * 300.00347 * 5 2 1 7 7 C 1.86297 * 109.47165 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47016 * 60.00213 * 5 2 1 9 9 C 1.42905 * 113.99905 * 179.97438 * 8 5 2 10 10 O 1.42906 * 109.46854 * 179.97438 * 9 8 5 11 11 C 1.35902 * 116.99507 * 75.00277 * 10 9 8 12 12 C 1.38727 * 120.03752 * 179.97438 * 11 10 9 13 13 C 1.38176 * 119.99384 * 179.97438 * 12 11 10 14 14 C 1.38216 * 120.07812 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.95635 * 180.02562 * 14 13 12 16 16 O 1.42900 * 109.47155 * 255.00512 * 15 14 13 17 17 Si 1.86290 * 109.47219 * 135.00195 * 15 14 13 18 18 H 1.48499 * 109.47174 * 60.00001 * 17 15 14 19 19 H 1.48501 * 109.47199 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47145 * 299.99837 * 17 15 14 21 21 C 1.38510 * 120.08603 * 0.02562 * 14 13 12 22 22 F 1.35096 * 119.99942 * 180.02562 * 21 14 13 23 23 C 1.38348 * 120.00242 * 359.74023 * 21 14 13 24 24 H 1.08997 * 109.47412 * 300.00472 * 1 2 3 25 25 H 1.08999 * 109.46454 * 60.00794 * 1 2 3 26 26 H 1.09006 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47329 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46825 * 299.99533 * 3 2 1 29 29 H 1.08997 * 109.47384 * 59.99511 * 3 2 1 30 30 H 1.08997 * 109.47329 * 300.00500 * 4 2 1 31 31 H 1.09009 * 109.46785 * 60.00155 * 4 2 1 32 32 H 1.08997 * 109.47366 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46973 * 179.97438 * 6 5 2 34 34 H 1.09001 * 109.46903 * 300.00200 * 6 5 2 35 35 H 1.08999 * 109.46903 * 59.99630 * 6 5 2 36 36 H 1.09005 * 109.47355 * 300.00075 * 7 5 2 37 37 H 1.08997 * 109.47216 * 60.00286 * 7 5 2 38 38 H 1.08999 * 109.47207 * 180.02562 * 7 5 2 39 39 H 1.09000 * 109.47187 * 300.00232 * 9 8 5 40 40 H 1.09001 * 109.46558 * 60.00280 * 9 8 5 41 41 H 1.08001 * 120.00685 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.96436 * 179.97438 * 13 12 11 43 43 H 1.09009 * 109.47071 * 14.99865 * 15 14 13 44 44 H 0.96702 * 113.99843 * 299.99780 * 16 15 14 45 45 H 1.08007 * 120.03602 * 180.25733 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 14 2.1509 -0.8781 1.5213 6 6 1.5298 0.0002 3.0424 7 6 4.0139 -0.8775 1.5217 8 8 1.6073 -2.4158 1.5213 9 6 2.0294 -3.1815 2.6517 10 8 1.5007 -4.5056 2.5544 11 6 2.0880 -5.3398 1.6565 12 6 1.6255 -6.6395 1.5105 13 6 2.2229 -7.4867 0.5969 14 6 3.2810 -7.0407 -0.1725 15 6 3.9301 -7.9669 -1.1684 16 8 5.1909 -8.4060 -0.6590 17 14 4.1906 -7.0647 -2.7774 18 1 5.0688 -5.8891 -2.5491 19 1 4.8297 -7.9775 -3.7589 20 1 2.8803 -6.6084 -3.3068 21 6 3.7454 -5.7437 -0.0294 22 9 4.7793 -5.3094 -0.7827 23 6 3.1466 -4.8910 0.8808 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2491 31 1 1.6768 -0.2076 -2.1392 32 1 3.1301 -0.7209 -1.2493 33 1 1.8928 -0.5138 3.9324 34 1 1.8931 1.0279 3.0423 35 1 0.4398 0.0002 3.0423 36 1 4.3777 -1.3911 0.6318 37 1 4.3769 0.1503 1.5219 38 1 4.3772 -1.3916 2.4115 39 1 3.1182 -3.2253 2.6748 40 1 1.6651 -2.7115 3.5653 41 1 0.7980 -6.9889 2.1101 42 1 1.8628 -8.4986 0.4839 43 1 3.2855 -8.8298 -1.3359 44 1 5.8165 -7.6892 -0.4861 45 1 3.5057 -3.8782 0.9899 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_11680688_14468166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:18:44 Heat of formation + Delta-G solvation = -183.475853 kcal Electronic energy + Delta-G solvation = -25749.272159 eV Core-core repulsion = 21998.196540 eV Total energy + Delta-G solvation = -3751.075619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.146 amu Computer time = 6.98 seconds Orbital eigenvalues (eV) -50.30534 -41.37454 -39.33253 -37.61440 -36.95402 -36.76204 -32.05832 -31.66700 -29.66825 -29.25403 -27.97466 -27.57773 -27.51249 -26.05635 -23.84730 -22.68641 -20.59051 -19.85391 -18.74252 -18.52095 -18.08779 -17.51532 -17.17881 -16.71781 -16.41389 -16.05215 -15.49886 -15.44602 -15.30489 -14.99401 -14.91942 -14.74644 -14.61399 -14.44335 -14.13305 -13.85823 -13.74421 -13.60230 -13.56910 -13.42106 -13.04394 -13.03650 -12.82790 -12.54503 -12.50669 -12.21054 -12.12502 -12.02636 -11.87832 -11.71379 -11.64054 -11.15963 -10.62796 -10.48642 -10.22199 -9.98478 -9.29239 0.03119 0.10244 1.08574 1.20960 1.49909 1.54240 1.59301 1.82420 1.96496 2.01855 2.31632 2.48059 3.08841 3.43457 3.54206 3.59015 3.68641 3.83549 3.91570 4.01162 4.01551 4.16872 4.35341 4.40958 4.47503 4.49409 4.53387 4.53960 4.56150 4.71287 4.76220 4.82240 4.90464 4.91018 4.95191 5.00967 5.01501 5.05431 5.12652 5.23680 5.26720 5.30101 5.37754 5.39751 5.45625 5.55425 6.13765 6.50448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.136 4.136 5 Si 1.290 2.710 6 C -0.512 4.512 7 C -0.516 4.516 8 O -0.645 6.645 9 C 0.246 3.754 10 O -0.291 6.291 11 C 0.163 3.837 12 C -0.155 4.155 13 C -0.032 4.032 14 C -0.186 4.186 15 C -0.072 4.072 16 O -0.535 6.535 17 Si 0.931 3.069 18 H -0.230 1.230 19 H -0.255 1.255 20 H -0.251 1.251 21 C 0.128 3.872 22 F -0.127 7.127 23 C -0.229 4.229 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.121 0.879 44 H 0.375 0.625 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 1.775 2.103 2.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.416 4.416 3 C -0.194 4.194 4 C -0.193 4.193 5 Si 1.423 2.577 6 C -0.614 4.614 7 C -0.618 4.618 8 O -0.605 6.605 9 C 0.133 3.867 10 O -0.205 6.205 11 C 0.118 3.882 12 C -0.174 4.174 13 C -0.050 4.050 14 C -0.188 4.188 15 C -0.182 4.182 16 O -0.340 6.340 17 Si 0.752 3.248 18 H -0.153 1.153 19 H -0.179 1.179 20 H -0.175 1.175 21 C 0.109 3.891 22 F -0.105 7.105 23 C -0.248 4.248 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.139 0.861 44 H 0.222 0.778 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.885 1.428 1.221 2.077 hybrid contribution 0.641 1.113 0.421 1.352 sum -0.244 2.541 1.642 3.035 Atomic orbital electron populations 1.21522 0.93618 1.02119 1.01946 1.25744 1.00846 1.02647 1.12343 1.21561 1.00804 0.94752 1.02326 1.21529 1.00626 1.00268 0.96858 0.76604 0.63004 0.52355 0.65743 1.27022 1.07388 1.09808 1.17220 1.27076 1.24686 1.05411 1.04610 1.85330 1.79888 1.46622 1.48680 1.23481 0.96351 0.78405 0.88420 1.86307 1.58355 1.21560 1.54262 1.18712 0.90501 0.90193 0.88798 1.20598 1.03273 0.91288 1.02230 1.20750 0.92749 0.99543 0.91968 1.20225 1.01347 0.93725 1.03494 1.24837 0.87298 1.02588 1.03515 1.86535 1.23546 1.36661 1.87308 0.86217 0.82745 0.80122 0.75728 1.15265 1.17887 1.17483 1.17299 0.87043 0.92400 0.92381 1.91564 1.55832 1.90137 1.72992 1.21169 1.00716 1.01722 1.01190 0.92598 0.92631 0.92118 0.92462 0.92313 0.92424 0.92202 0.92573 0.92658 0.91363 0.90269 0.90485 0.90656 0.90072 0.91377 0.91778 0.86948 0.83948 0.83714 0.86092 0.77788 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.37 0.32 0.53 -90.62 -0.05 0.27 16 3 C -0.14 0.18 7.85 37.16 0.29 0.47 16 4 C -0.14 0.02 7.85 37.16 0.29 0.31 16 5 Si 1.29 -2.65 8.45 -169.99 -1.44 -4.09 16 6 C -0.51 1.07 8.50 101.05 0.86 1.93 16 7 C -0.52 1.01 8.50 101.05 0.86 1.87 16 8 O -0.65 0.20 8.02 -59.04 -0.47 -0.27 16 9 C 0.25 -0.31 5.42 101.05 0.55 0.24 16 10 O -0.29 -0.32 10.40 -43.24 -0.45 -0.77 16 11 C 0.16 0.22 6.63 -39.23 -0.26 -0.04 16 12 C -0.16 -0.05 9.99 -39.42 -0.39 -0.44 16 13 C -0.03 0.01 9.66 -39.61 -0.38 -0.38 16 14 C -0.19 -0.16 4.78 -104.53 -0.50 -0.66 16 15 C -0.07 -0.02 2.81 36.01 0.10 0.08 16 16 O -0.54 -0.69 12.88 -35.23 -0.45 -1.14 16 17 Si 0.93 0.93 26.09 -169.99 -4.43 -3.50 16 18 H -0.23 -0.37 5.29 56.52 0.30 -0.07 16 19 H -0.25 -0.54 7.11 56.52 0.40 -0.13 16 20 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 21 C 0.13 0.20 6.61 -39.44 -0.26 -0.06 16 22 F -0.13 -0.24 12.60 2.25 0.03 -0.21 16 23 C -0.23 -0.29 8.76 -39.37 -0.34 -0.63 16 24 H 0.05 -0.06 7.79 -51.93 -0.40 -0.47 16 25 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 26 H 0.06 0.01 7.97 -51.93 -0.41 -0.40 16 27 H 0.06 -0.11 7.79 -51.93 -0.40 -0.52 16 28 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 30 H 0.06 0.03 7.96 -51.93 -0.41 -0.39 16 31 H 0.06 0.01 8.14 -51.92 -0.42 -0.41 16 32 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 33 H 0.07 -0.19 7.48 -51.93 -0.39 -0.58 16 34 H 0.08 -0.18 7.79 -51.93 -0.40 -0.58 16 35 H 0.08 -0.13 7.79 -51.93 -0.40 -0.53 16 36 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 37 H 0.08 -0.18 7.79 -51.93 -0.40 -0.58 16 38 H 0.07 -0.18 7.48 -51.93 -0.39 -0.57 16 39 H 0.06 -0.20 5.79 -51.93 -0.30 -0.50 16 40 H 0.11 -0.43 7.21 -51.93 -0.37 -0.80 16 41 H 0.14 -0.19 8.06 -52.49 -0.42 -0.61 16 42 H 0.15 -0.38 8.00 -52.49 -0.42 -0.80 16 43 H 0.12 -0.16 7.77 -51.92 -0.40 -0.56 16 44 H 0.38 -0.46 8.42 45.56 0.38 -0.07 16 45 H 0.14 0.00 5.85 -52.48 -0.31 -0.31 16 LS Contribution 362.40 15.07 5.46 5.46 Total: 0.00 -5.02 362.40 -7.56 -12.58 By element: Atomic # 1 Polarization: -4.49 SS G_CDS: -6.85 Total: -11.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 1.05 Total: 3.29 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: -1.38 Total: -2.19 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.03 Total: -0.21 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.87 Total: -7.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -5.02 -7.56 -12.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_14468166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.900 kcal (2) G-P(sol) polarization free energy of solvation -5.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.98 seconds