Wall clock time and date at job start Mon Mar 8 2021 13:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47145 * 2 1 4 4 C 1.86299 * 109.46866 * 239.99880 * 2 1 3 5 5 C 1.86804 * 109.47187 * 120.00115 * 2 1 3 6 6 C 1.38231 * 119.99699 * 89.99768 * 5 2 1 7 7 C 1.38243 * 119.99530 * 180.02562 * 6 5 2 8 8 C 1.38237 * 120.00096 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99966 * 179.97438 * 8 7 6 10 10 O 1.42906 * 109.46713 * 90.00637 * 9 8 7 11 11 C 1.35896 * 116.99879 * 180.02562 * 10 9 8 12 12 C 1.38735 * 120.04431 * 359.97438 * 11 10 9 13 13 C 1.38175 * 119.99572 * 179.75184 * 12 11 10 14 14 C 1.38214 * 120.07880 * 0.54795 * 13 12 11 15 15 C 1.50697 * 119.95814 * 179.72888 * 14 13 12 16 16 O 1.42906 * 109.46831 * 254.72617 * 15 14 13 17 17 Si 1.86300 * 109.47007 * 14.72006 * 15 14 13 18 18 H 1.48503 * 109.46942 * 60.00611 * 17 15 14 19 19 H 1.48503 * 109.47276 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47372 * 300.00074 * 17 15 14 21 21 C 1.38521 * 120.08567 * 359.44840 * 14 13 12 22 22 F 1.35093 * 119.99873 * 180.29905 * 21 14 13 23 23 C 1.38342 * 120.00329 * 0.27684 * 21 14 13 24 24 C 1.38232 * 119.99665 * 0.25525 * 8 7 6 25 25 C 1.38236 * 119.99571 * 270.01962 * 5 2 1 26 26 H 1.09004 * 109.46842 * 299.99995 * 1 2 3 27 27 H 1.09001 * 109.47098 * 59.99847 * 1 2 3 28 28 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47082 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46852 * 299.99814 * 3 2 1 31 31 H 1.08996 * 109.47105 * 60.00033 * 3 2 1 32 32 H 1.08999 * 109.47494 * 300.00130 * 4 2 1 33 33 H 1.09001 * 109.47040 * 60.00236 * 4 2 1 34 34 H 1.09004 * 109.47195 * 179.97438 * 4 2 1 35 35 H 1.07993 * 120.00727 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.99524 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47566 * 330.00513 * 9 8 7 38 38 H 1.08997 * 109.47456 * 209.99928 * 9 8 7 39 39 H 1.08004 * 120.00024 * 0.02562 * 12 11 10 40 40 H 1.07993 * 119.96275 * 180.26775 * 13 12 11 41 41 H 1.09000 * 109.47374 * 134.72190 * 15 14 13 42 42 H 0.96693 * 114.00047 * 60.00191 * 16 15 14 43 43 H 1.07999 * 120.04283 * 179.97438 * 23 21 14 44 44 H 1.08000 * 119.99992 * 179.71709 * 24 8 7 45 45 H 1.07997 * 120.00161 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5252 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8949 2.6198 8 6 3.4068 -2.1840 3.7827 9 6 3.9080 -2.8946 5.0135 10 8 5.3371 -2.8955 5.0141 11 6 5.9531 -3.5017 6.0628 12 6 5.1976 -4.0831 7.0706 13 6 5.8251 -4.7037 8.1339 14 6 7.2052 -4.7362 8.2006 15 6 7.8867 -5.4084 9.3645 16 8 8.4136 -4.4150 10.2464 17 14 6.6540 -6.4621 10.2817 18 1 6.1065 -7.4944 9.3653 19 1 7.3254 -7.1240 11.4291 20 1 5.5477 -5.6074 10.7822 21 6 7.9629 -4.1568 7.1961 22 9 9.3117 -4.1949 7.2601 23 6 7.3383 -3.5395 6.1271 24 6 3.1719 -0.8222 3.8183 25 6 2.7157 -0.1697 2.6882 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.5740 1.7564 -0.0005 30 1 2.1206 2.2703 -0.8901 31 1 2.1207 2.2703 0.8899 32 1 2.1206 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5739 -0.8779 -1.5214 35 1 2.5364 -2.7986 0.5823 36 1 3.3559 -3.9596 2.5931 37 1 3.5440 -3.9220 5.0135 38 1 3.5447 -2.3804 5.9032 39 1 4.1190 -4.0545 7.0220 40 1 5.2364 -5.1599 8.9159 41 1 8.6988 -6.0358 8.9972 42 1 7.7453 -3.8195 10.6122 43 1 7.9284 -3.0872 5.3438 44 1 3.3475 -0.2675 4.7281 45 1 2.5350 0.8947 2.7152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_11680688_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:40 Heat of formation + Delta-G solvation = -100.972779 kcal Electronic energy + Delta-G solvation = -25094.183304 eV Core-core repulsion = 21308.000535 eV Total energy + Delta-G solvation = -3786.182768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.06009 -41.43801 -40.05226 -38.94784 -37.25020 -33.36105 -32.03128 -31.88284 -31.47123 -29.44786 -28.30306 -28.27396 -27.58561 -26.25663 -24.21352 -23.49173 -22.77191 -21.89959 -19.81949 -18.64582 -17.92782 -17.51942 -17.26095 -17.08719 -16.85487 -16.53060 -16.12282 -15.80810 -15.57325 -15.54801 -15.10307 -14.84668 -14.33855 -14.20538 -14.07875 -14.06366 -13.93573 -13.74313 -13.70294 -13.36512 -13.31952 -13.13813 -13.12158 -12.97396 -12.84707 -12.36093 -12.26447 -12.10418 -12.06578 -11.78399 -11.67287 -10.93072 -10.77849 -10.76610 -10.46028 -10.06282 -9.80867 -9.69910 -9.41249 -0.04297 0.02008 0.14198 0.51892 1.12747 1.43481 1.54263 1.82909 1.90491 1.91977 2.01589 2.20514 2.34673 2.66164 2.97362 3.24382 3.45478 3.48770 3.69735 3.77101 3.81454 3.87481 4.06839 4.14692 4.16799 4.24344 4.34727 4.50727 4.53220 4.71303 4.76690 4.84151 4.84219 4.85592 4.88046 4.88600 4.88759 4.90286 5.00169 5.04888 5.06936 5.15813 5.39651 5.51907 5.56159 5.58722 5.59350 5.67546 5.70013 6.11707 6.19443 6.68699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.127 2.873 3 C -0.464 4.464 4 C -0.464 4.464 5 C -0.373 4.373 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.105 4.105 9 C 0.096 3.904 10 O -0.319 6.319 11 C 0.160 3.840 12 C -0.208 4.208 13 C -0.055 4.055 14 C -0.197 4.197 15 C -0.088 4.088 16 O -0.555 6.555 17 Si 0.996 3.004 18 H -0.251 1.251 19 H -0.275 1.275 20 H -0.232 1.232 21 C 0.147 3.853 22 F -0.139 7.139 23 C -0.204 4.204 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.108 0.892 42 H 0.390 0.610 43 H 0.142 0.858 44 H 0.129 0.871 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 0.390 -0.859 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.314 2.686 3 C -0.571 4.571 4 C -0.571 4.571 5 C -0.412 4.412 6 C -0.123 4.123 7 C -0.140 4.140 8 C -0.105 4.105 9 C 0.022 3.978 10 O -0.233 6.233 11 C 0.114 3.886 12 C -0.226 4.226 13 C -0.072 4.072 14 C -0.198 4.198 15 C -0.197 4.197 16 O -0.362 6.362 17 Si 0.817 3.183 18 H -0.175 1.175 19 H -0.201 1.201 20 H -0.155 1.155 21 C 0.127 3.873 22 F -0.118 7.118 23 C -0.223 4.223 24 C -0.139 4.139 25 C -0.123 4.123 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.126 0.874 42 H 0.239 0.761 43 H 0.159 0.841 44 H 0.147 0.853 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.546 -0.346 -0.673 6.590 hybrid contribution 0.507 0.443 -0.039 0.674 sum -6.039 0.097 -0.712 6.082 Atomic orbital electron populations 1.26266 1.21364 1.04528 1.04617 0.77161 0.65304 0.64499 0.61603 1.26297 1.06317 1.19558 1.04887 1.26298 1.06316 1.08551 1.15896 1.28030 1.02377 0.99636 1.11162 1.21398 0.97430 0.95209 0.98257 1.21408 0.99044 1.00577 0.92924 1.19625 1.01438 0.94508 0.94964 1.21893 0.77041 1.01732 0.97111 1.86166 1.22650 1.72555 1.41955 1.18697 0.91103 0.91568 0.87240 1.21557 1.01962 1.03771 0.95316 1.21050 0.92322 0.95883 0.97984 1.20431 0.94667 1.06018 0.98696 1.25159 1.06903 0.96224 0.91383 1.86525 1.39143 1.47471 1.63094 0.85055 0.76460 0.78203 0.78552 1.17512 1.20056 1.15484 1.17269 0.76717 0.98313 0.94955 1.91503 1.29617 1.94365 1.96266 1.20383 0.93383 1.07570 1.00991 1.21405 0.99051 0.93816 0.99667 1.21400 0.97441 1.00748 0.92703 0.91309 0.90681 0.91310 0.91485 0.90666 0.90866 0.90870 0.90666 0.91485 0.84357 0.85280 0.89137 0.89119 0.81739 0.82287 0.87353 0.76114 0.84060 0.85264 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.99 8.65 113.37 0.98 2.97 16 2 Si 1.13 -6.82 12.32 68.60 0.85 -5.97 16 3 C -0.46 2.00 8.53 113.37 0.97 2.96 16 4 C -0.46 1.99 8.53 113.37 0.97 2.96 16 5 C -0.37 0.42 4.59 22.27 0.10 0.52 16 6 C -0.11 0.00 9.29 22.27 0.21 0.21 16 7 C -0.12 -0.16 9.70 22.27 0.22 0.06 16 8 C -0.11 -0.16 5.51 -19.87 -0.11 -0.27 16 9 C 0.10 -0.15 4.87 71.23 0.35 0.20 16 10 O -0.32 -1.24 10.12 -92.38 -0.93 -2.18 16 11 C 0.16 0.49 6.69 22.50 0.15 0.64 16 12 C -0.21 0.34 9.04 22.37 0.20 0.54 16 13 C -0.05 0.09 8.65 22.25 0.19 0.29 16 14 C -0.20 -0.47 5.27 -19.80 -0.10 -0.58 16 15 C -0.09 -0.11 2.45 71.23 0.17 0.07 16 16 O -0.55 -1.72 12.88 -148.98 -1.92 -3.63 16 17 Si 1.00 -2.60 25.48 68.60 1.75 -0.85 16 18 H -0.25 0.50 7.11 99.48 0.71 1.21 16 19 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 20 H -0.23 1.31 6.74 99.48 0.67 1.98 16 21 C 0.15 0.96 7.24 22.36 0.16 1.12 16 22 F -0.14 -1.43 16.75 44.97 0.75 -0.67 16 23 C -0.20 -1.15 9.97 22.41 0.22 -0.93 16 24 C -0.12 -0.15 9.70 22.27 0.22 0.06 16 25 C -0.11 0.01 9.29 22.27 0.21 0.21 16 26 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 27 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 30 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 31 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 32 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.14 -0.56 7.43 -2.91 -0.02 -0.58 16 36 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.09 -0.46 7.60 -2.39 -0.02 -0.48 16 38 H 0.09 -0.46 7.60 -2.39 -0.02 -0.48 16 39 H 0.17 -1.22 6.30 -2.91 -0.02 -1.24 16 40 H 0.16 -1.08 4.88 -2.91 -0.01 -1.10 16 41 H 0.11 0.24 7.90 -2.39 -0.02 0.22 16 42 H 0.39 -1.87 8.70 -74.06 -0.64 -2.52 16 43 H 0.14 0.77 8.06 -2.91 -0.02 0.74 16 44 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.14 -0.57 7.43 -2.91 -0.02 -0.59 16 Total: 0.00 -14.77 379.59 6.66 -8.11 By element: Atomic # 1 Polarization: -6.91 SS G_CDS: 1.07 Total: -5.84 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.10 Total: 11.05 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: -2.85 Total: -5.81 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.75 Total: -0.67 kcal Atomic # 14 Polarization: -9.42 SS G_CDS: 2.59 Total: -6.83 kcal Total: -14.77 6.66 -8.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_11680688_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.865 kcal (2) G-P(sol) polarization free energy of solvation -14.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds