Wall clock time and date at job start Mon Mar 8 2021 12:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38125 * 119.97569 * 2 1 4 4 C 1.38742 * 119.95425 * 180.02562 * 3 2 1 5 5 O 1.35922 * 120.04297 * 179.97438 * 4 3 2 6 6 C 1.42899 * 117.00145 * 0.02562 * 5 4 3 7 7 C 1.52999 * 109.47422 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46695 * 64.99968 * 7 6 5 9 9 Si 1.63105 * 113.99693 * 180.02562 * 8 7 6 10 10 C 1.86297 * 109.46893 * 299.99852 * 9 8 7 11 11 C 1.86297 * 109.47196 * 59.99863 * 9 8 7 12 12 C 1.86298 * 109.46893 * 179.97438 * 9 8 7 13 13 C 1.53004 * 109.47203 * 59.99959 * 12 9 8 14 14 C 1.53005 * 109.47066 * 179.97438 * 12 9 8 15 15 C 1.53000 * 109.47302 * 299.99706 * 12 9 8 16 16 C 1.38710 * 119.91607 * 359.97438 * 4 3 2 17 17 C 1.50704 * 120.01951 * 179.97438 * 16 4 3 18 18 O 1.42903 * 109.46681 * 285.03996 * 17 16 4 19 19 Si 1.86300 * 109.46665 * 165.04354 * 17 16 4 20 20 H 1.48498 * 109.47300 * 59.99783 * 19 17 16 21 21 H 1.48502 * 109.46888 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47324 * 299.99560 * 19 17 16 23 23 C 1.38160 * 119.95545 * 0.02562 * 16 4 3 24 24 C 1.38342 * 120.04379 * 359.95403 * 23 16 4 25 25 Cl 1.73605 * 119.95963 * 180.02562 * 24 23 16 26 26 H 1.08998 * 109.47585 * 89.99833 * 1 2 3 27 27 H 1.08996 * 109.46924 * 210.00181 * 1 2 3 28 28 H 1.09002 * 109.47011 * 329.99656 * 1 2 3 29 29 H 1.07997 * 120.02584 * 359.74531 * 3 2 1 30 30 H 1.09004 * 109.46513 * 300.00163 * 6 5 4 31 31 H 1.09001 * 109.47158 * 59.99769 * 6 5 4 32 32 H 1.08996 * 109.47249 * 184.99930 * 7 6 5 33 33 H 1.08997 * 109.46934 * 305.00435 * 7 6 5 34 34 H 1.08997 * 109.47133 * 60.00218 * 10 9 8 35 35 H 1.09007 * 109.47118 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47456 * 299.99995 * 10 9 8 37 37 H 1.09002 * 109.46899 * 60.00073 * 11 9 8 38 38 H 1.08998 * 109.47464 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47248 * 300.00039 * 11 9 8 40 40 H 1.09002 * 109.46904 * 59.99786 * 13 12 9 41 41 H 1.08999 * 109.47004 * 179.97438 * 13 12 9 42 42 H 1.08997 * 109.47191 * 299.99683 * 13 12 9 43 43 H 1.09005 * 109.46606 * 59.99916 * 14 12 9 44 44 H 1.08997 * 109.47227 * 180.02562 * 14 12 9 45 45 H 1.09002 * 109.47248 * 300.00341 * 14 12 9 46 46 H 1.08998 * 109.46533 * 60.00402 * 15 12 9 47 47 H 1.09006 * 109.47009 * 179.97438 * 15 12 9 48 48 H 1.08997 * 109.47440 * 300.00308 * 15 12 9 49 49 H 1.08996 * 109.47425 * 45.04329 * 17 16 4 50 50 H 0.96697 * 113.99495 * 179.97438 * 18 17 16 51 51 H 1.08000 * 119.98023 * 179.97438 * 23 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1965 0.0000 4 6 3.5845 1.1960 -0.0005 5 8 4.2655 2.3723 -0.0011 6 6 3.4886 3.5717 -0.0005 7 6 4.4219 4.7840 -0.0005 8 8 5.1631 4.8143 -1.2219 9 14 6.1986 6.0691 -1.3385 10 6 5.2500 7.6689 -1.2313 11 6 7.4347 5.9856 0.0528 12 6 7.0942 5.9856 -2.9699 13 6 6.0794 6.0538 -4.1130 14 6 8.0651 7.1631 -3.0796 15 6 7.8733 4.6717 -3.0574 16 6 4.2759 -0.0066 -0.0005 17 6 5.7829 -0.0098 -0.0017 18 8 6.2589 0.3382 -1.3034 19 14 6.4004 -1.7080 0.4519 20 1 5.9024 -2.6966 -0.5380 21 1 7.8855 -1.7115 0.4502 22 1 5.9057 -2.0697 1.8046 23 6 3.5820 -1.2013 -0.0005 24 6 2.1985 -1.1987 0.0004 25 17 1.3288 -2.7012 0.0011 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6572 2.1318 -0.0042 30 1 2.8591 3.5971 -0.8900 31 1 2.8604 3.5972 0.8900 32 1 3.8324 5.6964 0.0895 33 1 5.1110 4.7120 0.8409 34 1 4.7263 7.7175 -0.2766 35 1 5.9420 8.5076 -1.3087 36 1 4.5268 7.7178 -2.0453 37 1 7.9896 5.0495 -0.0100 38 1 8.1269 6.8239 -0.0253 39 1 6.9110 6.0342 1.0075 40 1 5.5244 6.9899 -4.0506 41 1 6.6035 6.0054 -5.0675 42 1 5.3875 5.2153 -4.0351 43 1 8.7881 7.1148 -2.2653 44 1 8.5888 7.1145 -4.0343 45 1 7.5098 8.0989 -3.0174 46 1 7.1813 3.8332 -2.9795 47 1 8.3970 4.6227 -4.0122 48 1 8.5963 4.6231 -2.2431 49 1 6.1484 0.7158 0.7249 50 1 7.2229 0.3562 -1.3778 51 1 4.1198 -2.1378 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12058104_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:58:53 Heat of formation + Delta-G solvation = -150.104252 kcal Electronic energy + Delta-G solvation = -29128.482709 eV Core-core repulsion = 25177.433136 eV Total energy + Delta-G solvation = -3951.049573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.148 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51632 -39.22426 -37.92214 -37.58340 -37.04874 -36.79420 -34.20941 -31.48720 -30.22880 -29.38120 -29.23508 -29.02999 -27.81304 -27.35108 -25.25605 -24.79791 -22.79519 -22.09417 -20.38618 -18.84896 -18.48167 -17.98151 -17.81575 -17.34929 -16.45699 -16.28517 -15.86408 -15.76791 -15.36878 -15.28800 -15.01282 -14.91350 -14.81732 -14.70245 -14.49560 -14.15342 -13.87855 -13.57619 -13.44758 -13.42410 -13.33732 -13.18029 -13.14336 -12.93051 -12.91205 -12.88490 -12.66678 -12.63191 -12.37907 -12.25163 -12.14825 -11.83402 -11.83023 -11.68987 -11.61587 -11.52632 -11.42835 -11.20309 -10.27480 -10.25404 -10.02093 -9.97523 -9.11829 0.00662 0.12164 1.10381 1.14261 1.41104 1.45958 1.57664 1.82136 1.86347 2.15354 2.18491 2.38449 2.51465 3.39941 3.59666 3.73998 3.94268 3.99377 4.05384 4.13969 4.15211 4.16819 4.23920 4.32209 4.44039 4.47990 4.49706 4.51994 4.65220 4.71763 4.74574 4.77766 4.81066 4.82187 4.82711 4.84779 4.85519 4.94112 5.02540 5.02729 5.11560 5.11939 5.17527 5.22914 5.28322 5.36637 5.43247 5.45363 5.49448 5.55681 5.63050 5.67626 6.35884 6.85012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.031 4.031 3 C -0.202 4.202 4 C 0.161 3.839 5 O -0.302 6.302 6 C 0.042 3.958 7 C 0.076 3.924 8 O -0.637 6.637 9 Si 1.318 2.682 10 C -0.516 4.516 11 C -0.517 4.517 12 C -0.385 4.385 13 C -0.136 4.136 14 C -0.140 4.140 15 C -0.134 4.134 16 C -0.125 4.125 17 C -0.066 4.066 18 O -0.556 6.556 19 Si 0.963 3.037 20 H -0.265 1.265 21 H -0.247 1.247 22 H -0.255 1.255 23 C -0.083 4.083 24 C -0.089 4.089 25 Cl -0.069 7.069 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.045 0.955 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.393 0.607 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 4.682 3.022 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.032 4.032 3 C -0.220 4.220 4 C 0.114 3.886 5 O -0.215 6.215 6 C -0.032 4.032 7 C 0.001 3.999 8 O -0.596 6.596 9 Si 1.448 2.552 10 C -0.618 4.618 11 C -0.619 4.619 12 C -0.427 4.427 13 C -0.193 4.193 14 C -0.197 4.197 15 C -0.191 4.191 16 C -0.126 4.126 17 C -0.176 4.176 18 O -0.364 6.364 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.170 1.170 22 H -0.179 1.179 23 C -0.102 4.102 24 C -0.116 4.116 25 Cl -0.040 7.040 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.183 0.817 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.243 0.757 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.036 3.580 2.982 4.773 hybrid contribution 0.605 0.427 -0.245 0.780 sum -0.431 4.008 2.737 4.872 Atomic orbital electron populations 1.20988 0.88366 1.04601 1.03909 1.19863 0.97922 0.90380 0.95049 1.21370 0.92305 0.99521 1.08840 1.18916 0.90545 0.86105 0.93045 1.86194 1.35909 1.12134 1.87259 1.23387 0.94528 0.81759 1.03561 1.22358 0.95082 0.96927 0.85579 1.85423 1.63507 1.69338 1.41344 0.76159 0.59621 0.55675 0.63776 1.27074 1.09910 1.19992 1.04866 1.27101 1.14161 1.04636 1.15977 1.25970 1.03173 0.97786 1.15778 1.21527 0.98353 1.01758 0.97653 1.21601 0.98871 0.97194 1.02056 1.21504 0.99768 0.96320 1.01540 1.18694 0.95088 0.90431 1.08366 1.24524 0.92498 1.11266 0.89348 1.86504 1.28050 1.93018 1.28876 0.85562 0.80312 0.75604 0.79898 1.18993 1.17046 1.17866 1.20876 0.92784 0.97983 0.98511 1.20663 0.91942 0.87496 1.11493 1.98355 1.76481 1.31999 1.97186 0.89627 0.90728 0.88961 0.81748 0.90500 0.88049 0.87778 0.90729 0.90531 0.90474 0.91076 0.91449 0.90529 0.90901 0.91922 0.93597 0.92861 0.91834 0.93337 0.91719 0.92792 0.93635 0.92119 0.89501 0.75691 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.22 9.61 71.24 0.68 0.91 16 2 C -0.03 -0.09 5.88 -19.86 -0.12 -0.20 16 3 C -0.20 -0.30 8.69 22.36 0.19 -0.10 16 4 C 0.16 0.80 6.66 22.50 0.15 0.95 16 5 O -0.30 -1.14 9.43 -88.03 -0.83 -1.97 16 6 C 0.04 -0.14 5.12 71.98 0.37 0.23 16 7 C 0.08 -0.34 5.51 71.98 0.40 0.05 16 8 O -0.64 -0.02 8.52 -144.34 -1.23 -1.25 16 9 Si 1.32 -4.11 8.45 68.60 0.58 -3.53 16 10 C -0.52 2.02 8.50 113.37 0.96 2.98 16 11 C -0.52 1.31 8.50 113.37 0.96 2.27 16 12 C -0.39 0.04 0.53 -10.79 -0.01 0.04 16 13 C -0.14 -0.16 7.85 71.98 0.56 0.41 16 14 C -0.14 0.17 7.85 71.98 0.56 0.73 16 15 C -0.13 -0.22 7.85 71.98 0.56 0.35 16 16 C -0.12 -0.79 5.30 -19.77 -0.10 -0.90 16 17 C -0.07 -0.21 2.37 71.24 0.17 -0.04 16 18 O -0.56 -2.43 12.86 -148.98 -1.92 -4.35 16 19 Si 0.96 1.62 25.49 68.60 1.75 3.37 16 20 H -0.27 -1.22 6.73 99.48 0.67 -0.55 16 21 H -0.25 -0.12 7.11 99.48 0.71 0.59 16 22 H -0.25 -0.71 7.11 99.48 0.71 0.00 16 23 C -0.08 -0.55 8.44 22.28 0.19 -0.36 16 24 C -0.09 -0.53 6.31 22.33 0.14 -0.39 16 25 Cl -0.07 -0.37 27.29 -2.72 -0.07 -0.45 16 26 H 0.09 -0.23 8.14 -2.39 -0.02 -0.24 16 27 H 0.07 -0.06 6.90 -2.39 -0.02 -0.08 16 28 H 0.09 -0.52 8.08 -2.39 -0.02 -0.54 16 29 H 0.17 -0.76 6.30 -2.91 -0.02 -0.77 16 30 H 0.08 -0.27 7.66 -2.39 -0.02 -0.29 16 31 H 0.10 -0.89 7.67 -2.39 -0.02 -0.91 16 32 H 0.10 -1.07 7.21 -2.39 -0.02 -1.09 16 33 H 0.07 -0.47 7.21 -2.39 -0.02 -0.49 16 34 H 0.08 -0.45 7.48 -2.39 -0.02 -0.47 16 35 H 0.08 -0.31 7.79 -2.38 -0.02 -0.33 16 36 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 37 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 38 H 0.08 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.07 -0.28 7.48 -2.39 -0.02 -0.30 16 40 H 0.06 -0.06 7.80 -2.39 -0.02 -0.08 16 41 H 0.04 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.05 0.13 7.96 -2.39 -0.02 0.12 16 43 H 0.06 -0.17 7.79 -2.38 -0.02 -0.19 16 44 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 46 H 0.05 0.19 7.96 -2.39 -0.02 0.17 16 47 H 0.04 0.12 8.14 -2.38 -0.02 0.10 16 48 H 0.06 -0.01 7.79 -2.39 -0.02 -0.03 16 49 H 0.09 0.05 7.83 -2.39 -0.02 0.03 16 50 H 0.39 -1.78 8.74 -74.06 -0.65 -2.43 16 51 H 0.14 0.74 4.89 -2.91 -0.01 0.72 16 Total: 0.00 -13.97 416.23 4.94 -9.03 By element: Atomic # 1 Polarization: -8.76 SS G_CDS: 0.98 Total: -7.78 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.69 Total: 6.93 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -3.98 Total: -7.57 kcal Atomic # 14 Polarization: -2.49 SS G_CDS: 2.33 Total: -0.17 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.07 Total: -0.45 kcal Total: -13.97 4.94 -9.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12058104_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.077 kcal (2) G-P(sol) polarization free energy of solvation -13.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds