Wall clock time and date at job start Mon Mar 8 2021 12:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 C 1.53000 * 109.47243 * 239.99608 * 2 1 3 5 5 Si 1.86306 * 109.47109 * 119.99985 * 2 1 3 6 6 C 1.86300 * 109.46845 * 299.99933 * 5 2 1 7 7 C 1.86296 * 109.47179 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.46979 * 59.99880 * 5 2 1 9 9 C 1.42904 * 113.99859 * 180.02562 * 8 5 2 10 10 C 1.53004 * 109.47315 * 179.97438 * 9 8 5 11 11 C 1.52989 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.35903 * 117.00066 * 180.02562 * 12 11 10 14 14 C 1.38689 * 120.04780 * 0.02562 * 13 12 11 15 15 C 1.38256 * 119.93047 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 119.98317 * 179.97438 * 15 14 13 17 17 C 1.38339 * 120.03603 * 0.02562 * 15 14 13 18 18 C 1.38272 * 120.10138 * 359.74534 * 17 15 14 19 19 C 1.38130 * 120.06299 * 0.50715 * 18 17 15 20 20 C 1.50699 * 120.01748 * 179.77049 * 19 18 17 21 21 O 1.42895 * 109.47044 * 254.72591 * 20 19 18 22 22 Si 1.86300 * 109.46944 * 14.72519 * 20 19 18 23 23 H 1.48503 * 109.46942 * 180.02562 * 22 20 19 24 24 H 1.48503 * 109.47276 * 299.99703 * 22 20 19 25 25 H 1.48494 * 109.47372 * 59.99692 * 22 20 19 26 26 H 1.09003 * 109.47383 * 300.00202 * 1 2 3 27 27 H 1.09007 * 109.47266 * 60.00179 * 1 2 3 28 28 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46836 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46705 * 299.99569 * 3 2 1 31 31 H 1.08995 * 109.47075 * 59.99918 * 3 2 1 32 32 H 1.08998 * 109.47240 * 300.00233 * 4 2 1 33 33 H 1.09005 * 109.47302 * 60.00123 * 4 2 1 34 34 H 1.08999 * 109.47291 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47226 * 179.97438 * 6 5 2 36 36 H 1.08998 * 109.47186 * 299.99949 * 6 5 2 37 37 H 1.08999 * 109.47260 * 60.00100 * 6 5 2 38 38 H 1.08995 * 109.47137 * 300.00014 * 7 5 2 39 39 H 1.08998 * 109.47090 * 59.99905 * 7 5 2 40 40 H 1.08996 * 109.46853 * 179.97438 * 7 5 2 41 41 H 1.09002 * 109.46876 * 59.99862 * 9 8 5 42 42 H 1.08996 * 109.46883 * 299.99666 * 9 8 5 43 43 H 1.09008 * 109.46583 * 59.99724 * 10 9 8 44 44 H 1.09000 * 109.47083 * 300.00267 * 10 9 8 45 45 H 1.09000 * 109.47275 * 59.99790 * 11 10 9 46 46 H 1.09000 * 109.47511 * 300.00288 * 11 10 9 47 47 H 1.07999 * 120.04082 * 359.95841 * 14 13 12 48 48 H 1.08002 * 119.94562 * 180.02562 * 17 15 14 49 49 H 1.07998 * 119.96933 * 180.25525 * 18 17 15 50 50 H 1.09001 * 109.47358 * 134.71877 * 20 19 18 51 51 H 0.96705 * 114.00010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0285 -3.1814 2.6521 10 6 1.4626 -4.5991 2.5478 11 6 1.9141 -5.4187 3.7582 12 8 1.3860 -6.7430 3.6605 13 6 1.6948 -7.6059 4.6640 14 6 2.4890 -7.1865 5.7208 15 6 2.8012 -8.0662 6.7406 16 35 3.8844 -7.4961 8.1819 17 6 2.3223 -9.3636 6.7067 18 6 1.5265 -9.7819 5.6562 19 6 1.2164 -8.9080 4.6324 20 6 0.3532 -9.3665 3.4853 21 8 1.1671 -9.5703 2.3287 22 14 -0.4886 -10.9646 3.9418 23 1 -1.3386 -11.4167 2.8112 24 1 0.5367 -11.9984 4.2337 25 1 -1.3343 -10.7529 5.1439 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.8929 -0.5140 3.9323 36 1 1.8933 1.0277 3.0422 37 1 0.4400 0.0001 3.0423 38 1 4.3769 -1.3930 0.6309 39 1 4.3777 0.1486 1.5206 40 1 4.3772 -1.3924 2.4110 41 1 1.6636 -2.7111 3.5653 42 1 3.1173 -3.2252 2.6759 43 1 1.8271 -5.0694 1.6344 44 1 0.3738 -4.5549 2.5241 45 1 1.5500 -4.9484 4.6716 46 1 3.0029 -5.4629 3.7815 47 1 2.8634 -6.1738 5.7470 48 1 2.5668 -10.0495 7.5044 49 1 1.1505 -10.7941 5.6340 50 1 -0.3994 -8.6078 3.2710 51 1 0.6765 -9.8666 1.5497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12104242_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:30:36 Heat of formation + Delta-G solvation = -149.877860 kcal Electronic energy + Delta-G solvation = -27847.878743 eV Core-core repulsion = 23916.820776 eV Total energy + Delta-G solvation = -3931.057966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 404.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49302 -39.06625 -38.13847 -37.57401 -36.87064 -34.00805 -33.36164 -31.24747 -30.83780 -29.48153 -29.13650 -27.90049 -27.42139 -26.95792 -26.28373 -23.82697 -22.82772 -21.98403 -20.45904 -19.16894 -18.49263 -17.97359 -17.53933 -17.30202 -17.01762 -16.22166 -16.11625 -15.87648 -15.61840 -15.21911 -15.15477 -14.91054 -14.79072 -14.54037 -14.44191 -14.32993 -14.02670 -13.71915 -13.49603 -13.36654 -13.34734 -13.22878 -13.05649 -12.96757 -12.96367 -12.90543 -12.52781 -12.44080 -12.20200 -12.16748 -11.87247 -11.81685 -11.74538 -11.72949 -11.52554 -11.41290 -11.38425 -11.30911 -10.41989 -10.28938 -10.11394 -9.94345 -9.28747 -0.12739 0.23549 0.54553 1.11178 1.29802 1.40856 1.46664 1.69089 1.86711 2.00044 2.04925 2.38977 2.44183 3.38850 3.59875 3.74585 3.76816 3.88934 3.94473 3.97689 4.07505 4.08527 4.09488 4.16439 4.21472 4.24966 4.34944 4.40117 4.43975 4.61901 4.63416 4.65628 4.67672 4.68108 4.77978 4.82506 4.88519 4.95716 4.96762 4.99524 5.07357 5.07399 5.07601 5.16572 5.18629 5.30686 5.38000 5.38289 5.46855 5.47319 5.50339 5.55397 6.24589 6.62983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.623 6.623 9 C 0.089 3.911 10 C -0.122 4.122 11 C 0.054 3.946 12 O -0.295 6.295 13 C 0.165 3.835 14 C -0.184 4.184 15 C -0.046 4.046 16 Br -0.041 7.041 17 C -0.123 4.123 18 C -0.078 4.078 19 C -0.093 4.093 20 C -0.072 4.072 21 O -0.540 6.540 22 Si 0.942 3.058 23 H -0.253 1.253 24 H -0.246 1.246 25 H -0.247 1.247 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.079 0.921 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 0.610 -0.035 1.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.159 4.159 11 C -0.022 4.022 12 O -0.208 6.208 13 C 0.118 3.882 14 C -0.205 4.205 15 C -0.126 4.126 16 Br 0.045 6.955 17 C -0.143 4.143 18 C -0.097 4.097 19 C -0.095 4.095 20 C -0.182 4.182 21 O -0.346 6.346 22 Si 0.764 3.236 23 H -0.177 1.177 24 H -0.170 1.170 25 H -0.170 1.170 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.159 0.841 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.097 0.903 51 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.993 0.037 0.826 1.292 hybrid contribution 0.022 0.822 -0.499 0.962 sum -0.971 0.860 0.327 1.338 Atomic orbital electron populations 1.21514 0.93794 1.02025 1.01804 1.25781 1.00704 1.02634 1.12703 1.21556 1.00780 0.94897 1.02164 1.21514 1.00613 1.00265 0.96756 0.76704 0.63019 0.53327 0.65023 1.27037 1.07048 1.09535 1.17716 1.27038 1.25043 1.04785 1.04491 1.85331 1.79347 1.46077 1.47463 1.21800 0.98165 0.91506 0.87160 1.21500 1.03322 0.93119 0.97975 1.22791 0.98873 0.80833 0.99655 1.86133 1.70265 1.21645 1.42726 1.18567 0.93108 0.89581 0.86922 1.21199 1.03328 1.01076 0.94886 1.21607 0.99999 0.96111 0.94859 1.96799 1.66229 1.90334 1.42158 1.20977 0.99068 0.94501 0.99760 1.20956 0.96750 0.99047 0.92946 1.18743 1.02445 0.91440 0.96830 1.24571 0.96765 1.09381 0.87528 1.86526 1.36757 1.90605 1.20667 0.85849 0.79223 0.77006 0.81523 1.17696 1.17006 1.17020 0.92712 0.92771 0.92140 0.92511 0.92474 0.92521 0.92132 0.92770 0.92695 0.91496 0.90665 0.90834 0.90810 0.90675 0.91491 0.92377 0.92341 0.89439 0.89578 0.91487 0.91427 0.84100 0.84231 0.84344 0.90336 0.77336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.02 7.85 37.16 0.29 0.31 16 2 C -0.37 0.20 0.53 -90.62 -0.05 0.15 16 3 C -0.14 0.11 7.85 37.16 0.29 0.40 16 4 C -0.13 0.01 7.85 37.16 0.29 0.31 16 5 Si 1.29 -1.82 8.45 -169.99 -1.44 -3.26 16 6 C -0.51 0.58 8.50 101.05 0.86 1.44 16 7 C -0.51 0.53 8.50 101.05 0.86 1.39 16 8 O -0.62 0.13 8.56 -35.23 -0.30 -0.17 16 9 C 0.09 -0.15 5.12 37.16 0.19 0.04 16 10 C -0.12 0.13 5.95 -26.73 -0.16 -0.03 16 11 C 0.05 -0.06 4.74 37.15 0.18 0.12 16 12 O -0.29 -0.47 9.47 -19.43 -0.18 -0.65 16 13 C 0.17 0.33 6.66 -39.22 -0.26 0.07 16 14 C -0.18 -0.22 8.78 -39.41 -0.35 -0.56 16 15 C -0.05 -0.07 6.22 -39.54 -0.25 -0.31 16 16 Br -0.04 -0.04 33.70 -68.01 -2.29 -2.34 16 17 C -0.12 -0.11 9.78 -39.53 -0.39 -0.49 16 18 C -0.08 -0.07 8.66 -39.61 -0.34 -0.42 16 19 C -0.09 -0.17 5.31 -104.47 -0.55 -0.72 16 20 C -0.07 -0.02 2.37 36.01 0.09 0.07 16 21 O -0.54 -0.47 12.86 -35.23 -0.45 -0.92 16 22 Si 0.94 -0.69 25.48 -169.99 -4.33 -5.02 16 23 H -0.25 0.14 7.11 56.52 0.40 0.54 16 24 H -0.25 -0.01 6.74 56.52 0.38 0.37 16 25 H -0.25 0.05 7.11 56.52 0.40 0.45 16 26 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 28 H 0.06 0.00 7.96 -51.93 -0.41 -0.41 16 29 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.49 16 32 H 0.06 0.01 7.96 -51.93 -0.41 -0.41 16 33 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.05 -0.04 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.10 7.48 -51.93 -0.39 -0.49 16 36 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.47 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.45 16 39 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.10 7.48 -51.93 -0.39 -0.48 16 41 H 0.06 -0.18 7.21 -51.93 -0.37 -0.55 16 42 H 0.06 -0.17 7.21 -51.93 -0.37 -0.54 16 43 H 0.09 -0.03 8.14 -51.92 -0.42 -0.45 16 44 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 45 H 0.07 -0.16 7.66 -51.93 -0.40 -0.56 16 46 H 0.07 -0.13 7.66 -51.93 -0.40 -0.53 16 47 H 0.14 -0.08 6.30 -52.49 -0.33 -0.41 16 48 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 49 H 0.14 -0.10 4.88 -52.49 -0.26 -0.36 16 50 H 0.08 -0.05 7.83 -51.93 -0.41 -0.46 16 51 H 0.38 -1.32 8.74 45.56 0.40 -0.93 16 LS Contribution 423.61 15.07 6.38 6.38 Total: 0.00 -5.27 423.61 -10.25 -15.52 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -8.33 Total: -11.30 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.70 Total: 1.76 kcal Atomic # 8 Polarization: -0.81 SS G_CDS: -0.94 Total: -1.75 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: -5.77 Total: -8.28 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.29 Total: -2.34 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -5.27 -10.25 -15.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.355 kcal (2) G-P(sol) polarization free energy of solvation -5.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds