Wall clock time and date at job start Mon Mar 8 2021 12:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 C 1.53000 * 109.47243 * 239.99608 * 2 1 3 5 5 Si 1.86306 * 109.47109 * 119.99985 * 2 1 3 6 6 C 1.86300 * 109.46845 * 299.99933 * 5 2 1 7 7 C 1.86296 * 109.47179 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.46979 * 59.99880 * 5 2 1 9 9 C 1.42904 * 113.99859 * 180.02562 * 8 5 2 10 10 C 1.53004 * 109.47315 * 179.97438 * 9 8 5 11 11 C 1.52989 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.47297 * 180.02562 * 11 10 9 13 13 C 1.35903 * 117.00066 * 180.02562 * 12 11 10 14 14 C 1.38689 * 120.04780 * 0.02562 * 13 12 11 15 15 C 1.38256 * 119.93047 * 179.97438 * 14 13 12 16 16 Br 1.89098 * 119.98317 * 179.97438 * 15 14 13 17 17 C 1.38339 * 120.03603 * 0.02562 * 15 14 13 18 18 C 1.38272 * 120.10138 * 359.74534 * 17 15 14 19 19 C 1.38130 * 120.06299 * 0.50715 * 18 17 15 20 20 C 1.50699 * 120.01748 * 179.77049 * 19 18 17 21 21 O 1.42895 * 109.47044 * 254.72591 * 20 19 18 22 22 Si 1.86300 * 109.46944 * 14.72519 * 20 19 18 23 23 H 1.48503 * 109.46942 * 180.02562 * 22 20 19 24 24 H 1.48503 * 109.47276 * 299.99703 * 22 20 19 25 25 H 1.48494 * 109.47372 * 59.99692 * 22 20 19 26 26 H 1.09003 * 109.47383 * 300.00202 * 1 2 3 27 27 H 1.09007 * 109.47266 * 60.00179 * 1 2 3 28 28 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46836 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.46705 * 299.99569 * 3 2 1 31 31 H 1.08995 * 109.47075 * 59.99918 * 3 2 1 32 32 H 1.08998 * 109.47240 * 300.00233 * 4 2 1 33 33 H 1.09005 * 109.47302 * 60.00123 * 4 2 1 34 34 H 1.08999 * 109.47291 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47226 * 179.97438 * 6 5 2 36 36 H 1.08998 * 109.47186 * 299.99949 * 6 5 2 37 37 H 1.08999 * 109.47260 * 60.00100 * 6 5 2 38 38 H 1.08995 * 109.47137 * 300.00014 * 7 5 2 39 39 H 1.08998 * 109.47090 * 59.99905 * 7 5 2 40 40 H 1.08996 * 109.46853 * 179.97438 * 7 5 2 41 41 H 1.09002 * 109.46876 * 59.99862 * 9 8 5 42 42 H 1.08996 * 109.46883 * 299.99666 * 9 8 5 43 43 H 1.09008 * 109.46583 * 59.99724 * 10 9 8 44 44 H 1.09000 * 109.47083 * 300.00267 * 10 9 8 45 45 H 1.09000 * 109.47275 * 59.99790 * 11 10 9 46 46 H 1.09000 * 109.47511 * 300.00288 * 11 10 9 47 47 H 1.07999 * 120.04082 * 359.95841 * 14 13 12 48 48 H 1.08002 * 119.94562 * 180.02562 * 17 15 14 49 49 H 1.07998 * 119.96933 * 180.25525 * 18 17 15 50 50 H 1.09001 * 109.47358 * 134.71877 * 20 19 18 51 51 H 0.96705 * 114.00010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8783 1.5212 6 6 1.5300 0.0001 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6073 -2.4159 1.5212 9 6 2.0285 -3.1814 2.6521 10 6 1.4626 -4.5991 2.5478 11 6 1.9141 -5.4187 3.7582 12 8 1.3860 -6.7430 3.6605 13 6 1.6948 -7.6059 4.6640 14 6 2.4890 -7.1865 5.7208 15 6 2.8012 -8.0662 6.7406 16 35 3.8844 -7.4961 8.1819 17 6 2.3223 -9.3636 6.7067 18 6 1.5265 -9.7819 5.6562 19 6 1.2164 -8.9080 4.6324 20 6 0.3532 -9.3665 3.4853 21 8 1.1671 -9.5703 2.3287 22 14 -0.4886 -10.9646 3.9418 23 1 -1.3386 -11.4167 2.8112 24 1 0.5367 -11.9984 4.2337 25 1 -1.3343 -10.7529 5.1439 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.8929 -0.5140 3.9323 36 1 1.8933 1.0277 3.0422 37 1 0.4400 0.0001 3.0423 38 1 4.3769 -1.3930 0.6309 39 1 4.3777 0.1486 1.5206 40 1 4.3772 -1.3924 2.4110 41 1 1.6636 -2.7111 3.5653 42 1 3.1173 -3.2252 2.6759 43 1 1.8271 -5.0694 1.6344 44 1 0.3738 -4.5549 2.5241 45 1 1.5500 -4.9484 4.6716 46 1 3.0029 -5.4629 3.7815 47 1 2.8634 -6.1738 5.7470 48 1 2.5668 -10.0495 7.5044 49 1 1.1505 -10.7941 5.6340 50 1 -0.3994 -8.6078 3.2710 51 1 0.6765 -9.8666 1.5497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12104242_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:30:35 Heat of formation + Delta-G solvation = -140.853892 kcal Electronic energy + Delta-G solvation = -27847.487434 eV Core-core repulsion = 23916.820776 eV Total energy + Delta-G solvation = -3930.666658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 404.098 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.50781 -39.04420 -38.06101 -37.57655 -36.82224 -34.00194 -33.32945 -31.28300 -30.86436 -29.37327 -29.05660 -27.83713 -27.37334 -26.87120 -26.29356 -23.79796 -22.80217 -21.95609 -20.41182 -19.17713 -18.48533 -17.91678 -17.45959 -17.27854 -17.00667 -16.14250 -16.07371 -15.84710 -15.59378 -15.16834 -15.14942 -14.85722 -14.76388 -14.51622 -14.42892 -14.31815 -13.93964 -13.65806 -13.39705 -13.32826 -13.28879 -13.14572 -13.00439 -12.94898 -12.92663 -12.84904 -12.45968 -12.39247 -12.15264 -12.11914 -11.85337 -11.77563 -11.69934 -11.68661 -11.50056 -11.37034 -11.33304 -11.29032 -10.30733 -10.26299 -10.05055 -9.98755 -9.33038 -0.17799 0.19119 0.48275 1.15907 1.42745 1.47264 1.52761 1.79238 1.90341 2.10061 2.13336 2.35475 2.53383 3.43799 3.60597 3.80389 3.88755 3.94777 3.98084 4.08437 4.10982 4.13249 4.13488 4.24451 4.34923 4.39859 4.40997 4.46214 4.47462 4.64500 4.74781 4.75606 4.78731 4.79933 4.83189 4.83498 4.87485 5.00696 5.04205 5.06338 5.06980 5.09814 5.10225 5.16065 5.22504 5.35418 5.41638 5.45293 5.46295 5.55259 5.61261 5.65197 6.25103 6.83616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.317 2.683 6 C -0.518 4.518 7 C -0.519 4.519 8 O -0.640 6.640 9 C 0.080 3.920 10 C -0.117 4.117 11 C 0.049 3.951 12 O -0.309 6.309 13 C 0.152 3.848 14 C -0.187 4.187 15 C -0.057 4.057 16 Br -0.040 7.040 17 C -0.128 4.128 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.078 4.078 21 O -0.559 6.559 22 Si 0.979 3.021 23 H -0.254 1.254 24 H -0.257 1.257 25 H -0.254 1.254 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.151 0.849 50 H 0.083 0.917 51 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 0.690 0.646 1.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.619 4.619 7 C -0.620 4.620 8 O -0.599 6.599 9 C 0.004 3.996 10 C -0.155 4.155 11 C -0.026 4.026 12 O -0.222 6.222 13 C 0.105 3.895 14 C -0.207 4.207 15 C -0.137 4.137 16 Br 0.045 6.955 17 C -0.148 4.148 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.187 4.187 21 O -0.368 6.368 22 Si 0.802 3.198 23 H -0.178 1.178 24 H -0.182 1.182 25 H -0.178 1.178 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.173 0.827 48 H 0.172 0.828 49 H 0.169 0.831 50 H 0.101 0.899 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.768 0.130 1.481 1.673 hybrid contribution -0.050 0.811 -0.746 1.103 sum -0.818 0.940 0.735 1.447 Atomic orbital electron populations 1.21542 0.94285 1.01751 1.01841 1.25942 1.00396 1.03052 1.13243 1.21601 1.01275 0.94694 1.02210 1.21543 1.01006 1.00001 0.96892 0.76166 0.62447 0.52602 0.64044 1.27090 1.06889 1.09860 1.18101 1.27109 1.25328 1.05024 1.04587 1.85319 1.79715 1.46704 1.48187 1.22000 0.99123 0.91021 0.87420 1.21446 1.02898 0.93594 0.97542 1.22954 0.99463 0.79919 1.00241 1.86108 1.70653 1.22595 1.42887 1.18737 0.93588 0.89902 0.87287 1.21367 1.03050 1.01747 0.94567 1.21737 1.00362 0.96493 0.95084 1.96789 1.66228 1.90342 1.42104 1.21211 0.98783 0.94671 1.00108 1.21157 0.96782 0.99587 0.92812 1.19084 1.02809 0.91771 0.97568 1.24719 0.96524 1.10368 0.87107 1.86473 1.37894 1.90837 1.21612 0.85310 0.78157 0.75540 0.80816 1.17842 1.18159 1.17819 0.92046 0.93391 0.92560 0.91820 0.93193 0.91762 0.92585 0.93376 0.92119 0.90822 0.90394 0.91152 0.91258 0.90397 0.90874 0.90698 0.90945 0.90603 0.90227 0.89985 0.90527 0.82746 0.82843 0.83124 0.89899 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 2 C -0.38 0.28 0.53 -10.79 -0.01 0.28 16 3 C -0.14 0.22 7.85 71.98 0.56 0.78 16 4 C -0.14 -0.07 7.85 71.98 0.56 0.50 16 5 Si 1.32 -4.14 8.45 68.60 0.58 -3.56 16 6 C -0.52 1.57 8.50 113.37 0.96 2.53 16 7 C -0.52 1.39 8.50 113.37 0.96 2.35 16 8 O -0.64 0.30 8.56 -148.98 -1.28 -0.98 16 9 C 0.08 -0.30 5.12 71.98 0.37 0.07 16 10 C -0.12 0.23 5.95 30.59 0.18 0.41 16 11 C 0.05 -0.11 4.74 71.98 0.34 0.23 16 12 O -0.31 -1.13 9.47 -92.45 -0.88 -2.01 16 13 C 0.15 0.66 6.66 22.50 0.15 0.81 16 14 C -0.19 -0.44 8.78 22.38 0.20 -0.25 16 15 C -0.06 -0.16 6.22 22.30 0.14 -0.02 16 16 Br -0.04 -0.08 33.70 -20.37 -0.69 -0.76 16 17 C -0.13 -0.23 9.78 22.30 0.22 -0.01 16 18 C -0.08 -0.18 8.66 22.25 0.19 0.02 16 19 C -0.11 -0.45 5.31 -19.77 -0.10 -0.55 16 20 C -0.08 -0.07 2.37 71.24 0.17 0.10 16 21 O -0.56 -1.22 12.86 -148.98 -1.92 -3.13 16 22 Si 0.98 -1.51 25.48 68.60 1.75 0.23 16 23 H -0.25 0.40 7.11 99.48 0.71 1.10 16 24 H -0.26 -0.01 6.74 99.48 0.67 0.66 16 25 H -0.25 0.13 7.11 99.48 0.71 0.84 16 26 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 27 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 28 H 0.06 0.05 7.96 -2.39 -0.02 0.04 16 29 H 0.06 -0.19 7.79 -2.39 -0.02 -0.21 16 30 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 32 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 33 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 34 H 0.06 -0.06 7.79 -2.39 -0.02 -0.07 16 35 H 0.07 -0.32 7.48 -2.39 -0.02 -0.34 16 36 H 0.08 -0.27 7.79 -2.39 -0.02 -0.29 16 37 H 0.07 -0.15 7.79 -2.39 -0.02 -0.17 16 38 H 0.07 -0.11 7.79 -2.39 -0.02 -0.13 16 39 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 40 H 0.07 -0.28 7.48 -2.39 -0.02 -0.30 16 41 H 0.07 -0.54 7.21 -2.39 -0.02 -0.56 16 42 H 0.07 -0.49 7.21 -2.39 -0.02 -0.50 16 43 H 0.08 0.02 8.14 -2.38 -0.02 0.00 16 44 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.08 -0.45 7.66 -2.39 -0.02 -0.47 16 46 H 0.08 -0.32 7.66 -2.39 -0.02 -0.34 16 47 H 0.15 -0.24 6.30 -2.91 -0.02 -0.26 16 48 H 0.15 -0.30 8.06 -2.91 -0.02 -0.32 16 49 H 0.15 -0.21 4.88 -2.91 -0.01 -0.22 16 50 H 0.08 -0.06 7.83 -2.39 -0.02 -0.08 16 51 H 0.40 -2.64 8.74 -74.05 -0.65 -3.29 16 Total: 0.00 -11.93 423.61 4.01 -7.92 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: 0.97 Total: -5.48 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.47 Total: 7.77 kcal Atomic # 8 Polarization: -2.05 SS G_CDS: -4.07 Total: -6.12 kcal Atomic # 14 Polarization: -5.65 SS G_CDS: 2.33 Total: -3.32 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -0.69 Total: -0.76 kcal Total: -11.93 4.01 -7.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.936 kcal (2) G-P(sol) polarization free energy of solvation -11.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds