Wall clock time and date at job start Mon Mar 8 2021 14:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86292 * 109.47424 * 2 1 4 4 C 1.86300 * 109.46850 * 239.99937 * 2 1 3 5 5 C 1.86804 * 109.47095 * 120.00301 * 2 1 3 6 6 C 1.38236 * 119.99833 * 89.99560 * 5 2 1 7 7 C 1.38241 * 119.99639 * 180.02562 * 6 5 2 8 8 C 1.38238 * 119.99927 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99795 * 179.97438 * 8 7 6 10 10 O 1.42899 * 109.47256 * 89.99926 * 9 8 7 11 11 C 1.35896 * 117.00275 * 179.97438 * 10 9 8 12 12 C 1.38692 * 120.04923 * 0.02578 * 11 10 9 13 13 C 1.38252 * 119.93504 * 179.97438 * 12 11 10 14 14 Br 1.89102 * 119.98399 * 179.97438 * 13 12 11 15 15 C 1.38339 * 120.03692 * 0.02562 * 13 12 11 16 16 C 1.38269 * 120.09687 * 359.74252 * 15 13 12 17 17 C 1.38133 * 120.06850 * 0.51500 * 16 15 13 18 18 C 1.50697 * 120.02063 * 179.76875 * 17 16 15 19 19 O 1.42906 * 109.46831 * 254.72253 * 18 17 16 20 20 Si 1.86300 * 109.47007 * 14.71642 * 18 17 16 21 21 H 1.48503 * 109.46942 * 60.00611 * 20 18 17 22 22 H 1.48503 * 109.47276 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47372 * 300.00074 * 20 18 17 24 24 C 1.38238 * 119.99982 * 0.25409 * 8 7 6 25 25 C 1.38230 * 119.99720 * 359.49183 * 24 8 7 26 26 H 1.09000 * 109.46989 * 299.99992 * 1 2 3 27 27 H 1.08996 * 109.47410 * 59.99684 * 1 2 3 28 28 H 1.08999 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47120 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.47509 * 300.00247 * 3 2 1 31 31 H 1.09000 * 109.47031 * 60.00034 * 3 2 1 32 32 H 1.08999 * 109.47321 * 300.00206 * 4 2 1 33 33 H 1.08999 * 109.47427 * 60.00403 * 4 2 1 34 34 H 1.09005 * 109.47257 * 180.02562 * 4 2 1 35 35 H 1.07996 * 120.00148 * 0.02562 * 6 5 2 36 36 H 1.08001 * 119.99802 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.46897 * 329.99929 * 9 8 7 38 38 H 1.08997 * 109.46952 * 210.00531 * 9 8 7 39 39 H 1.08007 * 120.03306 * 359.95093 * 12 11 10 40 40 H 1.07999 * 119.95178 * 180.02562 * 15 13 12 41 41 H 1.08000 * 119.96715 * 180.25162 * 16 15 13 42 42 H 1.09000 * 109.47374 * 134.71826 * 18 17 16 43 43 H 0.96693 * 114.00047 * 60.00191 * 19 18 17 44 44 H 1.07996 * 119.99527 * 179.72126 * 24 8 7 45 45 H 1.08003 * 119.99495 * 180.23420 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7563 0.0000 4 6 2.4839 -0.8783 -1.5211 5 6 2.4856 -0.8807 1.5252 6 6 2.7159 -2.2433 1.4909 7 6 3.1762 -2.8951 2.6198 8 6 3.4057 -2.1843 3.7830 9 6 3.9069 -2.8950 5.0138 10 8 5.3359 -2.8951 5.0150 11 6 5.9519 -3.5003 6.0643 12 6 5.1967 -4.0823 7.0715 13 6 5.8259 -4.6978 8.1376 14 35 4.7974 -5.4912 9.5120 15 6 7.2074 -4.7327 8.2001 16 6 7.9617 -4.1571 7.1944 17 6 7.3375 -3.5364 6.1300 18 6 8.1607 -2.9048 5.0371 19 8 8.1279 -1.4830 5.1773 20 14 9.9214 -3.5007 5.1627 21 1 9.9554 -4.9782 5.0170 22 1 10.7328 -2.8779 4.0861 23 1 10.4794 -3.1207 6.4852 24 6 3.1698 -0.8226 3.8189 25 6 2.7146 -0.1701 2.6886 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.5741 1.7563 0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1205 -1.9059 -1.5212 33 1 2.1206 -0.3644 -2.4111 34 1 3.5739 -0.8787 -1.5210 35 1 2.5363 -2.7986 0.5822 36 1 3.3558 -3.9597 2.5931 37 1 3.5435 -3.9225 5.0133 38 1 3.5428 -2.3813 5.9035 39 1 4.1180 -4.0544 7.0232 40 1 7.6975 -5.2142 9.0334 41 1 9.0401 -4.1891 7.2433 42 1 7.7511 -3.1838 4.0662 43 1 8.4783 -1.1627 6.0196 44 1 3.3448 -0.2682 4.7290 45 1 2.5340 0.8944 2.7156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12104242_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:58:09 Heat of formation + Delta-G solvation = -51.360656 kcal Electronic energy + Delta-G solvation = -25368.314427 eV Core-core repulsion = 21713.918974 eV Total energy + Delta-G solvation = -3654.395453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.63527 -40.10602 -38.65512 -37.63497 -33.83532 -33.03082 -31.88879 -31.29663 -30.84633 -29.43853 -28.29698 -28.27193 -27.45034 -26.39679 -23.83391 -23.49566 -22.68482 -21.87786 -19.41836 -18.37134 -17.67558 -17.22800 -17.20448 -16.69760 -16.15265 -16.04414 -15.72704 -15.44056 -15.25918 -14.76609 -14.57799 -14.34985 -14.07663 -14.05228 -14.04137 -13.82453 -13.72751 -13.47134 -13.35356 -13.13905 -13.11739 -12.96909 -12.83061 -12.56714 -12.51347 -12.20930 -11.97497 -11.91823 -11.69186 -11.55507 -11.39458 -10.92743 -10.78211 -10.76088 -10.40325 -10.02884 -9.81120 -9.69588 -9.36988 -0.20847 0.14669 0.15836 0.46150 0.51688 1.13705 1.42269 1.52645 1.83150 1.90796 1.96432 2.02181 2.25771 2.34401 2.66533 3.00559 3.47935 3.52206 3.69325 3.73848 3.77545 3.89205 4.00508 4.10237 4.21057 4.23164 4.33111 4.39070 4.52098 4.64425 4.70293 4.84545 4.84730 4.86235 4.88556 4.89130 4.89657 4.90671 4.99378 5.02324 5.09071 5.15159 5.39184 5.42801 5.55867 5.59017 5.59095 5.67782 5.70468 6.11387 6.19550 6.72070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.125 2.875 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.373 4.373 6 C -0.103 4.103 7 C -0.121 4.121 8 C -0.103 4.103 9 C 0.096 3.904 10 O -0.305 6.305 11 C 0.151 3.849 12 C -0.189 4.189 13 C -0.056 4.056 14 Br -0.042 7.042 15 C -0.126 4.126 16 C -0.081 4.081 17 C -0.146 4.146 18 C -0.076 4.076 19 O -0.550 6.550 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.275 1.275 23 H -0.234 1.234 24 C -0.120 4.120 25 C -0.104 4.104 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.107 0.893 43 H 0.387 0.613 44 H 0.125 0.875 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 0.234 -0.682 0.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.412 4.412 6 C -0.121 4.121 7 C -0.139 4.139 8 C -0.103 4.103 9 C 0.022 3.978 10 O -0.219 6.219 11 C 0.104 3.896 12 C -0.209 4.209 13 C -0.135 4.135 14 Br 0.043 6.957 15 C -0.146 4.146 16 C -0.100 4.100 17 C -0.147 4.147 18 C -0.185 4.185 19 O -0.356 6.356 20 Si 0.807 3.193 21 H -0.177 1.177 22 H -0.200 1.200 23 H -0.157 1.157 24 C -0.138 4.138 25 C -0.121 4.121 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.125 0.875 43 H 0.235 0.765 44 H 0.143 0.857 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.115 -0.335 -0.786 0.862 hybrid contribution -0.332 0.097 0.616 0.707 sum -0.217 -0.238 -0.170 0.364 Atomic orbital electron populations 1.26260 1.21337 1.04525 1.04618 0.77197 0.65335 0.64583 0.61618 1.26289 1.06337 1.19495 1.04888 1.26274 1.06350 1.08525 1.15765 1.28071 1.02363 0.99643 1.11149 1.21393 0.97349 0.95193 0.98172 1.21373 0.99191 1.00468 0.92895 1.19576 1.01373 0.94508 0.94812 1.21786 0.77970 1.01070 0.96947 1.86250 1.21658 1.72458 1.41520 1.18811 0.91792 0.92104 0.86926 1.21328 1.01193 1.03456 0.94932 1.21742 0.95033 1.01672 0.95088 1.96799 1.70805 1.80760 1.47311 1.21245 0.91321 1.01357 1.00639 1.21203 1.01144 0.95587 0.92044 1.20001 0.91525 1.03868 0.99317 1.25021 1.09960 0.84350 0.99199 1.86547 1.87327 1.18867 1.42899 0.85232 0.73237 0.79814 0.81014 1.17659 1.19999 1.15673 1.21353 0.99097 0.93783 0.99610 1.21378 0.97404 1.00704 0.92641 0.91370 0.90602 0.91320 0.91463 0.90572 0.90934 0.90848 0.90578 0.91424 0.84201 0.85399 0.89971 0.90222 0.83495 0.82711 0.82448 0.87518 0.76478 0.85726 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.56 8.65 113.37 0.98 2.54 16 2 Si 1.13 -5.65 12.32 68.60 0.85 -4.80 16 3 C -0.46 1.56 8.53 113.37 0.97 2.53 16 4 C -0.46 1.69 8.53 113.37 0.97 2.66 16 5 C -0.37 -0.14 4.59 22.27 0.10 -0.04 16 6 C -0.10 -0.15 9.29 22.27 0.21 0.06 16 7 C -0.12 -0.40 9.70 22.27 0.22 -0.19 16 8 C -0.10 -0.44 5.51 -19.86 -0.11 -0.55 16 9 C 0.10 0.22 4.87 71.24 0.35 0.57 16 10 O -0.31 -1.90 9.45 -92.38 -0.87 -2.77 16 11 C 0.15 0.68 6.66 22.50 0.15 0.82 16 12 C -0.19 -0.53 8.78 22.38 0.20 -0.33 16 13 C -0.06 -0.13 6.22 22.30 0.14 0.01 16 14 Br -0.04 -0.09 33.70 -20.37 -0.69 -0.78 16 15 C -0.13 -0.01 9.78 22.30 0.22 0.20 16 16 C -0.08 0.05 8.66 22.25 0.19 0.24 16 17 C -0.15 -0.35 5.27 -19.77 -0.10 -0.46 16 18 C -0.08 -0.13 2.38 71.23 0.17 0.03 16 19 O -0.55 -1.92 12.88 -148.98 -1.92 -3.84 16 20 Si 0.99 -1.37 25.48 68.60 1.75 0.38 16 21 H -0.25 0.14 7.11 99.48 0.71 0.85 16 22 H -0.27 -0.71 7.11 99.48 0.71 -0.01 16 23 H -0.23 0.96 6.74 99.48 0.67 1.63 16 24 C -0.12 -0.48 9.70 22.27 0.22 -0.26 16 25 C -0.10 -0.20 9.29 22.27 0.21 0.01 16 26 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 28 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 29 H 0.07 -0.15 7.96 -2.38 -0.02 -0.16 16 30 H 0.08 -0.30 7.96 -2.38 -0.02 -0.32 16 31 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 32 H 0.07 -0.31 7.69 -2.39 -0.02 -0.33 16 33 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 34 H 0.07 -0.17 7.96 -2.38 -0.02 -0.19 16 35 H 0.14 -0.41 7.43 -2.91 -0.02 -0.44 16 36 H 0.13 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.08 -0.04 7.61 -2.39 -0.02 -0.05 16 38 H 0.08 0.01 7.60 -2.39 -0.02 -0.01 16 39 H 0.15 0.06 6.30 -2.91 -0.02 0.04 16 40 H 0.16 -0.56 8.06 -2.91 -0.02 -0.58 16 41 H 0.16 -0.80 4.88 -2.91 -0.01 -0.81 16 42 H 0.11 0.37 7.83 -2.39 -0.02 0.35 16 43 H 0.39 -1.57 8.70 -74.06 -0.64 -2.21 16 44 H 0.12 0.24 8.06 -2.91 -0.02 0.21 16 45 H 0.14 -0.31 7.43 -2.91 -0.02 -0.33 16 Total: 0.00 -12.89 394.27 5.25 -7.64 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: 1.07 Total: -3.68 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.06 Total: 7.84 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -2.79 Total: -6.61 kcal Atomic # 14 Polarization: -7.02 SS G_CDS: 2.59 Total: -4.42 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.69 Total: -0.78 kcal Total: -12.89 5.25 -7.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12104242_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.716 kcal (2) G-P(sol) polarization free energy of solvation -12.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds