Wall clock time and date at job start Mon Mar 8 2021 13:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46849 * 2 1 4 4 C 1.53000 * 109.47408 * 240.00004 * 2 1 3 5 5 Si 1.86298 * 109.47174 * 119.99898 * 2 1 3 6 6 C 1.86297 * 109.47246 * 300.00198 * 5 2 1 7 7 C 1.86306 * 109.47205 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.47271 * 60.00156 * 5 2 1 9 9 C 1.42897 * 114.00192 * 179.97438 * 8 5 2 10 10 C 1.52996 * 109.47260 * 180.02562 * 9 8 5 11 11 C 1.53006 * 109.47200 * 180.02562 * 10 9 8 12 12 O 1.42901 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.35946 * 116.99755 * 179.97438 * 12 11 10 14 14 C 1.38681 * 120.03217 * 0.02562 * 13 12 11 15 15 C 1.38169 * 119.97280 * 179.97438 * 14 13 12 16 16 C 1.38439 * 120.02798 * 359.97429 * 15 14 13 17 17 F 1.35101 * 119.97138 * 179.97438 * 16 15 14 18 18 C 1.38480 * 120.05793 * 359.79567 * 16 15 14 19 19 C 1.38130 * 120.02920 * 0.45935 * 18 16 15 20 20 C 1.50701 * 120.01362 * 179.79588 * 19 18 16 21 21 O 1.42895 * 109.47079 * 254.72679 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.72175 * 20 19 18 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 H 1.08994 * 109.47066 * 299.99822 * 1 2 3 27 27 H 1.09000 * 109.46976 * 60.00780 * 1 2 3 28 28 H 1.09006 * 109.46496 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46980 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47259 * 299.99819 * 3 2 1 31 31 H 1.09003 * 109.46946 * 60.00163 * 3 2 1 32 32 H 1.08993 * 109.47040 * 299.99980 * 4 2 1 33 33 H 1.08995 * 109.47062 * 59.99960 * 4 2 1 34 34 H 1.09001 * 109.46986 * 180.02562 * 4 2 1 35 35 H 1.08999 * 109.47709 * 179.97438 * 6 5 2 36 36 H 1.09006 * 109.47574 * 300.00260 * 6 5 2 37 37 H 1.09007 * 109.47181 * 59.99867 * 6 5 2 38 38 H 1.08995 * 109.46974 * 299.99601 * 7 5 2 39 39 H 1.08993 * 109.47344 * 59.99880 * 7 5 2 40 40 H 1.08995 * 109.47073 * 180.02562 * 7 5 2 41 41 H 1.09005 * 109.47317 * 59.99941 * 9 8 5 42 42 H 1.09003 * 109.47367 * 300.00390 * 9 8 5 43 43 H 1.08996 * 109.47474 * 59.99510 * 10 9 8 44 44 H 1.09008 * 109.46862 * 299.99835 * 10 9 8 45 45 H 1.08992 * 109.47017 * 59.99867 * 11 10 9 46 46 H 1.08997 * 109.46567 * 299.99303 * 11 10 9 47 47 H 1.08003 * 120.01205 * 359.97438 * 14 13 12 48 48 H 1.07999 * 119.99014 * 179.97438 * 15 14 13 49 49 H 1.08000 * 119.98197 * 180.25620 * 18 16 15 50 50 H 1.09001 * 109.47380 * 134.72076 * 20 19 18 51 51 H 0.96708 * 113.99763 * 299.99687 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0422 7 6 4.0141 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5212 9 6 2.0295 -3.1817 2.6514 10 6 1.4647 -4.5997 2.5465 11 6 1.9162 -5.4193 3.7571 12 8 1.3881 -6.7436 3.6594 13 6 1.6979 -7.6071 4.6627 14 6 2.4929 -7.1876 5.7187 15 6 2.8065 -8.0661 6.7380 16 6 2.3270 -9.3644 6.7057 17 9 2.6348 -10.2225 7.7027 18 6 1.5292 -9.7832 5.6542 19 6 1.2185 -8.9085 4.6312 20 6 0.3540 -9.3659 3.4847 21 8 1.1666 -9.5696 2.3271 22 14 -0.4882 -10.9639 3.9411 23 1 -1.3327 -10.7524 5.1442 24 1 0.5369 -11.9984 4.2316 25 1 -1.3396 -11.4150 2.8111 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3632 -1.0278 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6768 -1.7488 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1301 -0.7216 -1.2489 35 1 1.8929 -0.5140 3.9323 36 1 1.8932 1.0277 3.0423 37 1 0.4399 0.0000 3.0423 38 1 4.3777 -1.3911 0.6316 39 1 4.3770 0.1502 1.5217 40 1 4.3774 -1.3917 2.4112 41 1 1.6654 -2.7118 3.5651 42 1 3.1184 -3.2254 2.6745 43 1 1.8291 -5.0693 1.6329 44 1 0.3758 -4.5562 2.5233 45 1 1.5514 -4.9496 4.6704 46 1 3.0050 -5.4628 3.7806 47 1 2.8667 -6.1747 5.7444 48 1 3.4259 -7.7398 7.5604 49 1 1.1524 -10.7951 5.6323 50 1 -0.3985 -8.6067 3.2715 51 1 1.6363 -8.7774 2.0320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:58:23 Heat of formation + Delta-G solvation = -194.401040 kcal Electronic energy + Delta-G solvation = -28156.265014 eV Core-core repulsion = 24093.640405 eV Total energy + Delta-G solvation = -4062.624609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.91301 -41.47470 -38.90136 -38.00303 -37.43329 -36.81235 -33.55975 -32.84502 -30.51332 -29.35341 -29.04064 -27.83057 -27.36190 -26.95206 -26.72407 -23.84598 -22.87746 -22.16876 -20.40376 -19.41631 -18.65134 -18.30207 -17.71509 -17.48774 -17.36837 -16.65523 -16.28005 -16.07090 -15.92866 -15.78133 -15.52577 -15.24692 -15.11786 -14.84799 -14.72276 -14.53638 -14.11729 -13.93801 -13.87261 -13.71410 -13.45085 -13.35387 -13.16044 -12.99616 -12.94205 -12.92001 -12.77446 -12.72673 -12.37952 -12.25827 -12.21172 -11.89769 -11.80782 -11.68398 -11.62703 -11.31068 -11.28129 -11.21127 -11.08624 -10.28154 -10.22427 -10.03923 -9.18924 -0.04436 0.06887 1.16194 1.44666 1.47097 1.49233 1.80729 1.92163 2.09220 2.15555 2.37675 2.54530 3.16040 3.46700 3.58703 3.88117 3.93585 3.95969 4.02260 4.11228 4.13316 4.13948 4.14613 4.24839 4.41299 4.47270 4.47708 4.49646 4.57286 4.66025 4.76801 4.77481 4.80419 4.81852 4.83815 4.84037 4.98225 5.01341 5.01667 5.07891 5.10419 5.10777 5.11849 5.13806 5.23851 5.36552 5.42390 5.46245 5.57372 5.58602 5.64070 5.67061 6.26338 6.64523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.387 4.387 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.322 2.678 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.078 3.922 10 C -0.121 4.121 11 C 0.050 3.950 12 O -0.316 6.316 13 C 0.134 3.866 14 C -0.172 4.172 15 C -0.105 4.105 16 C 0.046 3.954 17 F -0.149 7.149 18 C -0.131 4.131 19 C -0.130 4.130 20 C -0.081 4.081 21 O -0.549 6.549 22 Si 1.026 2.974 23 H -0.241 1.241 24 H -0.266 1.266 25 H -0.267 1.267 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.172 0.828 48 H 0.161 0.839 49 H 0.142 0.858 50 H 0.092 0.908 51 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 5.205 1.521 5.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.452 2.548 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.002 3.998 10 C -0.158 4.158 11 C -0.024 4.024 12 O -0.230 6.230 13 C 0.088 3.912 14 C -0.190 4.190 15 C -0.124 4.124 16 C 0.027 3.973 17 F -0.128 7.128 18 C -0.150 4.150 19 C -0.131 4.131 20 C -0.190 4.190 21 O -0.356 6.356 22 Si 0.848 3.152 23 H -0.164 1.164 24 H -0.191 1.191 25 H -0.192 1.192 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.189 0.811 48 H 0.179 0.821 49 H 0.159 0.841 50 H 0.110 0.890 51 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.572 3.620 1.495 3.958 hybrid contribution 0.815 1.361 0.078 1.588 sum 1.387 4.981 1.573 5.404 Atomic orbital electron populations 1.21542 0.94383 1.01743 1.01761 1.25996 1.00333 1.03056 1.13489 1.21603 1.01285 0.94777 1.02135 1.21540 1.01021 1.00018 0.96851 0.76073 0.62434 0.52583 0.63754 1.27110 1.06833 1.09842 1.18245 1.27103 1.25232 1.04993 1.04685 1.85326 1.79692 1.46639 1.48348 1.22031 0.99261 0.91120 0.87338 1.21479 1.02816 0.93630 0.97904 1.22985 0.99861 0.79397 1.00154 1.86025 1.71114 1.22910 1.42972 1.18807 0.94636 0.89163 0.88576 1.21458 1.01299 1.02366 0.93925 1.21283 0.99807 0.90881 1.00428 1.17733 1.02296 0.89342 0.87918 1.91489 1.91854 1.69954 1.59504 1.21054 0.99406 1.00819 0.93721 1.19508 1.03411 0.91925 0.98290 1.25178 0.95882 1.13080 0.84846 1.86670 1.64717 1.40096 1.44155 0.84299 0.77714 0.73777 0.79425 1.16444 1.19083 1.19220 0.92069 0.93557 0.92516 0.91784 0.93344 0.91792 0.92509 0.93556 0.92064 0.90663 0.90527 0.91269 0.91250 0.90531 0.90656 0.90767 0.90695 0.90271 0.90557 0.89750 0.89580 0.81102 0.82100 0.84069 0.88981 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 7.85 71.98 0.56 0.63 16 2 C -0.39 0.68 0.53 -10.79 -0.01 0.67 16 3 C -0.14 0.33 7.85 71.98 0.56 0.89 16 4 C -0.14 0.06 7.85 71.98 0.56 0.63 16 5 Si 1.32 -6.44 8.45 68.60 0.58 -5.86 16 6 C -0.52 2.38 8.50 113.37 0.96 3.34 16 7 C -0.52 2.39 8.50 113.37 0.96 3.35 16 8 O -0.64 1.76 8.56 -148.98 -1.28 0.48 16 9 C 0.08 -0.55 5.12 71.98 0.37 -0.18 16 10 C -0.12 0.74 5.95 30.59 0.18 0.92 16 11 C 0.05 -0.40 4.74 71.98 0.34 -0.06 16 12 O -0.32 0.77 9.04 -92.94 -0.84 -0.07 16 13 C 0.13 -0.06 6.62 22.49 0.15 0.09 16 14 C -0.17 0.61 9.04 22.36 0.20 0.81 16 15 C -0.11 0.12 10.02 22.30 0.22 0.34 16 16 C 0.05 0.18 7.30 22.38 0.16 0.35 16 17 F -0.15 -1.03 17.27 44.97 0.78 -0.26 16 18 C -0.13 -0.53 8.64 22.30 0.19 -0.34 16 19 C -0.13 -0.32 5.28 -19.77 -0.10 -0.42 16 20 C -0.08 -0.16 2.33 71.24 0.17 0.01 16 21 O -0.55 -2.02 12.65 -148.98 -1.89 -3.91 16 22 Si 1.03 2.54 25.73 68.60 1.77 4.30 16 23 H -0.24 -0.31 7.11 99.48 0.71 0.40 16 24 H -0.27 -1.23 6.74 99.48 0.67 -0.56 16 25 H -0.27 -1.24 7.11 99.48 0.71 -0.53 16 26 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 27 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.06 0.01 7.97 -2.38 -0.02 -0.01 16 29 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 30 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 -0.25 7.79 -2.39 -0.02 -0.27 16 32 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 33 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 35 H 0.07 -0.47 7.48 -2.39 -0.02 -0.49 16 36 H 0.08 -0.36 7.79 -2.38 -0.02 -0.38 16 37 H 0.07 -0.24 7.79 -2.38 -0.02 -0.26 16 38 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 39 H 0.08 -0.36 7.79 -2.39 -0.02 -0.38 16 40 H 0.07 -0.47 7.48 -2.39 -0.02 -0.49 16 41 H 0.07 -0.77 7.21 -2.38 -0.02 -0.79 16 42 H 0.08 -0.79 7.21 -2.39 -0.02 -0.80 16 43 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 45 H 0.08 -0.93 7.66 -2.39 -0.02 -0.94 16 46 H 0.09 -0.97 7.66 -2.39 -0.02 -0.99 16 47 H 0.17 -1.73 6.30 -2.91 -0.02 -1.75 16 48 H 0.16 -0.89 8.06 -2.91 -0.02 -0.91 16 49 H 0.14 0.45 4.89 -2.91 -0.01 0.44 16 50 H 0.09 -0.05 7.83 -2.39 -0.02 -0.07 16 51 H 0.38 -0.44 8.60 -74.05 -0.64 -1.08 16 Total: 0.00 -11.29 408.10 5.60 -5.69 By element: Atomic # 1 Polarization: -12.39 SS G_CDS: 0.98 Total: -11.41 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.50 Total: 11.03 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: -4.00 Total: -3.50 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.78 Total: -0.26 kcal Atomic # 14 Polarization: -3.90 SS G_CDS: 2.35 Total: -1.55 kcal Total: -11.29 5.60 -5.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.715 kcal (2) G-P(sol) polarization free energy of solvation -11.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds