Wall clock time and date at job start Mon Mar 8 2021 13:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35939 * 117.00355 * 180.02562 * 10 9 8 12 12 C 1.38682 * 120.02773 * 359.72111 * 11 10 9 13 13 C 1.38179 * 119.96891 * 179.74883 * 12 11 10 14 14 C 1.38428 * 120.02906 * 0.52792 * 13 12 11 15 15 F 1.35105 * 119.97205 * 179.76758 * 14 13 12 16 16 C 1.38479 * 120.05852 * 359.74948 * 14 13 12 17 17 C 1.38123 * 120.03223 * 359.97438 * 16 14 13 18 18 C 1.50700 * 120.01715 * 179.97438 * 17 16 14 19 19 O 1.42907 * 109.47004 * 105.02010 * 18 17 16 20 20 Si 1.86304 * 109.46958 * 345.02252 * 18 17 16 21 21 H 1.48498 * 109.47199 * 59.99693 * 20 18 17 22 22 H 1.48501 * 109.47121 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46949 * 299.99472 * 20 18 17 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.08000 * 120.01711 * 0.02562 * 12 11 10 40 40 H 1.08003 * 119.98750 * 180.28002 * 13 12 11 41 41 H 1.08001 * 119.98495 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47044 * 225.02022 * 18 17 16 43 43 H 0.96695 * 113.99701 * 60.00114 * 19 18 17 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9376 -3.5044 6.0753 12 6 5.1776 -4.0820 7.0813 13 6 5.8005 -4.7034 8.1467 14 6 7.1826 -4.7399 8.2157 15 9 7.7905 -5.3437 9.2604 16 6 7.9427 -4.1585 7.2148 17 6 7.3226 -3.5417 6.1458 18 6 8.1501 -2.9086 5.0570 19 8 8.1236 -3.7393 3.8945 20 14 9.9078 -2.7181 5.6442 21 1 10.4659 -4.0533 5.9772 22 1 10.7234 -2.0948 4.5711 23 1 9.9353 -1.8548 6.8521 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0993 -4.0501 7.0297 40 1 5.2089 -5.1572 8.9280 41 1 9.0209 -4.1873 7.2700 42 1 7.7404 -1.9286 4.8126 43 1 7.2381 -3.8822 3.5333 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12398896_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:17:15 Heat of formation + Delta-G solvation = -114.208413 kcal Electronic energy + Delta-G solvation = -25700.338778 eV Core-core repulsion = 21913.582069 eV Total energy + Delta-G solvation = -3786.756709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.78050 -41.58442 -40.12133 -38.47672 -37.37398 -33.30739 -32.80019 -31.96257 -30.52720 -29.61329 -28.48712 -28.46039 -27.49165 -26.86350 -23.85307 -23.56468 -22.78316 -21.99687 -19.48442 -18.59469 -18.39161 -17.70793 -17.37622 -17.17563 -16.48943 -16.32023 -16.00206 -15.75321 -15.58691 -15.44577 -15.14727 -14.55957 -14.43832 -14.30747 -14.22622 -14.10949 -14.01537 -13.90121 -13.68198 -13.43570 -13.32435 -13.30286 -13.26310 -13.14650 -12.86986 -12.50251 -12.24151 -12.13358 -11.85118 -11.76547 -11.23055 -11.08754 -11.03286 -10.95156 -10.89884 -10.22521 -9.85881 -9.77411 -9.18313 -0.04953 0.07798 0.09230 0.46953 1.22231 1.53740 1.58253 1.64314 1.79803 1.80764 2.00599 2.12989 2.37896 2.49214 2.93854 3.18600 3.41950 3.54226 3.68281 3.68992 3.86981 3.92479 4.00748 4.05354 4.12523 4.17981 4.30522 4.43197 4.52047 4.60573 4.65817 4.66833 4.66951 4.70787 4.71464 4.71826 4.71980 4.91765 4.95646 5.00250 5.07312 5.08499 5.32706 5.40991 5.45083 5.49277 5.53177 5.55872 5.56454 6.02900 6.16447 6.60887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.100 3.900 10 O -0.304 6.304 11 C 0.133 3.867 12 C -0.178 4.178 13 C -0.107 4.107 14 C 0.070 3.930 15 F -0.136 7.136 16 C -0.119 4.119 17 C -0.117 4.117 18 C -0.082 4.082 19 O -0.535 6.535 20 Si 1.010 2.990 21 H -0.251 1.251 22 H -0.252 1.252 23 H -0.247 1.247 24 C -0.105 4.105 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.370 0.630 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 1.891 -1.447 4.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.091 4.091 9 C 0.025 3.975 10 O -0.218 6.218 11 C 0.088 3.912 12 C -0.196 4.196 13 C -0.126 4.126 14 C 0.051 3.949 15 F -0.115 7.115 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.191 4.191 19 O -0.341 6.341 20 Si 0.830 3.170 21 H -0.175 1.175 22 H -0.176 1.176 23 H -0.170 1.170 24 C -0.124 4.124 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.161 0.839 42 H 0.099 0.901 43 H 0.218 0.782 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.465 2.017 -1.137 3.382 hybrid contribution -1.354 -0.421 0.367 1.465 sum -3.819 1.596 -0.770 4.210 Atomic orbital electron populations 1.26125 1.20423 1.04592 1.04535 0.78189 0.66846 0.66149 0.63690 1.26139 1.06520 1.18530 1.04591 1.26138 1.06529 1.08042 1.15064 1.27493 1.02841 0.99535 1.10204 1.21089 0.97382 0.94661 0.97771 1.21146 0.98785 0.99903 0.92509 1.19414 1.01280 0.94144 0.94260 1.21698 0.78298 1.00601 0.96874 1.86144 1.21306 1.72742 1.41641 1.18757 0.91314 0.93489 0.87678 1.21144 1.00601 1.02758 0.95133 1.21014 0.92710 0.99677 0.99226 1.17454 0.90868 0.99669 0.86910 1.91529 1.83484 1.81187 1.55300 1.20974 1.00936 0.98467 0.93330 1.19459 0.91201 1.03079 0.98040 1.25215 1.12240 0.95493 0.86103 1.86693 1.33935 1.70993 1.42442 0.84520 0.72216 0.80810 0.79474 1.17459 1.17628 1.17012 1.21147 0.98751 0.93525 0.98932 1.21088 0.97416 0.99805 0.92624 0.91176 0.90979 0.91163 0.91009 0.90911 0.91178 0.91162 0.90916 0.90996 0.85838 0.86060 0.90816 0.90765 0.84109 0.83991 0.83860 0.90109 0.78229 0.86132 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.92 8.65 101.05 0.87 1.79 16 2 Si 1.06 -3.22 12.32 -169.99 -2.09 -5.32 16 3 C -0.45 0.99 8.53 101.05 0.86 1.85 16 4 C -0.45 0.99 8.53 101.05 0.86 1.85 16 5 C -0.36 0.34 4.59 -39.58 -0.18 0.16 16 6 C -0.09 0.05 9.29 -39.58 -0.37 -0.31 16 7 C -0.11 0.02 9.70 -39.58 -0.38 -0.36 16 8 C -0.09 0.01 5.51 -104.63 -0.58 -0.57 16 9 C 0.10 -0.13 4.86 36.00 0.18 0.05 16 10 O -0.30 -0.15 9.02 -19.55 -0.18 -0.32 16 11 C 0.13 0.12 6.62 -39.24 -0.26 -0.14 16 12 C -0.18 0.05 9.04 -39.44 -0.36 -0.31 16 13 C -0.11 -0.04 10.02 -39.53 -0.40 -0.44 16 14 C 0.07 0.15 7.30 -39.42 -0.29 -0.14 16 15 F -0.14 -0.44 17.27 2.25 0.04 -0.41 16 16 C -0.12 -0.23 8.63 -39.53 -0.34 -0.57 16 17 C -0.12 -0.19 5.28 -104.48 -0.55 -0.74 16 18 C -0.08 -0.11 2.33 36.01 0.08 -0.02 16 19 O -0.54 -1.16 12.65 -35.23 -0.45 -1.61 16 20 Si 1.01 1.04 25.75 -169.99 -4.38 -3.34 16 21 H -0.25 -0.41 6.73 56.52 0.38 -0.03 16 22 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 23 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 24 C -0.11 0.01 9.70 -39.58 -0.38 -0.38 16 25 C -0.09 0.05 9.29 -39.58 -0.37 -0.32 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 32 H 0.07 -0.17 7.69 -51.93 -0.40 -0.57 16 33 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.12 -0.29 7.43 -52.49 -0.39 -0.68 16 36 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 37 H 0.07 -0.18 7.60 -51.93 -0.39 -0.57 16 38 H 0.07 -0.19 7.61 -51.93 -0.40 -0.58 16 39 H 0.14 -0.36 6.30 -52.49 -0.33 -0.69 16 40 H 0.14 -0.21 8.06 -52.48 -0.42 -0.63 16 41 H 0.14 0.16 4.89 -52.49 -0.26 -0.10 16 42 H 0.08 0.04 7.83 -51.93 -0.41 -0.37 16 43 H 0.37 0.06 8.60 45.56 0.39 0.45 16 44 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 45 H 0.12 -0.28 7.43 -52.49 -0.39 -0.67 16 LS Contribution 378.81 15.07 5.71 5.71 Total: 0.00 -4.93 378.81 -8.89 -13.82 By element: Atomic # 1 Polarization: -3.98 SS G_CDS: -5.95 Total: -9.93 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -1.60 Total: 1.39 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -0.62 Total: -1.93 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: -6.47 Total: -8.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -4.93 -8.89 -13.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.386 kcal (2) G-P(sol) polarization free energy of solvation -4.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds