Wall clock time and date at job start Mon Mar 8 2021 13:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35939 * 117.00355 * 180.02562 * 10 9 8 12 12 C 1.38682 * 120.02773 * 359.72111 * 11 10 9 13 13 C 1.38179 * 119.96891 * 179.74883 * 12 11 10 14 14 C 1.38428 * 120.02906 * 0.52792 * 13 12 11 15 15 F 1.35105 * 119.97205 * 179.76758 * 14 13 12 16 16 C 1.38479 * 120.05852 * 359.74948 * 14 13 12 17 17 C 1.38123 * 120.03223 * 359.97438 * 16 14 13 18 18 C 1.50700 * 120.01715 * 179.97438 * 17 16 14 19 19 O 1.42907 * 109.47004 * 105.02010 * 18 17 16 20 20 Si 1.86304 * 109.46958 * 345.02252 * 18 17 16 21 21 H 1.48498 * 109.47199 * 59.99693 * 20 18 17 22 22 H 1.48501 * 109.47121 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46949 * 299.99472 * 20 18 17 24 24 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 25 25 C 1.38234 * 120.00005 * 0.52168 * 24 8 7 26 26 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 27 27 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 31 31 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 32 32 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 33 33 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 34 34 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 35 35 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 36 36 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 38 38 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 39 39 H 1.08000 * 120.01711 * 0.02562 * 12 11 10 40 40 H 1.08003 * 119.98750 * 180.28002 * 13 12 11 41 41 H 1.08001 * 119.98495 * 179.97438 * 16 14 13 42 42 H 1.08995 * 109.47044 * 225.02022 * 18 17 16 43 43 H 0.96695 * 113.99701 * 60.00114 * 19 18 17 44 44 H 1.07999 * 119.99927 * 180.24100 * 24 8 7 45 45 H 1.08001 * 120.00310 * 179.72165 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9376 -3.5044 6.0753 12 6 5.1776 -4.0820 7.0813 13 6 5.8005 -4.7034 8.1467 14 6 7.1826 -4.7399 8.2157 15 9 7.7905 -5.3437 9.2604 16 6 7.9427 -4.1585 7.2148 17 6 7.3226 -3.5417 6.1458 18 6 8.1501 -2.9086 5.0570 19 8 8.1236 -3.7393 3.8945 20 14 9.9078 -2.7181 5.6442 21 1 10.4659 -4.0533 5.9772 22 1 10.7234 -2.0948 4.5711 23 1 9.9353 -1.8548 6.8521 24 6 3.1758 -0.8216 3.8171 25 6 2.7155 -0.1698 2.6883 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.5739 1.7565 -0.0005 30 1 2.1206 2.2703 -0.8899 31 1 2.1206 2.2703 0.8901 32 1 2.1206 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4112 34 1 3.5740 -0.8778 -1.5214 35 1 2.5356 -2.7987 0.5825 36 1 3.3559 -3.9596 2.5930 37 1 3.5293 -2.3833 5.9053 38 1 3.5332 -3.9242 5.0141 39 1 4.0993 -4.0501 7.0297 40 1 5.2089 -5.1572 8.9280 41 1 9.0209 -4.1873 7.2700 42 1 7.7404 -1.9286 4.8126 43 1 7.2381 -3.8822 3.5333 44 1 3.3550 -0.2663 4.7259 45 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12398896_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:17:14 Heat of formation + Delta-G solvation = -103.485360 kcal Electronic energy + Delta-G solvation = -25699.873791 eV Core-core repulsion = 21913.582069 eV Total energy + Delta-G solvation = -3786.291722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93798 -41.58162 -40.03336 -38.47639 -37.46979 -33.25119 -32.80162 -31.85310 -30.55189 -29.42732 -28.29092 -28.26829 -27.39688 -26.92180 -23.85694 -23.46166 -22.84032 -21.91443 -19.48058 -18.68413 -18.41615 -17.75990 -17.34711 -17.12879 -16.60284 -16.33624 -15.95944 -15.76438 -15.59797 -15.47297 -15.15993 -14.59552 -14.31099 -14.18565 -14.13299 -14.01891 -13.93074 -13.73148 -13.60877 -13.36330 -13.27441 -13.13336 -13.11070 -12.96446 -12.85922 -12.43319 -12.30042 -12.09535 -11.91569 -11.75183 -11.29050 -11.13064 -10.91573 -10.75736 -10.75480 -10.26220 -9.77742 -9.67207 -9.23059 -0.08210 0.03188 0.17228 0.55076 1.13038 1.44173 1.46772 1.84765 1.89386 1.95689 2.02618 2.24692 2.33923 2.67424 3.02734 3.12372 3.41825 3.53688 3.76403 3.82950 3.85983 3.96399 4.01703 4.13760 4.20037 4.27187 4.37014 4.52062 4.56138 4.61445 4.74123 4.84837 4.84993 4.88811 4.89650 4.89961 4.90778 4.94274 4.97982 5.03155 5.05852 5.18763 5.42682 5.52345 5.58852 5.59629 5.62381 5.68133 5.71578 6.14316 6.19494 6.57877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.125 2.875 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.105 4.105 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.097 3.903 10 O -0.312 6.312 11 C 0.133 3.867 12 C -0.173 4.173 13 C -0.104 4.104 14 C 0.048 3.952 15 F -0.148 7.148 16 C -0.130 4.130 17 C -0.129 4.129 18 C -0.083 4.083 19 O -0.548 6.548 20 Si 1.028 2.972 21 H -0.263 1.263 22 H -0.267 1.267 23 H -0.240 1.240 24 C -0.121 4.121 25 C -0.105 4.105 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.088 0.912 43 H 0.377 0.623 44 H 0.128 0.872 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 2.065 -1.542 5.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.123 4.123 7 C -0.136 4.136 8 C -0.102 4.102 9 C 0.023 3.977 10 O -0.226 6.226 11 C 0.087 3.913 12 C -0.191 4.191 13 C -0.123 4.123 14 C 0.029 3.971 15 F -0.127 7.127 16 C -0.148 4.148 17 C -0.130 4.130 18 C -0.191 4.191 19 O -0.355 6.355 20 Si 0.848 3.152 21 H -0.188 1.188 22 H -0.191 1.191 23 H -0.163 1.163 24 C -0.139 4.139 25 C -0.123 4.123 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.185 0.815 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.106 0.894 43 H 0.226 0.774 44 H 0.146 0.854 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.664 2.193 -1.223 4.442 hybrid contribution -1.020 -0.465 0.353 1.175 sum -4.684 1.728 -0.870 5.068 Atomic orbital electron populations 1.26281 1.21533 1.04491 1.04558 0.77178 0.65213 0.64558 0.61788 1.26296 1.06362 1.19551 1.04830 1.26294 1.06368 1.08527 1.15835 1.27962 1.02479 0.99700 1.11027 1.21384 0.97401 0.95120 0.98348 1.21386 0.98940 1.00582 0.92738 1.19587 1.01484 0.94326 0.94800 1.21847 0.77368 1.01537 0.96957 1.86135 1.22346 1.72610 1.41521 1.18842 0.91174 0.93305 0.88002 1.21421 1.01827 1.01665 0.94231 1.21271 0.92093 0.99144 0.99791 1.17700 0.91767 1.00634 0.86980 1.91494 1.83816 1.81536 1.55820 1.21056 1.01161 0.98907 0.93700 1.19499 0.91832 1.03616 0.98061 1.25221 1.12285 0.95682 0.85879 1.86664 1.34754 1.71259 1.42841 0.84292 0.71838 0.79962 0.79070 1.18787 1.19132 1.16308 1.21384 0.99062 0.93883 0.99534 1.21375 0.97469 1.00692 0.92767 0.91357 0.90766 0.91335 0.91405 0.90754 0.90904 0.90875 0.90765 0.91395 0.84487 0.85132 0.89524 0.89348 0.81535 0.82074 0.83870 0.89408 0.77387 0.85391 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.07 8.65 113.37 0.98 3.05 16 2 Si 1.13 -7.29 12.32 68.60 0.85 -6.45 16 3 C -0.46 2.18 8.53 113.37 0.97 3.14 16 4 C -0.46 2.18 8.53 113.37 0.97 3.15 16 5 C -0.37 0.78 4.59 22.27 0.10 0.88 16 6 C -0.10 0.14 9.29 22.27 0.21 0.35 16 7 C -0.12 0.08 9.70 22.27 0.22 0.29 16 8 C -0.10 0.05 5.51 -19.87 -0.11 -0.06 16 9 C 0.10 -0.34 4.86 71.23 0.35 0.01 16 10 O -0.31 -0.14 9.02 -92.86 -0.84 -0.97 16 11 C 0.13 0.17 6.62 22.49 0.15 0.32 16 12 C -0.17 0.30 9.04 22.36 0.20 0.50 16 13 C -0.10 -0.01 10.02 22.30 0.22 0.21 16 14 C 0.05 0.23 7.30 22.37 0.16 0.39 16 15 F -0.15 -1.09 17.27 44.97 0.78 -0.32 16 16 C -0.13 -0.62 8.63 22.30 0.19 -0.42 16 17 C -0.13 -0.47 5.28 -19.77 -0.10 -0.57 16 18 C -0.08 -0.26 2.33 71.24 0.17 -0.10 16 19 O -0.55 -2.75 12.65 -148.98 -1.89 -4.64 16 20 Si 1.03 3.13 25.75 68.60 1.77 4.90 16 21 H -0.26 -1.27 6.73 99.48 0.67 -0.60 16 22 H -0.27 -1.36 7.11 99.48 0.71 -0.65 16 23 H -0.24 -0.41 7.11 99.48 0.71 0.30 16 24 C -0.12 0.03 9.70 22.27 0.22 0.24 16 25 C -0.11 0.12 9.29 22.27 0.21 0.32 16 26 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.38 7.69 -2.38 -0.02 -0.40 16 32 H 0.07 -0.38 7.69 -2.39 -0.02 -0.40 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.14 -0.69 7.43 -2.91 -0.02 -0.71 16 36 H 0.13 -0.46 8.06 -2.91 -0.02 -0.48 16 37 H 0.09 -0.54 7.60 -2.39 -0.02 -0.56 16 38 H 0.09 -0.57 7.61 -2.39 -0.02 -0.59 16 39 H 0.17 -1.24 6.30 -2.91 -0.02 -1.26 16 40 H 0.16 -0.70 8.06 -2.91 -0.02 -0.72 16 41 H 0.14 0.52 4.89 -2.91 -0.01 0.51 16 42 H 0.09 0.12 7.83 -2.39 -0.02 0.10 16 43 H 0.38 0.33 8.60 -74.06 -0.64 -0.31 16 44 H 0.13 -0.35 8.06 -2.91 -0.02 -0.37 16 45 H 0.14 -0.65 7.43 -2.91 -0.02 -0.68 16 Total: 0.00 -11.66 378.81 6.83 -4.83 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: 1.08 Total: -9.07 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.09 Total: 11.72 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: -2.72 Total: -5.61 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.78 Total: -0.32 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.61 Total: -1.55 kcal Total: -11.66 6.83 -4.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12398896_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.654 kcal (2) G-P(sol) polarization free energy of solvation -11.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds