Wall clock time and date at job start Mon Mar 8 2021 12:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38240 * 119.97039 * 2 1 4 4 C 1.38292 * 120.11108 * 179.76755 * 3 2 1 5 5 C 1.38120 * 120.05160 * 0.50939 * 4 3 2 6 6 C 1.50705 * 120.02927 * 179.76903 * 5 4 3 7 7 O 1.42901 * 109.46962 * 254.72298 * 6 5 4 8 8 Si 1.86296 * 109.46838 * 14.71932 * 6 5 4 9 9 H 1.48503 * 109.47150 * 60.00230 * 8 6 5 10 10 H 1.48500 * 109.47120 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47679 * 300.00414 * 8 6 5 12 12 C 1.38753 * 119.94644 * 359.49152 * 5 4 3 13 13 O 1.35908 * 120.05873 * 180.27493 * 12 5 4 14 14 C 1.42900 * 117.00074 * 173.82512 * 13 12 5 15 15 Si 1.86300 * 109.46977 * 282.05825 * 14 13 12 16 16 C 1.86301 * 109.47293 * 66.58425 * 15 14 13 17 17 C 1.86304 * 109.46732 * 186.58478 * 15 14 13 18 18 C 1.86303 * 109.47250 * 306.57975 * 15 14 13 19 19 C 1.38164 * 119.96917 * 180.02562 * 2 1 3 20 20 H 1.09003 * 109.46720 * 269.97965 * 1 2 3 21 21 H 1.09002 * 109.47135 * 29.97665 * 1 2 3 22 22 H 1.08998 * 109.47296 * 149.98212 * 1 2 3 23 23 H 1.07997 * 119.94604 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.97745 * 180.27845 * 4 3 2 25 25 H 1.08991 * 109.47348 * 134.72532 * 6 5 4 26 26 H 0.96702 * 113.99843 * 60.00008 * 7 6 5 27 27 H 1.08997 * 109.46959 * 42.05367 * 14 13 12 28 28 H 1.08992 * 109.46831 * 162.05368 * 14 13 12 29 29 H 1.08996 * 109.47063 * 55.57242 * 16 15 14 30 30 H 1.09001 * 109.46889 * 175.57001 * 16 15 14 31 31 H 1.08999 * 109.47120 * 295.56880 * 16 15 14 32 32 H 1.08997 * 109.47181 * 60.00169 * 17 15 14 33 33 H 1.09005 * 109.46937 * 179.97438 * 17 15 14 34 34 H 1.09004 * 109.47093 * 299.99403 * 17 15 14 35 35 H 1.09007 * 109.46555 * 65.00685 * 18 15 14 36 36 H 1.08998 * 109.47121 * 185.00268 * 18 15 14 37 37 H 1.08998 * 109.47172 * 305.00741 * 18 15 14 38 38 H 1.08000 * 120.03125 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1976 1.1975 0.0000 4 6 3.5806 1.2009 0.0049 5 6 4.2752 0.0071 -0.0009 6 6 5.7822 0.0115 -0.0009 7 8 6.2596 -0.3359 -1.3023 8 14 6.3983 1.7099 0.4536 9 1 5.9022 2.0709 1.8060 10 1 7.8833 1.7140 0.4543 11 1 5.9004 2.6985 -0.5363 12 6 3.5844 -1.1962 -0.0009 13 8 4.2656 -2.3722 -0.0009 14 6 3.4954 -3.5681 0.1360 15 14 3.0135 -3.7953 1.9212 16 6 1.8371 -2.4410 2.4241 17 6 2.1838 -5.4497 2.1346 18 6 4.5377 -3.7225 2.9901 19 6 2.1972 -1.1969 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6563 2.1320 0.0004 24 1 4.1179 2.1378 0.0094 25 1 6.1477 -0.7141 0.7257 26 1 5.9725 0.2682 -2.0007 27 1 2.5968 -3.4936 -0.4762 28 1 4.0886 -4.4217 -0.1917 29 1 0.9815 -2.4337 1.7488 30 1 1.4939 -2.6179 3.4434 31 1 2.3476 -1.4793 2.3743 32 1 2.8721 -6.2420 1.8405 33 1 1.9022 -5.5828 3.1792 34 1 1.2920 -5.4922 1.5093 35 1 4.9735 -2.7250 2.9338 36 1 4.2681 -3.9435 4.0228 37 1 5.2631 -4.4564 2.6389 38 1 1.6572 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12861320_3095236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:51:47 Heat of formation + Delta-G solvation = -75.732179 kcal Electronic energy + Delta-G solvation = -17804.607167 eV Core-core repulsion = 15157.415069 eV Total energy + Delta-G solvation = -2647.192097 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.125 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41756 -38.61815 -37.66845 -33.92161 -31.24307 -29.75058 -29.20302 -28.39299 -28.26470 -27.66620 -25.14981 -23.16957 -22.00635 -18.87592 -18.02723 -17.12978 -16.89005 -16.54333 -15.85842 -15.62660 -15.17773 -14.81693 -14.56445 -14.33368 -14.06476 -13.90717 -13.83224 -13.49947 -13.35384 -13.26202 -13.11409 -13.04031 -13.01964 -12.54416 -12.44419 -12.33508 -12.12986 -11.74952 -11.57403 -10.85863 -10.79146 -10.63075 -10.32167 -9.68655 -8.92525 0.24484 0.46160 1.16940 1.41405 1.51363 1.57823 1.80311 1.86043 1.89290 2.53673 2.56988 2.70609 3.57549 3.75961 3.88078 4.00812 4.14056 4.33684 4.36969 4.52867 4.63551 4.70731 4.75655 4.77338 4.79245 4.80658 4.81788 4.82727 4.84379 4.88878 4.93782 5.24239 5.33884 5.37645 5.51529 5.59544 5.62215 5.64621 5.84108 6.48712 6.74314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 C -0.163 4.163 4 C -0.095 4.095 5 C -0.179 4.179 6 C -0.074 4.074 7 O -0.553 6.553 8 Si 0.983 3.017 9 H -0.255 1.255 10 H -0.275 1.275 11 H -0.242 1.242 12 C 0.137 3.863 13 O -0.300 6.300 14 C -0.267 4.267 15 Si 1.049 2.951 16 C -0.457 4.457 17 C -0.453 4.453 18 C -0.462 4.462 19 C -0.211 4.211 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.107 0.893 26 H 0.384 0.616 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -0.064 0.766 4.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.113 4.113 5 C -0.180 4.180 6 C -0.183 4.183 7 O -0.360 6.360 8 Si 0.806 3.194 9 H -0.179 1.179 10 H -0.201 1.201 11 H -0.165 1.165 12 C 0.091 3.909 13 O -0.213 6.213 14 C -0.386 4.386 15 Si 1.241 2.759 16 C -0.564 4.564 17 C -0.561 4.561 18 C -0.569 4.569 19 C -0.229 4.229 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.093 0.907 23 H 0.160 0.840 24 H 0.156 0.844 25 H 0.125 0.875 26 H 0.232 0.768 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.303 0.231 1.250 3.540 hybrid contribution -0.336 -0.172 -0.474 0.606 sum -3.639 0.059 0.776 3.722 Atomic orbital electron populations 1.20915 0.89425 1.03861 1.03381 1.20023 0.97236 0.92239 0.95278 1.21160 0.93709 0.98677 1.04606 1.21107 0.95198 0.96704 0.98246 1.19738 0.96587 0.91417 1.10227 1.24924 0.91455 1.13079 0.88877 1.86509 1.75524 1.57041 1.16877 0.85262 0.78801 0.74448 0.80844 1.17927 1.20068 1.16549 1.18967 0.90753 0.86074 0.95107 1.86083 1.35588 1.12319 1.87315 1.28564 1.01167 0.87004 1.21826 0.78939 0.66155 0.67400 0.63399 1.26546 1.11071 1.12618 1.06212 1.26105 1.08037 1.16555 1.05407 1.26253 1.16178 1.04146 1.10297 1.21445 0.92605 1.00088 1.08774 0.89983 0.90416 0.90663 0.84038 0.84367 0.87530 0.76752 0.90298 0.86868 0.90153 0.90778 0.92017 0.90787 0.90557 0.90360 0.92118 0.90832 0.91233 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.45 10.01 71.24 0.71 1.16 16 2 C -0.05 -0.04 5.88 -19.88 -0.12 -0.16 16 3 C -0.16 -0.19 9.70 22.28 0.22 0.03 16 4 C -0.09 -0.23 8.66 22.25 0.19 -0.04 16 5 C -0.18 -0.88 5.27 -19.77 -0.10 -0.99 16 6 C -0.07 -0.32 2.38 71.24 0.17 -0.15 16 7 O -0.55 -3.30 12.88 -148.98 -1.92 -5.22 16 8 Si 0.98 1.51 25.48 68.60 1.75 3.26 16 9 H -0.26 -0.60 7.11 99.48 0.71 0.11 16 10 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 11 H -0.24 0.09 6.74 99.48 0.67 0.76 16 12 C 0.14 0.74 5.77 22.51 0.13 0.87 16 13 O -0.30 -1.83 9.13 -92.52 -0.84 -2.67 16 14 C -0.27 0.17 5.31 113.37 0.60 0.77 16 15 Si 1.05 -4.42 11.68 68.60 0.80 -3.62 16 16 C -0.46 1.16 7.04 113.37 0.80 1.96 16 17 C -0.45 2.18 8.65 113.37 0.98 3.17 16 18 C -0.46 0.06 8.65 113.37 0.98 1.04 16 19 C -0.21 -0.42 5.29 22.37 0.12 -0.30 16 20 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 21 H 0.08 -0.39 8.08 -2.39 -0.02 -0.41 16 22 H 0.07 -0.38 8.08 -2.39 -0.02 -0.40 16 23 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 24 H 0.14 -0.12 4.89 -2.91 -0.01 -0.14 16 25 H 0.11 0.55 7.83 -2.39 -0.02 0.53 16 26 H 0.38 -0.41 8.70 -74.06 -0.64 -1.06 16 27 H 0.08 -0.22 6.06 -2.39 -0.01 -0.23 16 28 H 0.11 -0.27 7.96 -2.39 -0.02 -0.28 16 29 H 0.08 -0.35 6.51 -2.39 -0.02 -0.36 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.06 0.05 6.55 -2.39 -0.02 0.04 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 34 H 0.08 -0.46 7.96 -2.38 -0.02 -0.48 16 35 H 0.06 0.14 7.96 -2.38 -0.02 0.12 16 36 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 37 H 0.07 0.00 7.96 -2.39 -0.02 -0.02 16 38 H 0.15 -0.30 4.25 -2.91 -0.01 -0.32 16 Total: 0.00 -11.20 303.57 5.58 -5.62 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.12 Total: -4.73 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.68 Total: 7.36 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -2.76 Total: -7.89 kcal Atomic # 14 Polarization: -2.91 SS G_CDS: 2.55 Total: -0.36 kcal Total: -11.20 5.58 -5.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12861320_3095236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.109 kcal (2) G-P(sol) polarization free energy of solvation -11.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds