Wall clock time and date at job start Mon Mar 8 2021 14:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38249 * 119.97072 * 2 1 4 4 C 1.38295 * 120.10804 * 179.77012 * 3 2 1 5 5 C 1.38122 * 120.05713 * 0.51162 * 4 3 2 6 6 C 1.50697 * 120.02866 * 179.77110 * 5 4 3 7 7 O 1.42906 * 109.46831 * 254.72078 * 6 5 4 8 8 Si 1.86300 * 109.47007 * 14.71467 * 6 5 4 9 9 H 1.48503 * 109.46942 * 60.00611 * 8 6 5 10 10 H 1.48503 * 109.47276 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47372 * 300.00074 * 8 6 5 12 12 C 1.38752 * 119.94222 * 359.48467 * 5 4 3 13 13 O 1.35897 * 120.05582 * 180.27839 * 12 5 4 14 14 C 1.42898 * 117.00351 * 180.02562 * 13 12 5 15 15 C 1.50697 * 109.47339 * 180.02562 * 14 13 12 16 16 C 1.38234 * 119.99966 * 269.72756 * 15 14 13 17 17 C 1.38237 * 120.00065 * 179.76333 * 16 15 14 18 18 C 1.38237 * 119.99613 * 0.51414 * 17 16 15 19 19 Si 1.86804 * 119.99702 * 179.72203 * 18 17 16 20 20 C 1.86294 * 109.47305 * 270.01631 * 19 18 17 21 21 C 1.86303 * 109.47074 * 30.01969 * 19 18 17 22 22 C 1.86307 * 109.46984 * 150.01747 * 19 18 17 23 23 C 1.38227 * 120.00352 * 359.73604 * 18 17 16 24 24 C 1.38233 * 119.99912 * 0.02562 * 23 18 17 25 25 C 1.38162 * 119.97608 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46794 * 269.98060 * 1 2 3 27 27 H 1.09001 * 109.47466 * 29.97477 * 1 2 3 28 28 H 1.09000 * 109.47279 * 149.97897 * 1 2 3 29 29 H 1.07999 * 119.94520 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.96792 * 180.26670 * 4 3 2 31 31 H 1.09000 * 109.47374 * 134.71651 * 6 5 4 32 32 H 0.96698 * 113.99401 * 299.99518 * 7 6 5 33 33 H 1.08998 * 109.47144 * 300.00281 * 14 13 12 34 34 H 1.09001 * 109.46857 * 60.00285 * 14 13 12 35 35 H 1.08001 * 120.00319 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.00449 * 180.22941 * 17 16 15 37 37 H 1.09004 * 109.47235 * 60.00142 * 20 19 18 38 38 H 1.08996 * 109.47405 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47338 * 300.00304 * 20 19 18 40 40 H 1.09002 * 109.47386 * 60.00371 * 21 19 18 41 41 H 1.09002 * 109.46436 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.47144 * 299.99281 * 21 19 18 43 43 H 1.09000 * 109.46929 * 60.00142 * 22 19 18 44 44 H 1.08996 * 109.46926 * 179.97438 * 22 19 18 45 45 H 1.09001 * 109.47117 * 299.99992 * 22 19 18 46 46 H 1.08002 * 120.00405 * 179.97438 * 23 18 17 47 47 H 1.08002 * 120.00461 * 179.97438 * 24 23 18 48 48 H 1.08005 * 120.02532 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1976 0.0000 4 6 3.5805 1.2009 0.0048 5 6 4.2752 0.0072 -0.0011 6 6 5.7822 0.0116 -0.0010 7 8 6.2595 -0.3357 -1.3025 8 14 6.3982 1.7100 0.4535 9 1 5.9022 2.0709 1.8059 10 1 7.8832 1.7146 0.4529 11 1 5.9003 2.6985 -0.5365 12 6 3.5844 -1.1961 -0.0010 13 8 4.2656 -2.3721 -0.0010 14 6 3.4891 -3.5717 -0.0015 15 6 4.4088 -4.7654 -0.0008 16 6 4.8269 -5.3165 -1.1977 17 6 5.6746 -6.4085 -1.1971 18 6 6.0955 -6.9560 0.0004 19 14 7.2347 -8.4365 0.0011 20 6 6.2214 -9.9998 0.0005 21 6 8.3105 -8.3930 -1.5193 22 6 8.3084 -8.3930 1.5230 23 6 5.6733 -6.4082 1.1972 24 6 4.8297 -5.3132 1.1966 25 6 2.1973 -1.1968 -0.0005 26 1 -0.3633 -0.0003 1.0278 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6562 2.1321 0.0004 30 1 4.1177 2.1378 0.0091 31 1 6.1477 -0.7140 0.7256 32 1 5.9767 -1.2096 -1.6048 33 1 2.8600 -3.5977 0.8883 34 1 2.8606 -3.5973 -0.8917 35 1 4.4942 -4.8917 -2.1332 36 1 6.0042 -6.8368 -2.1322 37 1 5.5932 -10.0252 -0.8900 38 1 6.8861 -10.8636 0.0004 39 1 5.5920 -10.0252 0.8900 40 1 8.9035 -7.4784 -1.5189 41 1 8.9755 -9.2567 -1.5185 42 1 7.6823 -8.4185 -2.4097 43 1 7.6790 -8.4185 2.4126 44 1 8.9728 -9.2571 1.5237 45 1 8.9013 -7.4784 1.5234 46 1 6.0019 -6.8362 2.1327 47 1 4.4994 -4.8854 2.1317 48 1 1.6573 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_12861320_9276060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:34:23 Heat of formation + Delta-G solvation = -77.452906 kcal Electronic energy + Delta-G solvation = -25411.204479 eV Core-core repulsion = 21939.957966 eV Total energy + Delta-G solvation = -3471.246514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51470 -40.10947 -38.55565 -37.49809 -33.99059 -33.00800 -31.92162 -30.88039 -29.60619 -29.21132 -28.46546 -28.44026 -27.42964 -25.11574 -23.64728 -23.52112 -22.24979 -21.75856 -18.88862 -18.09054 -17.93469 -17.12346 -17.05823 -16.64831 -16.15562 -15.66208 -15.60820 -15.31131 -14.81298 -14.70576 -14.59033 -14.39498 -14.26036 -14.20942 -14.14380 -13.91026 -13.87929 -13.55250 -13.29813 -13.28589 -13.14862 -13.12613 -13.03567 -12.84480 -12.54946 -12.39854 -12.18806 -12.05282 -11.77283 -11.65071 -11.11202 -11.03621 -10.92953 -10.88317 -10.85115 -9.81856 -9.77087 -9.72719 -9.11542 0.13026 0.24430 0.43758 0.50996 1.32043 1.59873 1.64679 1.67147 1.82145 1.85715 2.07384 2.24052 2.51654 2.67944 2.99549 3.59321 3.69274 3.74935 3.83486 3.93949 3.99935 4.08147 4.13080 4.18195 4.28044 4.31161 4.46775 4.48827 4.59593 4.64028 4.64209 4.67829 4.69153 4.69893 4.72807 4.73597 4.74035 4.74389 4.84260 4.96182 5.11465 5.12026 5.25935 5.36971 5.39312 5.43358 5.47830 5.51164 5.58138 5.59087 5.59249 5.76371 6.07217 6.36318 6.71713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.151 4.151 6 C -0.082 4.082 7 O -0.539 6.539 8 Si 1.016 2.984 9 H -0.249 1.249 10 H -0.257 1.257 11 H -0.252 1.252 12 C 0.146 3.854 13 O -0.308 6.308 14 C 0.102 3.898 15 C -0.089 4.089 16 C -0.106 4.106 17 C -0.091 4.091 18 C -0.360 4.360 19 Si 1.059 2.941 20 C -0.449 4.449 21 C -0.450 4.450 22 C -0.450 4.450 23 C -0.091 4.091 24 C -0.106 4.106 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.368 0.632 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 -2.521 0.945 3.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 C -0.169 4.169 4 C -0.098 4.098 5 C -0.152 4.152 6 C -0.190 4.190 7 O -0.344 6.344 8 Si 0.836 3.164 9 H -0.173 1.173 10 H -0.181 1.181 11 H -0.176 1.176 12 C 0.100 3.900 13 O -0.222 6.222 14 C 0.027 3.973 15 C -0.089 4.089 16 C -0.124 4.124 17 C -0.109 4.109 18 C -0.402 4.402 19 Si 1.251 2.749 20 C -0.557 4.557 21 C -0.558 4.558 22 C -0.558 4.558 23 C -0.109 4.109 24 C -0.124 4.124 25 C -0.227 4.227 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.092 0.908 32 H 0.216 0.784 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.283 -1.124 1.205 2.088 hybrid contribution -0.978 -1.077 -0.166 1.464 sum -2.261 -2.200 1.039 3.322 Atomic orbital electron populations 1.20857 0.90669 1.03214 1.02777 1.19773 0.96234 0.92404 0.95813 1.20942 0.93718 0.97887 1.04321 1.20954 0.94657 0.96750 0.97448 1.19606 0.96549 0.90838 1.08182 1.25188 0.91501 1.13611 0.88710 1.86667 1.75985 1.39805 1.31938 0.84453 0.79823 0.72700 0.79415 1.17288 1.18097 1.17645 1.18735 0.90289 0.85274 0.95690 1.86115 1.35738 1.11897 1.88413 1.21635 0.92509 0.80867 1.02295 1.19439 0.99727 0.95704 0.94063 1.21144 0.97530 0.96569 0.97173 1.21085 0.96202 0.95359 0.98238 1.27481 1.07189 1.11346 0.94171 0.78195 0.65366 0.63960 0.67394 1.26123 1.09323 1.15596 1.04612 1.26135 1.09895 1.04738 1.14987 1.26136 1.09883 1.04724 1.15017 1.21078 0.96248 0.95338 0.98251 1.21144 0.97559 0.96533 0.97196 1.21136 0.92670 0.99103 1.09753 0.90654 0.91003 0.91352 0.85391 0.85173 0.90754 0.78413 0.91046 0.90986 0.86105 0.85862 0.91167 0.90991 0.91174 0.90997 0.90925 0.91163 0.91185 0.90921 0.91008 0.85894 0.86181 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.01 36.00 0.36 0.49 16 2 C -0.04 -0.05 5.88 -104.65 -0.62 -0.66 16 3 C -0.15 -0.20 9.70 -39.56 -0.38 -0.58 16 4 C -0.08 -0.17 8.66 -39.60 -0.34 -0.51 16 5 C -0.15 -0.41 5.28 -104.48 -0.55 -0.97 16 6 C -0.08 -0.20 2.33 36.00 0.08 -0.11 16 7 O -0.54 -1.80 12.65 -35.23 -0.45 -2.25 16 8 Si 1.02 1.70 25.74 -169.99 -4.37 -2.68 16 9 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 10 H -0.26 -0.68 7.11 56.52 0.40 -0.28 16 11 H -0.25 -0.51 6.74 56.52 0.38 -0.13 16 12 C 0.15 0.35 6.62 -39.22 -0.26 0.09 16 13 O -0.31 -0.61 9.03 -19.42 -0.18 -0.79 16 14 C 0.10 0.01 4.87 36.00 0.18 0.18 16 15 C -0.09 -0.08 5.51 -104.62 -0.58 -0.66 16 16 C -0.11 -0.06 9.70 -39.58 -0.38 -0.45 16 17 C -0.09 -0.01 9.29 -39.58 -0.37 -0.37 16 18 C -0.36 0.13 4.59 -39.59 -0.18 -0.05 16 19 Si 1.06 -2.77 12.32 -169.99 -2.09 -4.86 16 20 C -0.45 0.76 8.65 101.05 0.87 1.63 16 21 C -0.45 0.82 8.53 101.05 0.86 1.68 16 22 C -0.45 0.82 8.53 101.05 0.86 1.68 16 23 C -0.09 -0.01 9.29 -39.59 -0.37 -0.38 16 24 C -0.11 -0.08 9.70 -39.58 -0.38 -0.47 16 25 C -0.21 -0.27 8.69 -39.43 -0.34 -0.62 16 26 H 0.07 -0.13 8.14 -51.92 -0.42 -0.55 16 27 H 0.07 -0.12 8.08 -51.93 -0.42 -0.54 16 28 H 0.07 -0.12 8.08 -51.93 -0.42 -0.54 16 29 H 0.13 -0.08 8.06 -52.49 -0.42 -0.50 16 30 H 0.13 0.11 4.89 -52.49 -0.26 -0.15 16 31 H 0.07 0.14 7.83 -51.93 -0.41 -0.27 16 32 H 0.37 0.56 8.61 45.56 0.39 0.95 16 33 H 0.07 -0.06 7.60 -51.93 -0.39 -0.46 16 34 H 0.07 -0.07 7.61 -51.93 -0.39 -0.47 16 35 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 36 H 0.12 -0.22 7.43 -52.48 -0.39 -0.61 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 43 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 45 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 46 H 0.12 -0.21 7.43 -52.49 -0.39 -0.60 16 47 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 48 H 0.13 -0.06 6.30 -52.48 -0.33 -0.39 16 LS Contribution 393.81 15.07 5.93 5.93 Total: 0.00 -4.99 393.81 -9.91 -14.90 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -7.21 Total: -10.18 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.54 Total: -0.07 kcal Atomic # 8 Polarization: -2.41 SS G_CDS: -0.62 Total: -3.03 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -6.47 Total: -7.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -4.99 -9.91 -14.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12861320_9276060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.557 kcal (2) G-P(sol) polarization free energy of solvation -4.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds