Wall clock time and date at job start Mon Mar 8 2021 14:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38249 * 119.97072 * 2 1 4 4 C 1.38295 * 120.10804 * 179.77012 * 3 2 1 5 5 C 1.38122 * 120.05713 * 0.51162 * 4 3 2 6 6 C 1.50697 * 120.02866 * 179.77110 * 5 4 3 7 7 O 1.42906 * 109.46831 * 254.72078 * 6 5 4 8 8 Si 1.86300 * 109.47007 * 14.71467 * 6 5 4 9 9 H 1.48503 * 109.46942 * 60.00611 * 8 6 5 10 10 H 1.48503 * 109.47276 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47372 * 300.00074 * 8 6 5 12 12 C 1.38752 * 119.94222 * 359.48467 * 5 4 3 13 13 O 1.35897 * 120.05582 * 180.27839 * 12 5 4 14 14 C 1.42898 * 117.00351 * 180.02562 * 13 12 5 15 15 C 1.50697 * 109.47339 * 180.02562 * 14 13 12 16 16 C 1.38234 * 119.99966 * 269.72756 * 15 14 13 17 17 C 1.38237 * 120.00065 * 179.76333 * 16 15 14 18 18 C 1.38237 * 119.99613 * 0.51414 * 17 16 15 19 19 Si 1.86804 * 119.99702 * 179.72203 * 18 17 16 20 20 C 1.86294 * 109.47305 * 270.01631 * 19 18 17 21 21 C 1.86303 * 109.47074 * 30.01969 * 19 18 17 22 22 C 1.86307 * 109.46984 * 150.01747 * 19 18 17 23 23 C 1.38227 * 120.00352 * 359.73604 * 18 17 16 24 24 C 1.38233 * 119.99912 * 0.02562 * 23 18 17 25 25 C 1.38162 * 119.97608 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46794 * 269.98060 * 1 2 3 27 27 H 1.09001 * 109.47466 * 29.97477 * 1 2 3 28 28 H 1.09000 * 109.47279 * 149.97897 * 1 2 3 29 29 H 1.07999 * 119.94520 * 0.02562 * 3 2 1 30 30 H 1.07997 * 119.96792 * 180.26670 * 4 3 2 31 31 H 1.09000 * 109.47374 * 134.71651 * 6 5 4 32 32 H 0.96698 * 113.99401 * 299.99518 * 7 6 5 33 33 H 1.08998 * 109.47144 * 300.00281 * 14 13 12 34 34 H 1.09001 * 109.46857 * 60.00285 * 14 13 12 35 35 H 1.08001 * 120.00319 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.00449 * 180.22941 * 17 16 15 37 37 H 1.09004 * 109.47235 * 60.00142 * 20 19 18 38 38 H 1.08996 * 109.47405 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47338 * 300.00304 * 20 19 18 40 40 H 1.09002 * 109.47386 * 60.00371 * 21 19 18 41 41 H 1.09002 * 109.46436 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.47144 * 299.99281 * 21 19 18 43 43 H 1.09000 * 109.46929 * 60.00142 * 22 19 18 44 44 H 1.08996 * 109.46926 * 179.97438 * 22 19 18 45 45 H 1.09001 * 109.47117 * 299.99992 * 22 19 18 46 46 H 1.08002 * 120.00405 * 179.97438 * 23 18 17 47 47 H 1.08002 * 120.00461 * 179.97438 * 24 23 18 48 48 H 1.08005 * 120.02532 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1976 0.0000 4 6 3.5805 1.2009 0.0048 5 6 4.2752 0.0072 -0.0011 6 6 5.7822 0.0116 -0.0010 7 8 6.2595 -0.3357 -1.3025 8 14 6.3982 1.7100 0.4535 9 1 5.9022 2.0709 1.8059 10 1 7.8832 1.7146 0.4529 11 1 5.9003 2.6985 -0.5365 12 6 3.5844 -1.1961 -0.0010 13 8 4.2656 -2.3721 -0.0010 14 6 3.4891 -3.5717 -0.0015 15 6 4.4088 -4.7654 -0.0008 16 6 4.8269 -5.3165 -1.1977 17 6 5.6746 -6.4085 -1.1971 18 6 6.0955 -6.9560 0.0004 19 14 7.2347 -8.4365 0.0011 20 6 6.2214 -9.9998 0.0005 21 6 8.3105 -8.3930 -1.5193 22 6 8.3084 -8.3930 1.5230 23 6 5.6733 -6.4082 1.1972 24 6 4.8297 -5.3132 1.1966 25 6 2.1973 -1.1968 -0.0005 26 1 -0.3633 -0.0003 1.0278 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6562 2.1321 0.0004 30 1 4.1177 2.1378 0.0091 31 1 6.1477 -0.7140 0.7256 32 1 5.9767 -1.2096 -1.6048 33 1 2.8600 -3.5977 0.8883 34 1 2.8606 -3.5973 -0.8917 35 1 4.4942 -4.8917 -2.1332 36 1 6.0042 -6.8368 -2.1322 37 1 5.5932 -10.0252 -0.8900 38 1 6.8861 -10.8636 0.0004 39 1 5.5920 -10.0252 0.8900 40 1 8.9035 -7.4784 -1.5189 41 1 8.9755 -9.2567 -1.5185 42 1 7.6823 -8.4185 -2.4097 43 1 7.6790 -8.4185 2.4126 44 1 8.9728 -9.2571 1.5237 45 1 8.9013 -7.4784 1.5234 46 1 6.0019 -6.8362 2.1327 47 1 4.4994 -4.8854 2.1317 48 1 1.6573 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12861320_9276060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:34:22 Heat of formation + Delta-G solvation = -66.151466 kcal Electronic energy + Delta-G solvation = -25410.714412 eV Core-core repulsion = 21939.957966 eV Total energy + Delta-G solvation = -3470.756446 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58110 -40.09521 -38.60702 -37.67368 -34.04475 -33.00182 -31.88961 -30.94000 -29.45579 -29.23204 -28.30310 -28.27801 -27.42905 -25.19192 -23.70235 -23.49485 -22.28909 -21.78713 -18.98257 -18.23359 -17.95316 -17.16521 -17.08747 -16.74103 -16.17028 -15.71369 -15.64623 -15.39423 -14.89087 -14.70251 -14.55295 -14.34295 -14.33589 -14.07601 -14.04859 -13.82640 -13.74034 -13.48761 -13.15668 -13.13219 -13.09827 -13.03640 -12.97462 -12.83468 -12.56952 -12.41373 -12.27790 -12.06216 -11.82588 -11.75926 -11.21537 -11.05282 -10.92837 -10.78219 -10.76667 -9.84933 -9.81412 -9.69857 -9.20316 0.14367 0.15658 0.34810 0.51368 1.17016 1.45879 1.49073 1.82829 1.91595 1.97458 2.01417 2.27354 2.59367 2.65966 3.00684 3.54493 3.65121 3.78624 3.80547 3.88854 3.98265 4.02489 4.15620 4.21273 4.22731 4.32450 4.41812 4.52279 4.55664 4.70526 4.71342 4.77679 4.83002 4.83925 4.84031 4.87892 4.88524 4.88965 4.89984 4.99264 5.15142 5.16255 5.21279 5.31413 5.39440 5.54317 5.55903 5.58511 5.59102 5.67183 5.70008 5.72471 6.11198 6.30111 6.56472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.158 4.158 4 C -0.093 4.093 5 C -0.169 4.169 6 C -0.087 4.087 7 O -0.552 6.552 8 Si 1.039 2.961 9 H -0.240 1.240 10 H -0.273 1.273 11 H -0.257 1.257 12 C 0.135 3.865 13 O -0.319 6.319 14 C 0.101 3.899 15 C -0.102 4.102 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.373 4.373 19 Si 1.125 2.875 20 C -0.461 4.461 21 C -0.463 4.463 22 C -0.463 4.463 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.214 4.214 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.074 0.926 32 H 0.373 0.627 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.138 0.862 47 H 0.126 0.874 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -2.873 1.048 4.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.177 4.177 4 C -0.111 4.111 5 C -0.170 4.170 6 C -0.195 4.195 7 O -0.358 6.358 8 Si 0.859 3.141 9 H -0.163 1.163 10 H -0.199 1.199 11 H -0.182 1.182 12 C 0.090 3.910 13 O -0.233 6.233 14 C 0.027 3.973 15 C -0.102 4.102 16 C -0.138 4.138 17 C -0.121 4.121 18 C -0.412 4.412 19 Si 1.313 2.687 20 C -0.568 4.568 21 C -0.570 4.570 22 C -0.570 4.570 23 C -0.121 4.121 24 C -0.140 4.140 25 C -0.233 4.233 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.222 0.778 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.156 0.844 47 H 0.144 0.856 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.937 -1.475 1.312 2.766 hybrid contribution -0.786 -0.999 -0.208 1.289 sum -2.723 -2.474 1.104 3.842 Atomic orbital electron populations 1.20900 0.89047 1.03962 1.03452 1.20101 0.97506 0.92200 0.95013 1.21227 0.93584 0.98891 1.03948 1.21149 0.95301 0.96878 0.97733 1.19726 0.96631 0.91417 1.09196 1.25315 0.91776 1.14143 0.88221 1.86633 1.76290 1.40315 1.32571 0.84165 0.78382 0.71958 0.79613 1.16310 1.19855 1.18168 1.18876 0.90836 0.85303 0.96006 1.86096 1.36440 1.12281 1.88468 1.21723 0.92411 0.80036 1.03115 1.19595 1.00223 0.96101 0.94310 1.21370 0.97892 0.97012 0.97512 1.21393 0.96128 0.95356 0.99208 1.28030 1.07260 1.12067 0.93859 0.77192 0.63598 0.61894 0.66056 1.26267 1.09617 1.16443 1.04460 1.26286 1.10261 1.04641 1.15801 1.26288 1.10252 1.04632 1.15832 1.21377 0.96185 0.95329 0.99242 1.21367 0.98043 0.97073 0.97530 1.21368 0.92405 1.00026 1.09453 0.89904 0.90233 0.90666 0.83637 0.84464 0.90839 0.77838 0.90249 0.90049 0.85349 0.84318 0.91330 0.90653 0.91346 0.91431 0.90648 0.90867 0.90902 0.90637 0.91437 0.84390 0.85616 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.39 10.01 71.23 0.71 1.10 16 2 C -0.05 -0.09 5.88 -19.88 -0.12 -0.20 16 3 C -0.16 -0.38 9.70 22.29 0.22 -0.17 16 4 C -0.09 -0.43 8.66 22.26 0.19 -0.24 16 5 C -0.17 -1.08 5.28 -19.77 -0.10 -1.18 16 6 C -0.09 -0.53 2.33 71.23 0.17 -0.36 16 7 O -0.55 -4.45 12.65 -148.98 -1.89 -6.33 16 8 Si 1.04 4.23 25.74 68.60 1.77 5.99 16 9 H -0.24 -0.56 7.11 99.48 0.71 0.15 16 10 H -0.27 -1.78 7.11 99.48 0.71 -1.07 16 11 H -0.26 -1.19 6.74 99.48 0.67 -0.52 16 12 C 0.14 0.74 6.62 22.51 0.15 0.89 16 13 O -0.32 -1.59 9.03 -92.39 -0.83 -2.42 16 14 C 0.10 0.08 4.87 71.23 0.35 0.43 16 15 C -0.10 -0.27 5.51 -19.87 -0.11 -0.38 16 16 C -0.12 -0.23 9.70 22.27 0.22 -0.01 16 17 C -0.10 -0.04 9.29 22.27 0.21 0.16 16 18 C -0.37 0.22 4.59 22.27 0.10 0.32 16 19 Si 1.13 -6.27 12.32 68.60 0.85 -5.42 16 20 C -0.46 1.75 8.65 113.37 0.98 2.73 16 21 C -0.46 1.83 8.53 113.37 0.97 2.79 16 22 C -0.46 1.82 8.53 113.37 0.97 2.79 16 23 C -0.10 -0.07 9.29 22.27 0.21 0.14 16 24 C -0.12 -0.29 9.70 22.27 0.22 -0.07 16 25 C -0.21 -0.58 8.69 22.36 0.19 -0.38 16 26 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 27 H 0.08 -0.37 8.08 -2.39 -0.02 -0.39 16 28 H 0.07 -0.34 8.08 -2.39 -0.02 -0.36 16 29 H 0.15 -0.29 8.06 -2.91 -0.02 -0.31 16 30 H 0.14 0.29 4.89 -2.91 -0.01 0.28 16 31 H 0.07 0.40 7.83 -2.39 -0.02 0.38 16 32 H 0.37 1.75 8.61 -74.06 -0.64 1.11 16 33 H 0.08 -0.10 7.60 -2.39 -0.02 -0.12 16 34 H 0.08 -0.13 7.61 -2.39 -0.02 -0.15 16 35 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 36 H 0.14 -0.50 7.43 -2.91 -0.02 -0.52 16 37 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 38 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 39 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.33 7.69 -2.39 -0.02 -0.34 16 43 H 0.07 -0.32 7.69 -2.39 -0.02 -0.34 16 44 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 45 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 46 H 0.14 -0.47 7.43 -2.91 -0.02 -0.49 16 47 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 48 H 0.14 -0.18 6.30 -2.91 -0.02 -0.20 16 Total: 0.00 -11.60 393.81 6.42 -5.18 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: 1.02 Total: -5.36 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.51 Total: 8.36 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -2.72 Total: -8.75 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.61 Total: 0.57 kcal Total: -11.60 6.42 -5.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12861320_9276060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.975 kcal (2) G-P(sol) polarization free energy of solvation -11.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds