Wall clock time and date at job start Mon Mar 8 2021 14:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00314 * 2 1 4 4 C 1.53004 * 112.84924 * 294.01242 * 3 2 1 5 5 F 1.39896 * 109.47151 * 195.94834 * 4 3 2 6 6 F 1.39898 * 109.47055 * 315.95197 * 4 3 2 7 7 F 1.39909 * 109.46908 * 75.94624 * 4 3 2 8 8 C 1.54049 * 113.69373 * 162.73850 * 3 2 1 9 9 C 1.53780 * 86.98500 * 270.87374 * 8 3 2 10 10 H 1.09008 * 113.61297 * 219.97851 * 9 8 3 11 11 C 1.52996 * 113.61633 * 89.16088 * 9 8 3 12 12 O 1.42904 * 109.47228 * 85.86475 * 11 9 8 13 13 C 1.35943 * 116.99909 * 180.02562 * 12 11 9 14 14 C 1.38790 * 120.06336 * 269.72228 * 13 12 11 15 15 Cl 1.73598 * 120.03036 * 359.97438 * 14 13 12 16 16 C 1.38261 * 119.93668 * 179.70409 * 14 13 12 17 17 C 1.38262 * 120.06685 * 0.59297 * 16 14 13 18 18 C 1.50697 * 119.94009 * 179.70431 * 17 16 14 19 19 O 1.42903 * 109.47078 * 119.97580 * 18 17 16 20 20 Si 1.86297 * 109.46917 * 359.97438 * 18 17 16 21 21 C 1.38255 * 120.12135 * 359.67967 * 17 16 14 22 22 C 1.38266 * 120.06746 * 0.02562 * 21 17 16 23 23 Cl 1.73602 * 120.03559 * 179.97438 * 22 21 17 24 24 C 1.53774 * 87.17346 * 334.56758 * 9 8 3 25 25 H 1.08993 * 109.46823 * 184.83209 * 1 2 3 26 26 H 1.09003 * 109.46661 * 304.83089 * 1 2 3 27 27 H 1.09001 * 109.46740 * 64.83160 * 1 2 3 28 28 H 1.08996 * 113.61484 * 156.36662 * 8 3 2 29 29 H 1.09005 * 113.69223 * 25.38636 * 8 3 2 30 30 H 1.09001 * 109.47322 * 205.86220 * 11 9 8 31 31 H 1.08997 * 109.47251 * 325.86242 * 11 9 8 32 32 H 1.08006 * 119.97039 * 180.27852 * 16 14 13 33 33 H 1.08991 * 109.46780 * 239.98034 * 18 17 16 34 34 H 0.96694 * 114.00166 * 300.00180 * 19 18 17 35 35 H 1.48493 * 110.00414 * 58.68096 * 20 18 17 36 36 H 1.48500 * 109.99793 * 180.02562 * 20 18 17 37 37 H 1.08001 * 119.96730 * 179.97438 * 21 17 16 38 38 H 1.08999 * 113.61635 * 140.02668 * 24 9 8 39 39 H 1.08998 * 113.61846 * 270.93070 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7279 2.0815 -1.2880 5 9 2.6026 3.1695 -1.3781 6 9 1.9148 1.2402 -2.3899 7 9 0.4077 2.5445 -1.2734 8 6 3.4927 1.3229 0.4186 9 6 2.9982 1.4841 1.8657 10 1 3.5937 2.1809 2.4557 11 6 2.7567 0.1542 2.5826 12 8 3.9805 -0.3047 3.1602 13 6 3.9396 -1.4824 3.8381 14 6 3.6682 -1.4921 5.1992 15 17 3.3812 0.0002 6.0385 16 6 3.6212 -2.6918 5.8848 17 6 3.8563 -3.8802 5.2184 18 6 3.8109 -5.1856 5.9699 19 8 2.8007 -6.0247 5.4064 20 14 3.4178 -4.8576 7.7611 21 6 4.1324 -3.8731 3.8637 22 6 4.1748 -2.6769 3.1716 23 17 4.5223 -2.6689 1.4708 24 6 1.7212 2.1085 1.2792 25 1 -0.3633 -1.0240 0.0866 26 1 -0.3633 0.5870 0.8436 27 1 -0.3633 0.4371 -0.9301 28 1 4.0415 2.1877 0.0458 29 1 4.0105 0.3811 0.2365 30 1 2.0143 0.2946 3.3683 31 1 2.3934 -0.5835 1.8672 32 1 3.4056 -2.7003 6.9431 33 1 4.7785 -5.6816 5.8952 34 1 1.9116 -5.6459 5.4387 35 1 2.1157 -4.1530 7.8747 36 1 3.3708 -6.1371 8.5133 37 1 4.3161 -4.8028 3.3457 38 1 0.8096 1.8007 1.7913 39 1 1.7864 3.1878 1.1412 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_12913552_17321600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:24:24 Heat of formation + Delta-G solvation = -202.050023 kcal Electronic energy + Delta-G solvation = -32543.981795 eV Core-core repulsion = 27285.573785 eV Total energy + Delta-G solvation = -5258.408011 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.034 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.26564 -48.79872 -48.74010 -41.72866 -41.12620 -39.19672 -37.85922 -37.82440 -37.15543 -36.90461 -32.27398 -31.92251 -30.38692 -28.22123 -27.49900 -26.78388 -26.22792 -24.36300 -23.40478 -22.75596 -20.65079 -19.88776 -19.57269 -19.38283 -19.20222 -18.59938 -17.94207 -17.24254 -17.01710 -16.79075 -16.48768 -16.28300 -15.87606 -15.79997 -15.68793 -15.63057 -15.62179 -15.41759 -15.16395 -14.95783 -14.90471 -14.85734 -14.69594 -14.20606 -13.95403 -13.71131 -13.48277 -13.45063 -13.19552 -13.02989 -12.70983 -12.62538 -12.31630 -12.21553 -12.15986 -12.09954 -11.92468 -11.78427 -11.62477 -11.17523 -10.73642 -10.71295 -9.95865 -9.83073 -4.93365 -0.40432 -0.26122 0.68998 1.09281 1.28832 1.52381 1.58182 1.88684 1.95573 2.08330 2.36538 2.56051 2.62617 2.89159 3.29158 3.30796 3.36351 3.41711 3.48385 3.69922 3.74578 3.87376 3.97367 4.13969 4.22042 4.26256 4.30748 4.38103 4.47442 4.52189 4.53909 4.56221 4.64599 4.70801 4.75632 4.79575 4.84571 4.96696 5.05055 5.20587 5.71273 6.16780 6.45156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.344 6.344 3 C 0.037 3.963 4 C 0.432 3.568 5 F -0.176 7.176 6 F -0.189 7.189 7 F -0.184 7.184 8 C -0.113 4.113 9 C -0.090 4.090 10 H 0.115 0.885 11 C 0.077 3.923 12 O -0.324 6.324 13 C 0.113 3.887 14 C -0.049 4.049 15 Cl -0.039 7.039 16 C -0.089 4.089 17 C -0.092 4.092 18 C -0.075 4.075 19 O -0.542 6.542 20 Si 0.754 3.246 21 C -0.068 4.068 22 C -0.055 4.055 23 Cl -0.045 7.045 24 C -0.133 4.133 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.138 0.862 34 H 0.389 0.611 35 H -0.275 1.275 36 H -0.297 1.297 37 H 0.154 0.846 38 H 0.105 0.895 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 0.593 4.695 4.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.261 6.261 3 C -0.006 4.006 4 C 0.378 3.622 5 F -0.158 7.158 6 F -0.170 7.170 7 F -0.166 7.166 8 C -0.150 4.150 9 C -0.109 4.109 10 H 0.133 0.867 11 C 0.003 3.997 12 O -0.241 6.241 13 C 0.067 3.933 14 C -0.077 4.077 15 Cl -0.010 7.010 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.184 4.184 19 O -0.350 6.350 20 Si 0.659 3.341 21 C -0.087 4.087 22 C -0.083 4.083 23 Cl -0.016 7.016 24 C -0.171 4.171 25 H 0.129 0.871 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.238 0.762 35 H -0.201 1.201 36 H -0.225 1.225 37 H 0.172 0.828 38 H 0.123 0.877 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.719 0.182 5.086 5.140 hybrid contribution -1.429 0.109 -1.488 2.066 sum -2.147 0.292 3.598 4.200 Atomic orbital electron populations 1.23263 0.78882 1.05173 1.01721 1.88092 1.21904 1.22342 1.93807 1.24239 1.00541 0.86281 0.89541 1.21538 0.74127 0.78707 0.87850 1.93169 1.69334 1.56624 1.96631 1.93185 1.94887 1.71295 1.57651 1.93183 1.36848 1.89695 1.96856 1.23352 0.90514 1.05491 0.95620 1.21997 0.97759 0.96114 0.94995 0.86729 1.22800 0.84445 0.95745 0.96701 1.86032 1.33882 1.34191 1.70038 1.18161 1.00465 0.85600 0.89065 1.21178 1.05268 0.89424 0.91832 1.98409 1.94232 1.31727 1.76591 1.21141 0.98901 0.89550 1.01121 1.20266 0.99887 0.95489 0.93703 1.25197 0.96483 0.89339 1.07377 1.86612 1.20355 1.45935 1.82126 0.94132 0.85660 0.80882 0.73474 1.21097 0.96869 0.96890 0.93820 1.21379 1.05717 0.94093 0.87104 1.98417 1.93098 1.98808 1.11249 1.23624 0.99774 1.01478 0.92184 0.87114 0.91155 0.93710 0.85823 0.89446 0.91510 0.90945 0.81943 0.84396 0.76168 1.20118 1.22469 0.82821 0.87672 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.15 16 2 O -0.34 -0.38 8.35 -148.98 -1.24 -1.62 16 3 C 0.04 -0.02 0.85 -10.17 -0.01 -0.03 16 4 C 0.43 1.27 2.52 71.98 0.18 1.45 16 5 F -0.18 -0.51 15.81 44.97 0.71 0.20 16 6 F -0.19 -1.36 17.10 44.97 0.77 -0.59 16 7 F -0.18 -0.58 15.40 44.97 0.69 0.11 16 8 C -0.11 0.16 6.92 31.21 0.22 0.38 16 9 C -0.09 0.32 4.19 -10.27 -0.04 0.27 16 10 H 0.11 -0.55 8.14 -2.38 -0.02 -0.57 16 11 C 0.08 -0.08 5.66 71.98 0.41 0.33 16 12 O -0.32 -0.77 8.98 -92.91 -0.83 -1.60 16 13 C 0.11 0.22 5.71 22.53 0.13 0.35 16 14 C -0.05 0.01 6.33 22.41 0.14 0.15 16 15 Cl -0.04 0.01 28.50 -2.72 -0.08 -0.07 16 16 C -0.09 0.31 8.45 22.28 0.19 0.49 16 17 C -0.09 0.33 5.39 -19.86 -0.11 0.22 16 18 C -0.07 0.37 2.82 71.24 0.20 0.57 16 19 O -0.54 1.05 12.77 -148.98 -1.90 -0.85 16 20 Si 0.75 -4.03 29.78 68.60 2.04 -1.99 16 21 C -0.07 0.08 9.39 22.28 0.21 0.29 16 22 C -0.06 -0.09 6.33 22.41 0.14 0.05 16 23 Cl -0.04 -0.15 28.50 -2.72 -0.08 -0.23 16 24 C -0.13 0.69 6.51 31.12 0.20 0.90 16 25 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.07 -0.43 6.55 -2.39 -0.02 -0.45 16 27 H 0.04 -0.04 6.69 -2.39 -0.02 -0.06 16 28 H 0.12 -0.42 7.02 -2.39 -0.02 -0.44 16 29 H 0.09 0.10 8.10 -2.38 -0.02 0.08 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 0.05 6.09 -2.39 -0.01 0.04 16 32 H 0.16 -1.17 4.87 -2.91 -0.01 -1.18 16 33 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 34 H 0.39 -2.92 8.70 -74.06 -0.64 -3.56 16 35 H -0.28 0.54 7.11 99.48 0.71 1.25 16 36 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 37 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 38 H 0.10 -0.77 6.63 -2.39 -0.02 -0.79 16 39 H 0.12 -0.91 8.05 -2.39 -0.02 -0.93 16 Total: 0.00 -12.56 363.91 3.64 -8.91 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: 0.54 Total: -8.87 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 3.03 Total: 6.59 kcal Atomic # 8 Polarization: -0.09 SS G_CDS: -3.98 Total: -4.07 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 2.17 Total: -0.28 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.04 Total: -1.99 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.16 Total: -0.29 kcal Total: -12.56 3.64 -8.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_12913552_17321600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.138 kcal (2) G-P(sol) polarization free energy of solvation -12.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds