Wall clock time and date at job start Mon Mar 8 2021 12:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35958 * 116.99807 * 180.02562 * 12 11 10 14 14 C 1.38662 * 120.04669 * 0.02562 * 13 12 11 15 15 C 1.38219 * 120.01125 * 180.02562 * 14 13 12 16 16 C 1.38215 * 120.11317 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.94941 * 179.97438 * 16 15 14 18 18 O 1.42889 * 109.47239 * 254.99923 * 17 16 15 19 19 Si 1.86302 * 109.47045 * 134.99740 * 17 16 15 20 20 H 1.48503 * 109.46887 * 59.99861 * 19 17 16 21 21 H 1.48498 * 109.47352 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47201 * 300.00116 * 19 17 16 23 23 C 1.38495 * 120.09704 * 359.97438 * 16 15 14 24 24 F 1.35099 * 120.00333 * 180.02562 * 23 16 15 25 25 C 1.38499 * 119.98555 * 359.72974 * 23 16 15 26 26 F 1.35101 * 120.05269 * 180.27561 * 25 23 16 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.07994 * 119.99591 * 0.02562 * 14 13 12 49 49 H 1.07992 * 119.94355 * 180.02562 * 15 14 13 50 50 H 1.09001 * 109.47310 * 14.99952 * 17 16 15 51 51 H 0.96704 * 114.00499 * 300.00170 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6979 -7.6070 4.6630 14 6 2.4928 -7.1879 5.7190 15 6 2.8077 -8.0666 6.7384 16 6 2.3311 -9.3636 6.7079 17 6 2.6772 -10.3187 7.8210 18 8 3.6636 -11.2458 7.3637 19 14 1.1475 -11.2459 8.3418 20 1 0.6123 -12.0074 7.1846 21 1 1.4886 -12.1875 9.4382 22 1 0.1224 -10.2824 8.8171 23 6 1.5359 -9.7867 5.6559 24 9 1.0706 -11.0548 5.6283 25 6 1.2128 -8.9079 4.6354 26 9 0.4326 -9.3176 3.6114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8659 -6.1748 5.7450 49 1 3.4265 -7.7389 7.5606 50 1 3.0700 -9.7598 8.6704 51 1 3.3819 -11.7789 6.6076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13025868_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:56:54 Heat of formation + Delta-G solvation = -232.293530 kcal Electronic energy + Delta-G solvation = -30412.148178 eV Core-core repulsion = 25878.426451 eV Total energy + Delta-G solvation = -4533.721726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.73979 -49.63896 -41.37968 -39.39301 -38.34555 -37.34194 -36.89575 -33.83381 -31.81314 -31.61756 -29.52775 -29.17001 -27.92923 -27.49382 -27.45080 -26.19892 -24.35006 -23.22435 -22.42817 -20.49505 -19.92410 -19.11823 -18.59909 -18.00908 -17.81612 -17.72790 -17.56087 -17.25145 -16.48349 -16.24414 -16.04628 -15.91850 -15.90406 -15.67777 -15.36595 -15.16650 -14.93500 -14.76404 -14.65786 -14.14249 -14.09945 -14.05222 -13.72512 -13.59409 -13.52404 -13.35294 -13.32735 -13.03788 -13.00053 -12.97237 -12.92208 -12.52521 -12.44780 -12.35165 -12.14218 -12.00910 -11.78144 -11.77400 -11.53161 -11.43873 -11.26499 -10.60382 -10.46600 -10.14485 -9.98951 -9.45354 -0.35075 -0.21283 1.09108 1.20517 1.47406 1.51648 1.64274 1.72569 1.94100 1.96049 2.12176 2.34886 2.71266 3.10488 3.29438 3.39477 3.47950 3.64235 3.68640 3.77602 3.83204 3.92011 4.05077 4.06499 4.07287 4.11518 4.21103 4.36595 4.40558 4.41110 4.57466 4.60639 4.63278 4.64166 4.71044 4.73353 4.75445 4.80147 4.86674 4.89722 4.94414 4.98469 5.05090 5.05332 5.13736 5.28263 5.32428 5.33038 5.35398 5.44217 5.46310 5.51888 5.98159 6.40139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.125 4.125 11 C 0.056 3.944 12 O -0.298 6.298 13 C 0.132 3.868 14 C -0.190 4.190 15 C -0.036 4.036 16 C -0.162 4.162 17 C -0.072 4.072 18 O -0.533 6.533 19 Si 0.930 3.070 20 H -0.229 1.229 21 H -0.251 1.251 22 H -0.250 1.250 23 C 0.098 3.902 24 F -0.112 7.112 25 C 0.041 3.959 26 F -0.117 7.117 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.149 0.851 49 H 0.149 0.851 50 H 0.125 0.875 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 4.128 2.418 5.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.015 3.985 10 C -0.162 4.162 11 C -0.019 4.019 12 O -0.211 6.211 13 C 0.085 3.915 14 C -0.209 4.209 15 C -0.054 4.054 16 C -0.164 4.164 17 C -0.182 4.182 18 O -0.338 6.338 19 Si 0.750 3.250 20 H -0.152 1.152 21 H -0.175 1.175 22 H -0.173 1.173 23 C 0.078 3.922 24 F -0.090 7.090 25 C 0.020 3.980 26 F -0.095 7.095 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.167 0.833 49 H 0.167 0.833 50 H 0.143 0.857 51 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.536 3.661 2.781 4.847 hybrid contribution 0.211 0.468 -0.636 0.818 sum 1.747 4.129 2.145 4.970 Atomic orbital electron populations 1.21515 0.93776 1.02040 1.01828 1.25791 1.00727 1.02653 1.12711 1.21558 1.00773 0.94884 1.02186 1.21516 1.00599 1.00270 0.96779 0.76694 0.63008 0.53261 0.65052 1.27036 1.07072 1.09557 1.17654 1.27037 1.25002 1.04823 1.04465 1.85335 1.79318 1.46101 1.47450 1.21783 0.98122 0.91350 0.87287 1.21534 1.03602 0.93233 0.97857 1.22873 0.98948 0.80009 1.00096 1.86146 1.70477 1.22183 1.42280 1.18689 0.95088 0.88520 0.89244 1.21308 1.02536 1.02200 0.94883 1.20806 0.96057 0.90736 0.97829 1.20172 1.01225 0.97733 0.97254 1.24872 1.03262 0.93232 0.96843 1.86544 1.40991 1.53036 1.53265 0.86205 0.75942 0.81529 0.81289 1.15184 1.17466 1.17312 1.17266 0.99044 0.80065 0.95860 1.91617 1.86744 1.34948 1.95692 1.16731 1.00752 0.91418 0.89054 1.91565 1.71730 1.90299 1.55952 0.92700 0.92752 0.92138 0.92505 0.92469 0.92507 0.92134 0.92757 0.92692 0.91512 0.90641 0.90815 0.90808 0.90639 0.91508 0.92302 0.92285 0.89390 0.89389 0.90998 0.91002 0.83310 0.83307 0.85677 0.77520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.05 7.85 37.16 0.29 0.34 16 2 C -0.38 0.30 0.53 -90.62 -0.05 0.26 16 3 C -0.14 0.15 7.85 37.16 0.29 0.44 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -2.51 8.45 -169.99 -1.44 -3.94 16 6 C -0.51 0.88 8.50 101.05 0.86 1.73 16 7 C -0.51 0.86 8.50 101.05 0.86 1.72 16 8 O -0.62 0.47 8.56 -35.23 -0.30 0.17 16 9 C 0.09 -0.23 5.12 37.16 0.19 -0.04 16 10 C -0.12 0.23 5.95 -26.73 -0.16 0.07 16 11 C 0.06 -0.14 4.74 37.16 0.18 0.03 16 12 O -0.30 -0.30 10.00 -19.61 -0.20 -0.50 16 13 C 0.13 0.11 6.69 -39.19 -0.26 -0.16 16 14 C -0.19 0.36 9.04 -39.43 -0.36 0.01 16 15 C -0.04 0.07 9.66 -39.60 -0.38 -0.31 16 16 C -0.16 0.06 4.78 -104.54 -0.50 -0.44 16 17 C -0.07 0.07 2.81 36.00 0.10 0.17 16 18 O -0.53 -0.13 12.88 -35.23 -0.45 -0.58 16 19 Si 0.93 0.05 26.09 -169.99 -4.43 -4.38 16 20 H -0.23 -0.26 5.29 56.52 0.30 0.04 16 21 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 22 H -0.25 -0.20 7.11 56.52 0.40 0.21 16 23 C 0.10 0.15 6.62 -39.39 -0.26 -0.11 16 24 F -0.11 -0.25 12.51 2.25 0.03 -0.22 16 25 C 0.04 0.10 7.32 -39.25 -0.29 -0.18 16 26 F -0.12 -0.53 17.03 2.25 0.04 -0.49 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 30 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.06 -0.10 7.79 -51.93 -0.40 -0.50 16 33 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 36 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 37 H 0.07 -0.14 7.79 -51.92 -0.40 -0.54 16 38 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 39 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 41 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 42 H 0.06 -0.24 7.21 -51.93 -0.37 -0.62 16 43 H 0.06 -0.24 7.21 -51.93 -0.37 -0.62 16 44 H 0.09 -0.09 8.14 -51.93 -0.42 -0.52 16 45 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.07 -0.30 7.66 -51.93 -0.40 -0.70 16 47 H 0.07 -0.31 7.66 -51.93 -0.40 -0.71 16 48 H 0.15 -0.70 6.30 -52.49 -0.33 -1.03 16 49 H 0.15 -0.70 8.00 -52.49 -0.42 -1.12 16 50 H 0.13 -0.37 7.77 -51.93 -0.40 -0.77 16 51 H 0.38 -0.79 8.42 45.56 0.38 -0.40 16 LS Contribution 412.98 15.07 6.22 6.22 Total: 0.00 -5.85 412.98 -7.90 -13.75 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -8.17 Total: -13.89 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 0.80 Total: 3.87 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -0.95 Total: -0.91 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.07 Total: -0.71 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: -5.87 Total: -8.32 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -5.85 -7.90 -13.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13025868_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.546 kcal (2) G-P(sol) polarization free energy of solvation -5.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds