Wall clock time and date at job start Mon Mar 8 2021 13:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38122 * 119.97402 * 2 1 4 4 C 1.38752 * 119.94896 * 180.02562 * 3 2 1 5 5 O 1.35897 * 120.05897 * 179.97438 * 4 3 2 6 6 C 1.42901 * 117.00083 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47113 * 179.97438 * 6 5 4 8 8 C 1.38231 * 120.00162 * 269.72948 * 7 6 5 9 9 C 1.38237 * 120.00282 * 179.76537 * 8 7 6 10 10 C 1.38232 * 119.99527 * 0.50636 * 9 8 7 11 11 Si 1.86801 * 119.99805 * 179.72520 * 10 9 8 12 12 C 1.86304 * 109.47252 * 270.01901 * 11 10 9 13 13 C 1.86297 * 109.47362 * 30.02015 * 11 10 9 14 14 C 1.86304 * 109.46989 * 150.02152 * 11 10 9 15 15 C 1.38238 * 120.00404 * 359.74635 * 10 9 8 16 16 C 1.38234 * 119.99593 * 359.97438 * 15 10 9 17 17 C 1.38718 * 119.88542 * 359.69950 * 4 3 2 18 18 C 1.38163 * 119.94360 * 0.55862 * 17 4 3 19 19 C 1.38251 * 120.05527 * 359.46174 * 18 17 4 20 20 C 1.50696 * 119.94234 * 180.27923 * 19 18 17 21 21 O 1.42900 * 109.47113 * 105.00225 * 20 19 18 22 22 Si 1.86305 * 109.47295 * 345.00158 * 20 19 18 23 23 H 1.48501 * 109.46865 * 60.00376 * 22 20 19 24 24 H 1.48501 * 109.47000 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46886 * 299.99794 * 22 20 19 26 26 H 1.09007 * 109.46565 * 270.01395 * 1 2 3 27 27 H 1.08991 * 109.47562 * 30.01830 * 1 2 3 28 28 H 1.09009 * 109.47026 * 150.02408 * 1 2 3 29 29 H 1.07997 * 120.02543 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47080 * 299.99703 * 6 5 4 31 31 H 1.08995 * 109.47204 * 59.99710 * 6 5 4 32 32 H 1.08008 * 120.00116 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00124 * 180.22465 * 9 8 7 34 34 H 1.09000 * 109.46770 * 59.99434 * 12 11 10 35 35 H 1.08990 * 109.47451 * 180.02562 * 12 11 10 36 36 H 1.09006 * 109.46753 * 299.99916 * 12 11 10 37 37 H 1.09003 * 109.47103 * 59.99974 * 13 11 10 38 38 H 1.09004 * 109.47372 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.46608 * 299.99986 * 13 11 10 40 40 H 1.08998 * 109.47336 * 60.00260 * 14 11 10 41 41 H 1.09004 * 109.46885 * 179.97438 * 14 11 10 42 42 H 1.08995 * 109.47215 * 299.99510 * 14 11 10 43 43 H 1.08001 * 119.99995 * 179.97438 * 15 10 9 44 44 H 1.08002 * 119.99887 * 179.97438 * 16 15 10 45 45 H 1.07998 * 120.02548 * 180.29827 * 17 4 3 46 46 H 1.08002 * 119.97507 * 179.74750 * 18 17 4 47 47 H 1.09006 * 109.47341 * 225.00418 * 20 19 18 48 48 H 0.96698 * 114.00557 * 300.00279 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1965 0.0000 4 6 3.5845 1.1959 -0.0005 5 8 4.2658 2.3718 -0.0011 6 6 5.6927 2.2949 -0.0010 7 6 6.2707 3.6867 -0.0023 8 6 6.5410 4.3218 -1.2000 9 6 7.0667 5.6003 -1.2012 10 6 7.3319 6.2396 -0.0046 11 14 8.0494 7.9643 -0.0061 12 6 9.9097 7.8630 -0.0061 13 6 7.4771 8.8737 -1.5280 14 6 7.4771 8.8763 1.5143 15 6 7.0664 5.6025 1.1932 16 6 6.5354 4.3262 1.1943 17 6 4.2752 -0.0071 0.0052 18 6 3.5803 -1.2013 -0.0002 19 6 2.1978 -1.1980 -0.0001 20 6 1.4425 -2.5020 0.0004 21 8 0.9021 -2.7389 1.3018 22 14 2.5993 -3.8899 -0.4538 23 1 3.7041 -3.9575 0.5362 24 1 1.8551 -5.1750 -0.4527 25 1 3.1609 -3.6437 -1.8063 26 1 -0.3633 0.0003 1.0278 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8903 -0.5135 29 1 1.6570 2.1318 -0.0004 30 1 6.0279 1.7627 0.8892 31 1 6.0279 1.7619 -0.8907 32 1 6.3384 3.8204 -2.1349 33 1 7.2745 6.0978 -2.1369 34 1 10.2445 7.3293 -0.8956 35 1 10.3284 8.8693 -0.0066 36 1 10.2445 7.3309 0.8844 37 1 6.3887 8.9330 -1.5280 38 1 7.8961 9.8800 -1.5292 39 1 7.8119 8.3400 -2.4175 40 1 7.8121 8.3443 2.4047 41 1 7.8962 9.8826 1.5136 42 1 6.3888 8.9357 1.5143 43 1 7.2740 6.1019 2.1280 44 1 6.3284 3.8283 2.1300 45 1 5.3552 -0.0102 0.0097 46 1 4.1176 -2.1382 0.0002 47 1 0.6316 -2.4524 -0.7263 48 1 1.5685 -2.7949 2.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13420936_9276060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:08:40 Heat of formation + Delta-G solvation = -72.305723 kcal Electronic energy + Delta-G solvation = -24749.749334 eV Core-core repulsion = 21278.726019 eV Total energy + Delta-G solvation = -3471.023315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40489 -40.17834 -39.06251 -37.14001 -33.58388 -33.27084 -31.90601 -31.60769 -29.60490 -28.46775 -28.46377 -28.43095 -27.03443 -26.08679 -23.50447 -23.33280 -22.34523 -21.49133 -18.87393 -18.39751 -17.73711 -17.06214 -17.03731 -16.60579 -16.14534 -15.76761 -15.63989 -15.50648 -14.96691 -14.60317 -14.39475 -14.28591 -14.26718 -14.20432 -14.11755 -13.88652 -13.87292 -13.55247 -13.50101 -13.28553 -13.28254 -13.12503 -13.09490 -12.94208 -12.65371 -12.26658 -12.18642 -12.02740 -11.90268 -11.71793 -11.46863 -11.06280 -10.92721 -10.85501 -10.35560 -9.80269 -9.76054 -9.71080 -9.12000 0.15049 0.33270 0.35819 0.52534 1.16821 1.40626 1.52763 1.67910 1.82617 1.86916 1.91454 2.27889 2.52129 2.67850 3.01682 3.51548 3.63187 3.75759 3.77371 3.86326 3.92142 4.05616 4.17016 4.20110 4.26543 4.37224 4.45161 4.49002 4.64756 4.65079 4.68070 4.69407 4.72940 4.73186 4.73775 4.74362 4.74884 4.84954 4.97973 5.01558 5.12420 5.13094 5.30461 5.33253 5.39165 5.44150 5.48219 5.51439 5.60006 5.60189 5.63555 5.77488 6.08922 6.42337 6.57975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.015 4.015 3 C -0.154 4.154 4 C 0.141 3.859 5 O -0.307 6.307 6 C 0.100 3.900 7 C -0.089 4.089 8 C -0.106 4.106 9 C -0.092 4.092 10 C -0.361 4.361 11 Si 1.060 2.940 12 C -0.449 4.449 13 C -0.450 4.450 14 C -0.450 4.450 15 C -0.092 4.092 16 C -0.106 4.106 17 C -0.212 4.212 18 C -0.082 4.082 19 C -0.161 4.161 20 C -0.074 4.074 21 O -0.537 6.537 22 Si 0.946 3.054 23 H -0.253 1.253 24 H -0.254 1.254 25 H -0.250 1.250 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.130 0.870 46 H 0.125 0.875 47 H 0.117 0.883 48 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 1.005 -0.112 2.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.015 4.015 3 C -0.172 4.172 4 C 0.096 3.904 5 O -0.221 6.221 6 C 0.026 3.974 7 C -0.089 4.089 8 C -0.125 4.125 9 C -0.110 4.110 10 C -0.402 4.402 11 Si 1.252 2.748 12 C -0.556 4.556 13 C -0.558 4.558 14 C -0.558 4.558 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.231 4.231 18 C -0.100 4.100 19 C -0.162 4.162 20 C -0.184 4.184 21 O -0.342 6.342 22 Si 0.770 3.230 23 H -0.178 1.178 24 H -0.178 1.178 25 H -0.174 1.174 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.134 0.866 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.073 0.466 -0.675 2.229 hybrid contribution 0.482 0.045 0.387 0.619 sum 2.554 0.511 -0.288 2.621 Atomic orbital electron populations 1.20867 0.90205 1.02991 1.03238 1.19546 0.96317 0.91101 0.94534 1.20361 0.90821 0.98785 1.07279 1.19018 0.91756 0.84590 0.95050 1.86174 1.19584 1.28041 1.88258 1.21641 0.78526 0.94990 1.02272 1.19451 1.00435 0.94934 0.94068 1.21151 0.98660 0.95445 0.97196 1.21081 0.97361 0.94255 0.98254 1.27486 1.03615 1.14988 0.94161 0.78182 0.66642 0.62654 0.67362 1.26122 1.20364 1.04544 1.04615 1.26137 1.06243 1.08346 1.15035 1.26136 1.06243 1.08368 1.15012 1.21083 0.97335 0.94293 0.98243 1.21149 0.98639 0.95441 0.97216 1.21150 1.00273 0.91932 1.09718 1.20883 0.93530 0.97859 0.97697 1.20020 0.93384 0.95623 1.07178 1.24865 1.04703 0.99598 0.89265 1.86511 1.37050 1.94530 1.16154 0.85754 0.78027 0.78088 0.81178 1.17754 1.17753 1.17362 0.90207 0.91453 0.90750 0.84926 0.91002 0.91000 0.86130 0.85869 0.91167 0.90995 0.91171 0.91022 0.90922 0.91174 0.91173 0.90924 0.91022 0.85868 0.86132 0.85250 0.85753 0.86568 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.02 9.54 36.00 0.34 0.33 16 2 C -0.01 -0.02 5.88 -104.65 -0.62 -0.64 16 3 C -0.15 -0.36 9.64 -39.43 -0.38 -0.74 16 4 C 0.14 0.37 6.69 -39.21 -0.26 0.10 16 5 O -0.31 -0.92 10.12 -19.42 -0.20 -1.11 16 6 C 0.10 0.07 4.87 36.01 0.18 0.25 16 7 C -0.09 -0.14 5.51 -104.63 -0.58 -0.71 16 8 C -0.11 -0.13 9.70 -39.58 -0.38 -0.51 16 9 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 10 C -0.36 0.03 4.59 -39.58 -0.18 -0.15 16 11 Si 1.06 -2.65 12.32 -169.99 -2.09 -4.75 16 12 C -0.45 0.72 8.65 101.05 0.87 1.59 16 13 C -0.45 0.78 8.53 101.05 0.86 1.64 16 14 C -0.45 0.78 8.53 101.05 0.86 1.64 16 15 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 16 C -0.11 -0.13 9.70 -39.58 -0.38 -0.51 16 17 C -0.21 -0.29 9.04 -39.43 -0.36 -0.65 16 18 C -0.08 -0.08 8.65 -39.60 -0.34 -0.43 16 19 C -0.16 -0.19 5.26 -104.60 -0.55 -0.74 16 20 C -0.07 0.00 2.04 36.00 0.07 0.08 16 21 O -0.54 -0.23 12.81 -35.23 -0.45 -0.68 16 22 Si 0.95 -0.24 25.49 -169.99 -4.33 -4.58 16 23 H -0.25 0.08 6.73 56.52 0.38 0.46 16 24 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 25 H -0.25 -0.15 7.11 56.52 0.40 0.26 16 26 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 27 H 0.07 -0.04 8.08 -51.93 -0.42 -0.46 16 28 H 0.07 -0.03 6.23 -51.92 -0.32 -0.35 16 29 H 0.13 0.21 8.06 -52.49 -0.42 -0.21 16 30 H 0.07 -0.04 7.59 -51.93 -0.39 -0.43 16 31 H 0.07 -0.04 7.61 -51.93 -0.40 -0.43 16 32 H 0.12 -0.01 8.06 -52.48 -0.42 -0.43 16 33 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 39 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 40 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 43 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 44 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 45 H 0.13 -0.06 6.30 -52.49 -0.33 -0.39 16 46 H 0.12 -0.06 4.88 -52.49 -0.26 -0.31 16 47 H 0.12 -0.10 6.49 -51.93 -0.34 -0.43 16 48 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 LS Contribution 391.26 15.07 5.90 5.90 Total: 0.00 -5.59 391.26 -9.80 -15.39 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: -7.04 Total: -9.90 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -1.58 Total: -0.27 kcal Atomic # 8 Polarization: -1.14 SS G_CDS: -0.65 Total: -1.79 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: -6.43 Total: -9.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -5.59 -9.80 -15.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13420936_9276060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.915 kcal (2) G-P(sol) polarization free energy of solvation -5.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds