Wall clock time and date at job start Mon Mar 8 2021 13:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35906 * 116.99765 * 179.97438 * 10 9 8 12 12 C 1.39078 * 120.47154 * 359.72194 * 11 10 9 13 13 C 1.38667 * 118.36314 * 179.71218 * 12 11 10 14 14 Br 1.89101 * 120.39317 * 180.26152 * 13 12 11 15 15 C 1.38303 * 119.20682 * 0.60483 * 13 12 11 16 16 N 1.31870 * 120.86987 * 359.65492 * 15 13 12 17 17 C 1.31812 * 121.79252 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.64907 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47311 * 150.02491 * 18 17 16 20 20 Si 1.86304 * 109.47078 * 30.02194 * 18 17 16 21 21 H 1.48498 * 109.46905 * 60.00203 * 20 18 17 22 22 H 1.48497 * 109.47233 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47198 * 300.00143 * 20 18 17 24 24 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 38 38 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 39 39 H 1.07995 * 120.81745 * 0.02562 * 12 11 10 40 40 H 1.07991 * 119.56525 * 179.67753 * 15 13 12 41 41 H 1.09008 * 109.47136 * 270.02448 * 18 17 16 42 42 H 0.96697 * 114.00324 * 180.02562 * 19 18 17 43 43 H 1.08001 * 119.99624 * 180.02562 * 24 8 7 44 44 H 1.07999 * 120.00008 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9734 -3.4894 6.0518 12 6 5.2309 -4.0741 7.0721 13 6 5.9110 -4.6829 8.1160 14 35 4.9587 -5.5021 9.5295 15 6 7.2940 -4.6776 8.1147 16 7 7.9675 -4.1091 7.1337 17 6 7.3589 -3.5256 6.1205 18 6 8.1764 -2.8901 5.0256 19 8 7.4563 -2.9578 3.7931 20 14 9.7933 -3.7988 4.8508 21 1 9.5283 -5.2196 4.5097 22 1 10.5987 -3.1731 3.7714 23 1 10.5416 -3.7285 6.1316 24 6 3.1780 -0.8211 3.8164 25 6 2.7118 -0.1705 2.6894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5590 -2.3806 5.9006 38 1 3.5628 -3.9213 5.0094 39 1 4.1513 -4.0589 7.0494 40 1 7.8295 -5.1454 8.9274 41 1 8.3709 -1.8472 5.2760 42 1 7.9239 -2.5669 3.0424 43 1 3.3587 -0.2656 4.7248 44 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13445640_9276060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:21:36 Heat of formation + Delta-G solvation = -48.007400 kcal Electronic energy + Delta-G solvation = -25652.899268 eV Core-core repulsion = 21933.223313 eV Total energy + Delta-G solvation = -3719.675955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 395.047 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98062 -40.27960 -38.96505 -37.69589 -34.41745 -33.33893 -31.89094 -31.75147 -31.17310 -29.59889 -28.46197 -28.43453 -27.53376 -27.03836 -24.30540 -23.49116 -23.12550 -21.95427 -19.18227 -18.89453 -18.07060 -17.47494 -17.36353 -17.05776 -16.28762 -15.98601 -15.57025 -15.48265 -15.15985 -14.80738 -14.66524 -14.38630 -14.34314 -14.21560 -14.15003 -13.93822 -13.86931 -13.55044 -13.31217 -13.28156 -13.27858 -13.12226 -12.75016 -12.60983 -12.51710 -12.29983 -11.95392 -11.90842 -11.85549 -11.50109 -11.07325 -10.92515 -10.86186 -10.82461 -10.56769 -10.29334 -9.78270 -9.68788 -9.31848 -0.36706 0.04621 0.15534 0.37982 0.54511 1.24433 1.60013 1.68478 1.71512 1.82948 1.84468 2.11431 2.17404 2.44958 2.52461 2.80113 3.01656 3.38652 3.56652 3.68493 3.74487 3.77306 3.87667 4.03119 4.13482 4.18596 4.22490 4.41356 4.49665 4.56423 4.65582 4.68268 4.69683 4.73481 4.73806 4.74506 4.75246 4.75684 4.99290 5.11566 5.14484 5.38553 5.44283 5.48549 5.51690 5.61123 5.61612 6.08768 6.11616 6.61508 6.67476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.091 4.091 7 C -0.102 4.102 8 C -0.083 4.083 9 C 0.091 3.909 10 O -0.261 6.261 11 C 0.120 3.880 12 C -0.146 4.146 13 C -0.105 4.105 14 Br -0.024 7.024 15 C 0.097 3.903 16 N -0.438 5.438 17 C 0.120 3.880 18 C -0.070 4.070 19 O -0.530 6.530 20 Si 0.975 3.025 21 H -0.255 1.255 22 H -0.262 1.262 23 H -0.241 1.241 24 C -0.105 4.105 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.087 0.913 42 H 0.382 0.618 43 H 0.119 0.881 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 2.047 -1.981 3.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.016 3.984 10 O -0.172 6.172 11 C 0.070 3.930 12 C -0.174 4.174 13 C -0.187 4.187 14 Br 0.061 6.939 15 C -0.061 4.061 16 N -0.149 5.149 17 C -0.019 4.019 18 C -0.180 4.180 19 O -0.335 6.335 20 Si 0.796 3.204 21 H -0.178 1.178 22 H -0.186 1.186 23 H -0.164 1.164 24 C -0.124 4.124 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.169 0.831 40 H 0.190 0.810 41 H 0.104 0.896 42 H 0.229 0.771 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.664 1.070 -1.259 1.781 hybrid contribution -1.007 0.477 -0.128 1.121 sum -1.671 1.547 -1.387 2.666 Atomic orbital electron populations 1.26126 1.20476 1.04581 1.04499 0.78185 0.66826 0.66131 0.63743 1.26135 1.06499 1.18548 1.04556 1.26136 1.06508 1.08044 1.15050 1.27459 1.03079 0.99506 1.10131 1.21066 0.97517 0.94641 0.97705 1.21123 0.98446 0.99908 0.92511 1.19330 1.00718 0.94076 0.94213 1.21770 0.79206 1.00494 0.96964 1.86488 1.19836 1.71126 1.39731 1.19681 0.92422 0.93266 0.87653 1.21739 1.01426 1.00406 0.93822 1.22813 0.95981 1.03325 0.96535 1.96833 1.74305 1.79346 1.43395 1.22627 0.89204 0.97263 0.97007 1.67282 1.38896 1.07751 1.01014 1.20150 0.88569 0.98435 0.94762 1.24436 1.04356 1.04355 0.84901 1.86544 1.46574 1.83857 1.16514 0.85251 0.74152 0.79905 0.81135 1.17842 1.18618 1.16367 1.21116 0.98825 0.93511 0.98901 1.21057 0.97594 0.99704 0.92628 0.91177 0.91024 0.91170 0.91022 0.90954 0.91186 0.91173 0.90957 0.91010 0.85934 0.86173 0.91119 0.91009 0.83098 0.81001 0.89563 0.77061 0.86272 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.66 16 2 Si 1.06 -2.91 12.32 -169.99 -2.09 -5.01 16 3 C -0.45 0.91 8.54 101.05 0.86 1.77 16 4 C -0.45 0.89 8.53 101.05 0.86 1.76 16 5 C -0.36 0.16 4.59 -39.58 -0.18 -0.02 16 6 C -0.09 -0.01 9.29 -39.58 -0.37 -0.38 16 7 C -0.10 -0.09 9.70 -39.58 -0.38 -0.48 16 8 C -0.08 -0.09 5.51 -104.62 -0.58 -0.67 16 9 C 0.09 0.02 4.88 36.01 0.18 0.20 16 10 O -0.26 -0.62 7.86 -42.30 -0.33 -0.95 16 11 C 0.12 0.29 6.56 -39.08 -0.26 0.03 16 12 C -0.15 -0.17 8.90 -39.11 -0.35 -0.52 16 13 C -0.10 -0.14 6.24 -39.40 -0.25 -0.38 16 14 Br -0.02 -0.01 33.73 -68.01 -2.29 -2.31 16 15 C 0.10 0.16 10.94 -17.51 -0.19 -0.04 16 16 N -0.44 -1.33 8.37 -9.33 -0.08 -1.41 16 17 C 0.12 0.34 6.12 -82.41 -0.50 -0.16 16 18 C -0.07 -0.07 2.91 36.00 0.10 0.03 16 19 O -0.53 -0.52 10.61 -58.08 -0.62 -1.14 16 20 Si 0.98 1.10 27.17 -169.99 -4.62 -3.51 16 21 H -0.26 -0.80 7.11 56.52 0.40 -0.40 16 22 H -0.26 -0.15 7.11 56.52 0.40 0.26 16 23 H -0.24 -0.55 7.11 56.52 0.40 -0.15 16 24 C -0.11 -0.08 9.70 -39.58 -0.38 -0.46 16 25 C -0.09 0.00 9.29 -39.58 -0.37 -0.37 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.12 -0.21 7.43 -52.49 -0.39 -0.60 16 36 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 37 H 0.07 -0.08 7.63 -51.93 -0.40 -0.47 16 38 H 0.07 -0.06 7.65 -51.93 -0.40 -0.45 16 39 H 0.15 -0.11 6.45 -52.49 -0.34 -0.45 16 40 H 0.17 -0.10 8.06 -52.49 -0.42 -0.53 16 41 H 0.09 -0.06 7.96 -51.92 -0.41 -0.47 16 42 H 0.38 -1.23 8.74 45.56 0.40 -0.84 16 43 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 44 H 0.12 -0.22 7.44 -52.49 -0.39 -0.61 16 LS Contribution 390.34 15.07 5.88 5.88 Total: 0.00 -6.20 390.34 -10.76 -16.96 By element: Atomic # 1 Polarization: -4.82 SS G_CDS: -5.68 Total: -10.51 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.93 Total: 1.98 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Atomic # 8 Polarization: -1.14 SS G_CDS: -0.95 Total: -2.08 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: -6.71 Total: -8.52 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -2.29 Total: -2.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -6.20 -10.76 -16.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13445640_9276060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.046 kcal (2) G-P(sol) polarization free energy of solvation -6.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds