Wall clock time and date at job start Mon Mar 8 2021 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35906 * 116.99765 * 179.97438 * 10 9 8 12 12 C 1.39078 * 120.47154 * 359.72194 * 11 10 9 13 13 C 1.38667 * 118.36314 * 179.71218 * 12 11 10 14 14 Br 1.89101 * 120.39317 * 180.26152 * 13 12 11 15 15 C 1.38303 * 119.20682 * 0.60483 * 13 12 11 16 16 N 1.31870 * 120.86987 * 359.65492 * 15 13 12 17 17 C 1.31812 * 121.79252 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.64907 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.47311 * 150.02491 * 18 17 16 20 20 Si 1.86304 * 109.47078 * 30.02194 * 18 17 16 21 21 H 1.48498 * 109.46905 * 60.00203 * 20 18 17 22 22 H 1.48497 * 109.47233 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47198 * 300.00143 * 20 18 17 24 24 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 38 38 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 39 39 H 1.07995 * 120.81745 * 0.02562 * 12 11 10 40 40 H 1.07991 * 119.56525 * 179.67753 * 15 13 12 41 41 H 1.09008 * 109.47136 * 270.02448 * 18 17 16 42 42 H 0.96697 * 114.00324 * 180.02562 * 19 18 17 43 43 H 1.08001 * 119.99624 * 180.02562 * 24 8 7 44 44 H 1.07999 * 120.00008 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9734 -3.4894 6.0518 12 6 5.2309 -4.0741 7.0721 13 6 5.9110 -4.6829 8.1160 14 35 4.9587 -5.5021 9.5295 15 6 7.2940 -4.6776 8.1147 16 7 7.9675 -4.1091 7.1337 17 6 7.3589 -3.5256 6.1205 18 6 8.1764 -2.8901 5.0256 19 8 7.4563 -2.9578 3.7931 20 14 9.7933 -3.7988 4.8508 21 1 9.5283 -5.2196 4.5097 22 1 10.5987 -3.1731 3.7714 23 1 10.5416 -3.7285 6.1316 24 6 3.1780 -0.8211 3.8164 25 6 2.7118 -0.1705 2.6894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5590 -2.3806 5.9006 38 1 3.5628 -3.9213 5.0094 39 1 4.1513 -4.0589 7.0494 40 1 7.8295 -5.1454 8.9274 41 1 8.3709 -1.8472 5.2760 42 1 7.9239 -2.5669 3.0424 43 1 3.3587 -0.2656 4.7248 44 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13445640_9276060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:21:35 Heat of formation + Delta-G solvation = -37.806106 kcal Electronic energy + Delta-G solvation = -25652.456907 eV Core-core repulsion = 21933.223313 eV Total energy + Delta-G solvation = -3719.233594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 395.047 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.06160 -40.27384 -39.00984 -37.73143 -34.50037 -33.33689 -31.85233 -31.81176 -31.24155 -29.42606 -28.27664 -28.25868 -27.52604 -27.10861 -24.37263 -23.45792 -23.20105 -21.94423 -19.25103 -18.95806 -18.09545 -17.53276 -17.36024 -17.07988 -16.34933 -15.95514 -15.61309 -15.54308 -15.21676 -14.87954 -14.65047 -14.43126 -14.30126 -14.06788 -14.03147 -13.85672 -13.71820 -13.51362 -13.28098 -13.12838 -13.09938 -12.95250 -12.81893 -12.63488 -12.49872 -12.36851 -12.11660 -11.96529 -11.84844 -11.56359 -10.97394 -10.87494 -10.75478 -10.74158 -10.63918 -10.35294 -9.77224 -9.65351 -9.40171 -0.46742 -0.05109 0.17894 0.29874 0.55591 1.16405 1.49004 1.58596 1.85335 1.93254 2.01316 2.04346 2.23253 2.35177 2.68442 2.77896 3.03256 3.33031 3.53160 3.65362 3.74588 3.79375 3.88301 4.03425 4.13668 4.23657 4.25314 4.38122 4.50938 4.56167 4.69495 4.73581 4.85925 4.86048 4.90117 4.91037 4.91433 4.92069 5.02911 5.05295 5.18686 5.42635 5.59381 5.60640 5.63019 5.69128 5.72720 6.04360 6.15200 6.54817 6.81939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.127 2.873 3 C -0.462 4.462 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.096 4.096 9 C 0.088 3.912 10 O -0.272 6.272 11 C 0.110 3.890 12 C -0.143 4.143 13 C -0.109 4.109 14 Br -0.016 7.016 15 C 0.091 3.909 16 N -0.457 5.457 17 C 0.101 3.899 18 C -0.067 4.067 19 O -0.544 6.544 20 Si 1.006 2.994 21 H -0.288 1.288 22 H -0.249 1.249 23 H -0.259 1.259 24 C -0.119 4.119 25 C -0.103 4.103 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.167 0.833 40 H 0.189 0.811 41 H 0.104 0.896 42 H 0.398 0.602 43 H 0.126 0.874 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 2.692 -2.347 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.569 4.569 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.120 4.120 7 C -0.136 4.136 8 C -0.096 4.096 9 C 0.014 3.986 10 O -0.183 6.183 11 C 0.060 3.940 12 C -0.171 4.171 13 C -0.191 4.191 14 Br 0.069 6.931 15 C -0.067 4.067 16 N -0.168 5.168 17 C -0.038 4.038 18 C -0.177 4.177 19 O -0.352 6.352 20 Si 0.830 3.170 21 H -0.214 1.214 22 H -0.173 1.173 23 H -0.183 1.183 24 C -0.137 4.137 25 C -0.121 4.121 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.185 0.815 40 H 0.206 0.794 41 H 0.121 0.879 42 H 0.249 0.751 43 H 0.144 0.856 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.173 1.729 -1.635 2.653 hybrid contribution -0.873 0.244 -0.010 0.907 sum -2.046 1.973 -1.645 3.284 Atomic orbital electron populations 1.26290 1.21634 1.04446 1.04564 0.77169 0.65142 0.64640 0.61672 1.26275 1.06432 1.19360 1.04847 1.26287 1.06434 1.08458 1.15800 1.28010 1.02464 0.99531 1.11091 1.21354 0.97398 0.95197 0.98095 1.21318 0.98987 1.00309 0.92969 1.19480 1.01139 0.94431 0.94582 1.21886 0.78362 1.01100 0.97274 1.86463 1.20822 1.71208 1.39838 1.19756 0.92501 0.93723 0.88055 1.21936 1.02228 0.99653 0.93312 1.22882 0.96018 1.03370 0.96799 1.96834 1.74076 1.79220 1.43018 1.22959 0.89637 0.96985 0.97138 1.67312 1.39477 1.08445 1.01574 1.20489 0.89259 0.98800 0.95264 1.24418 1.03567 1.05062 0.84678 1.86511 1.47274 1.84264 1.17136 0.84832 0.74140 0.77805 0.80252 1.21360 1.17285 1.18344 1.21335 0.99144 0.93642 0.99615 1.21365 0.97389 1.00684 0.92616 0.91371 0.90716 0.91424 0.91282 0.90699 0.90910 0.90984 0.90699 0.91289 0.84478 0.85877 0.89933 0.90257 0.81518 0.79421 0.87886 0.75145 0.85568 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.85 8.65 113.37 0.98 2.83 16 2 Si 1.13 -6.90 12.32 68.60 0.85 -6.06 16 3 C -0.46 2.19 8.54 113.37 0.97 3.16 16 4 C -0.46 2.10 8.53 113.37 0.97 3.07 16 5 C -0.37 0.42 4.59 22.27 0.10 0.52 16 6 C -0.10 -0.04 9.29 22.27 0.21 0.17 16 7 C -0.12 -0.28 9.70 22.27 0.22 -0.06 16 8 C -0.10 -0.25 5.51 -19.86 -0.11 -0.36 16 9 C 0.09 0.08 4.88 71.24 0.35 0.43 16 10 O -0.27 -1.42 7.86 -70.64 -0.55 -1.97 16 11 C 0.11 0.59 6.56 22.60 0.15 0.74 16 12 C -0.14 -0.37 8.90 22.57 0.20 -0.16 16 13 C -0.11 -0.31 6.24 22.39 0.14 -0.17 16 14 Br -0.02 -0.02 33.73 -20.37 -0.69 -0.70 16 15 C 0.09 0.34 10.94 84.70 0.93 1.27 16 16 N -0.46 -3.18 8.37 -183.44 -1.54 -4.71 16 17 C 0.10 0.65 6.12 42.69 0.26 0.92 16 18 C -0.07 -0.16 2.91 71.24 0.21 0.05 16 19 O -0.54 -1.25 10.61 -127.13 -1.35 -2.60 16 20 Si 1.01 3.05 27.17 68.60 1.86 4.91 16 21 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 22 H -0.25 -0.15 7.11 99.48 0.71 0.55 16 23 H -0.26 -1.50 7.11 99.48 0.71 -0.80 16 24 C -0.12 -0.21 9.70 22.27 0.22 0.01 16 25 C -0.10 0.00 9.29 22.27 0.21 0.21 16 26 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 27 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 28 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 29 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 30 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 31 H 0.07 -0.37 7.69 -2.39 -0.02 -0.39 16 32 H 0.07 -0.35 7.69 -2.38 -0.02 -0.36 16 33 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 34 H 0.07 -0.26 7.96 -2.39 -0.02 -0.27 16 35 H 0.14 -0.49 7.43 -2.91 -0.02 -0.51 16 36 H 0.12 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.08 -0.17 7.63 -2.39 -0.02 -0.19 16 38 H 0.08 -0.10 7.65 -2.39 -0.02 -0.12 16 39 H 0.17 -0.27 6.45 -2.91 -0.02 -0.29 16 40 H 0.19 -0.16 8.06 -2.92 -0.02 -0.18 16 41 H 0.10 -0.15 7.96 -2.38 -0.02 -0.17 16 42 H 0.40 -2.59 8.74 -74.06 -0.65 -3.23 16 43 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 44 H 0.14 -0.58 7.44 -2.91 -0.02 -0.60 16 Total: 0.00 -14.42 390.34 5.69 -8.73 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: 1.12 Total: -10.22 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.99 Total: 12.62 kcal Atomic # 7 Polarization: -3.18 SS G_CDS: -1.54 Total: -4.71 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: -1.90 Total: -4.57 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: 2.71 Total: -1.15 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.70 kcal Total: -14.42 5.69 -8.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13445640_9276060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.073 kcal (2) G-P(sol) polarization free energy of solvation -14.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds