Wall clock time and date at job start Mon Mar 8 2021 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47229 * 2 1 4 4 C 1.86308 * 109.47180 * 240.00003 * 2 1 3 5 5 C 1.86295 * 109.47125 * 120.00039 * 2 1 3 6 6 C 1.53002 * 109.47235 * 59.99877 * 5 2 1 7 7 S 1.81404 * 109.47130 * 180.02562 * 6 5 2 8 8 C 1.81399 * 102.99905 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47173 * 179.97438 * 8 7 6 10 10 C 1.33395 * 122.53872 * 270.25717 * 9 8 7 11 11 S 1.75886 * 109.59043 * 180.24116 * 10 9 8 12 12 C 1.75885 * 90.97065 * 359.73076 * 11 10 9 13 13 C 1.50702 * 125.19995 * 179.97438 * 12 11 10 14 14 O 1.42900 * 109.47305 * 120.02010 * 13 12 11 15 15 Si 1.86301 * 109.47375 * 0.02562 * 13 12 11 16 16 H 1.48501 * 109.47068 * 60.00389 * 15 13 12 17 17 H 1.48501 * 109.47140 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46965 * 299.99955 * 15 13 12 19 19 C 1.33388 * 109.59458 * 359.97438 * 12 11 10 20 20 H 1.09000 * 109.46992 * 300.00162 * 1 2 3 21 21 H 1.09004 * 109.47114 * 60.00230 * 1 2 3 22 22 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47111 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46885 * 299.99911 * 3 2 1 25 25 H 1.09000 * 109.47266 * 60.00005 * 3 2 1 26 26 H 1.08999 * 109.47119 * 299.99785 * 4 2 1 27 27 H 1.08994 * 109.46857 * 60.00187 * 4 2 1 28 28 H 1.09000 * 109.46642 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47021 * 299.99781 * 5 2 1 30 30 H 1.09003 * 109.47420 * 179.97438 * 5 2 1 31 31 H 1.08995 * 109.46786 * 60.00223 * 6 5 2 32 32 H 1.08995 * 109.47115 * 300.00330 * 6 5 2 33 33 H 1.09000 * 109.47201 * 59.99983 * 8 7 6 34 34 H 1.08991 * 109.47039 * 300.00057 * 8 7 6 35 35 H 1.07998 * 125.20353 * 359.97100 * 10 9 8 36 36 H 1.09002 * 109.46625 * 240.01886 * 13 12 11 37 37 H 0.96699 * 113.99978 * 300.00272 * 14 13 12 38 38 H 1.08002 * 122.53671 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9739 -2.3207 1.5211 7 16 2.5780 -3.1756 3.0027 8 6 1.8815 -4.8411 2.8252 9 6 2.3007 -5.6886 3.9987 10 6 3.4212 -6.4123 3.9972 11 16 3.5717 -7.2695 5.5257 12 6 2.0639 -6.5698 6.1007 13 6 1.4422 -6.8332 7.4481 14 8 1.3240 -5.6037 8.1667 15 14 2.5179 -8.0127 8.4085 16 1 3.8650 -7.4156 8.5933 17 1 1.9049 -8.2726 9.7359 18 1 2.6408 -9.2904 7.6619 19 6 1.5550 -5.7705 5.1620 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.5741 1.7564 -0.0005 24 1 2.1207 2.2703 -0.8900 25 1 2.1207 2.2703 0.8900 26 1 2.1207 -1.9059 -1.5212 27 1 2.1207 -0.3644 -2.4111 28 1 3.5740 -0.8778 -1.5213 29 1 2.1206 -0.3644 2.4111 30 1 3.5740 -0.8786 1.5209 31 1 2.3373 -2.8345 0.6312 32 1 0.8840 -2.3207 1.5211 33 1 2.2479 -5.2918 1.9028 34 1 0.7939 -4.7785 2.7919 35 1 4.1258 -6.4673 3.1805 36 1 0.4534 -7.2713 7.3124 37 1 2.1673 -5.1573 8.3239 38 1 0.6283 -5.2325 5.2971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13465986_18345020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:18 Heat of formation + Delta-G solvation = -60.522056 kcal Electronic energy + Delta-G solvation = -16074.357151 eV Core-core repulsion = 13485.509921 eV Total energy + Delta-G solvation = -2588.847231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.070 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62188 -37.64209 -33.66748 -32.51186 -29.53581 -29.12554 -28.48918 -28.47788 -26.99264 -24.18184 -22.67306 -20.17996 -18.64801 -17.75008 -17.15130 -16.39547 -16.11445 -15.87774 -15.67357 -15.51065 -14.50824 -14.40399 -14.31399 -14.14532 -14.02041 -13.95435 -13.67393 -13.40496 -13.34151 -13.25534 -13.23971 -13.15212 -12.99592 -12.47302 -12.34495 -12.32558 -12.10440 -11.53206 -11.16186 -10.90188 -10.86662 -10.56257 -10.45180 -9.68789 -9.33335 -8.55131 -0.16818 0.48992 0.60726 0.77592 1.12413 1.37672 1.49271 1.51197 1.78474 1.81031 1.87325 1.91933 1.99003 2.58336 3.36435 3.64931 3.86780 3.98104 3.99644 4.03823 4.24672 4.47588 4.49593 4.54458 4.65180 4.65821 4.67428 4.70091 4.70861 4.71448 4.71792 4.83522 5.06528 5.24539 5.29992 5.42190 5.42746 5.49008 5.49909 6.47195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.020 2.980 3 C -0.451 4.451 4 C -0.452 4.452 5 C -0.400 4.400 6 C -0.073 4.073 7 S -0.255 6.255 8 C -0.030 4.030 9 C -0.092 4.092 10 C -0.181 4.181 11 S 0.095 5.905 12 C -0.221 4.221 13 C -0.037 4.037 14 O -0.533 6.533 15 Si 0.896 3.104 16 H -0.235 1.235 17 H -0.228 1.228 18 H -0.234 1.234 19 C -0.087 4.087 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.379 0.621 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 -0.124 -2.139 2.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.215 2.785 3 C -0.558 4.558 4 C -0.559 4.559 5 C -0.485 4.485 6 C -0.221 4.221 7 S -0.027 6.027 8 C -0.179 4.179 9 C -0.106 4.106 10 C -0.320 4.320 11 S 0.359 5.641 12 C -0.338 4.338 13 C -0.151 4.151 14 O -0.338 6.338 15 Si 0.716 3.284 16 H -0.158 1.158 17 H -0.151 1.151 18 H -0.157 1.157 19 C -0.118 4.118 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.186 0.814 36 H 0.143 0.857 37 H 0.226 0.774 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.327 -1.473 -0.243 1.998 hybrid contribution -1.384 0.877 -1.937 2.537 sum -0.058 -0.597 -2.180 2.261 Atomic orbital electron populations 1.26169 1.20788 1.04382 1.04578 0.79101 0.66952 0.66794 0.65670 1.26119 1.06348 1.18811 1.04558 1.26169 1.06373 1.07947 1.15418 1.26109 1.06664 0.99104 1.16598 1.23071 1.03197 0.98332 0.97544 1.87361 1.70943 1.09669 1.34757 1.21977 1.03319 0.94166 0.98486 1.18254 0.96012 1.00163 0.96159 1.25559 1.01777 1.02975 1.01664 1.84423 1.21769 1.47634 1.10230 1.24814 1.00155 1.06599 1.02203 1.24333 1.07093 0.94008 0.89634 1.86530 1.35653 1.36080 1.75567 0.86249 0.79942 0.79759 0.82445 1.15777 1.15081 1.15724 1.19917 1.01446 0.99049 0.91406 0.91124 0.91158 0.91366 0.91177 0.91118 0.91154 0.91375 0.91153 0.91159 0.89628 0.89680 0.90019 0.89973 0.89202 0.89019 0.81412 0.85695 0.77402 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.90 8.65 101.05 0.87 1.77 16 2 Si 1.02 -3.20 12.19 -169.99 -2.07 -5.28 16 3 C -0.45 0.78 8.65 101.05 0.87 1.65 16 4 C -0.45 0.92 8.65 101.05 0.87 1.80 16 5 C -0.40 0.61 4.46 37.16 0.17 0.77 16 6 C -0.07 0.07 5.31 37.16 0.20 0.27 16 7 S -0.26 -0.40 21.72 -107.50 -2.33 -2.73 16 8 C -0.03 0.00 6.19 36.00 0.22 0.22 16 9 C -0.09 -0.09 5.06 -106.25 -0.54 -0.63 16 10 C -0.18 -0.13 10.98 29.04 0.32 0.19 16 11 S 0.09 0.09 20.58 -107.50 -2.21 -2.13 16 12 C -0.22 -0.19 5.72 -36.00 -0.21 -0.40 16 13 C -0.04 0.00 2.96 36.01 0.11 0.11 16 14 O -0.53 -0.33 12.86 -35.23 -0.45 -0.79 16 15 Si 0.90 -0.14 26.25 -169.99 -4.46 -4.60 16 16 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 17 H -0.23 -0.15 7.11 56.52 0.40 0.25 16 18 H -0.23 -0.10 7.11 56.52 0.40 0.31 16 19 C -0.09 -0.10 9.82 -41.21 -0.40 -0.51 16 20 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 21 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 22 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.08 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.08 -0.09 7.96 -51.93 -0.41 -0.50 16 31 H 0.08 -0.16 7.79 -51.93 -0.40 -0.56 16 32 H 0.08 -0.15 7.79 -51.93 -0.40 -0.55 16 33 H 0.09 -0.10 8.12 -51.92 -0.42 -0.52 16 34 H 0.09 -0.08 8.13 -51.93 -0.42 -0.50 16 35 H 0.17 -0.15 8.06 -52.49 -0.42 -0.57 16 36 H 0.13 -0.15 7.96 -51.93 -0.41 -0.56 16 37 H 0.38 -0.84 8.70 45.56 0.40 -0.45 16 38 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 LS Contribution 343.25 15.07 5.17 5.17 Total: 0.00 -4.34 343.25 -9.72 -14.06 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -5.84 Total: -8.95 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 2.49 Total: 5.24 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -0.45 Total: -0.79 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: -6.53 Total: -9.88 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -4.55 Total: -4.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -4.34 -9.72 -14.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13465986_18345020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.461 kcal (2) G-P(sol) polarization free energy of solvation -4.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds