Wall clock time and date at job start Mon Mar 8 2021 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 109.47229 * 2 1 4 4 C 1.86308 * 109.47180 * 240.00003 * 2 1 3 5 5 C 1.86295 * 109.47125 * 120.00039 * 2 1 3 6 6 C 1.53002 * 109.47235 * 59.99877 * 5 2 1 7 7 S 1.81404 * 109.47130 * 180.02562 * 6 5 2 8 8 C 1.81399 * 102.99905 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47173 * 179.97438 * 8 7 6 10 10 C 1.33395 * 122.53872 * 270.25717 * 9 8 7 11 11 S 1.75886 * 109.59043 * 180.24116 * 10 9 8 12 12 C 1.75885 * 90.97065 * 359.73076 * 11 10 9 13 13 C 1.50702 * 125.19995 * 179.97438 * 12 11 10 14 14 O 1.42900 * 109.47305 * 120.02010 * 13 12 11 15 15 Si 1.86301 * 109.47375 * 0.02562 * 13 12 11 16 16 H 1.48501 * 109.47068 * 60.00389 * 15 13 12 17 17 H 1.48501 * 109.47140 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46965 * 299.99955 * 15 13 12 19 19 C 1.33388 * 109.59458 * 359.97438 * 12 11 10 20 20 H 1.09000 * 109.46992 * 300.00162 * 1 2 3 21 21 H 1.09004 * 109.47114 * 60.00230 * 1 2 3 22 22 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47111 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46885 * 299.99911 * 3 2 1 25 25 H 1.09000 * 109.47266 * 60.00005 * 3 2 1 26 26 H 1.08999 * 109.47119 * 299.99785 * 4 2 1 27 27 H 1.08994 * 109.46857 * 60.00187 * 4 2 1 28 28 H 1.09000 * 109.46642 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47021 * 299.99781 * 5 2 1 30 30 H 1.09003 * 109.47420 * 179.97438 * 5 2 1 31 31 H 1.08995 * 109.46786 * 60.00223 * 6 5 2 32 32 H 1.08995 * 109.47115 * 300.00330 * 6 5 2 33 33 H 1.09000 * 109.47201 * 59.99983 * 8 7 6 34 34 H 1.08991 * 109.47039 * 300.00057 * 8 7 6 35 35 H 1.07998 * 125.20353 * 359.97100 * 10 9 8 36 36 H 1.09002 * 109.46625 * 240.01886 * 13 12 11 37 37 H 0.96699 * 113.99978 * 300.00272 * 14 13 12 38 38 H 1.08002 * 122.53671 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9739 -2.3207 1.5211 7 16 2.5780 -3.1756 3.0027 8 6 1.8815 -4.8411 2.8252 9 6 2.3007 -5.6886 3.9987 10 6 3.4212 -6.4123 3.9972 11 16 3.5717 -7.2695 5.5257 12 6 2.0639 -6.5698 6.1007 13 6 1.4422 -6.8332 7.4481 14 8 1.3240 -5.6037 8.1667 15 14 2.5179 -8.0127 8.4085 16 1 3.8650 -7.4156 8.5933 17 1 1.9049 -8.2726 9.7359 18 1 2.6408 -9.2904 7.6619 19 6 1.5550 -5.7705 5.1620 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.5741 1.7564 -0.0005 24 1 2.1207 2.2703 -0.8900 25 1 2.1207 2.2703 0.8900 26 1 2.1207 -1.9059 -1.5212 27 1 2.1207 -0.3644 -2.4111 28 1 3.5740 -0.8778 -1.5213 29 1 2.1206 -0.3644 2.4111 30 1 3.5740 -0.8786 1.5209 31 1 2.3373 -2.8345 0.6312 32 1 0.8840 -2.3207 1.5211 33 1 2.2479 -5.2918 1.9028 34 1 0.7939 -4.7785 2.7919 35 1 4.1258 -6.4673 3.1805 36 1 0.4534 -7.2713 7.3124 37 1 2.1673 -5.1573 8.3239 38 1 0.6283 -5.2325 5.2971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13465986_18345020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:17 Heat of formation + Delta-G solvation = -50.426981 kcal Electronic energy + Delta-G solvation = -16073.919396 eV Core-core repulsion = 13485.509921 eV Total energy + Delta-G solvation = -2588.409475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 290.070 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64797 -37.65611 -33.55740 -32.53099 -29.36736 -29.11655 -28.30817 -28.29544 -27.01233 -24.09868 -22.67805 -20.20855 -18.67725 -17.77541 -17.19231 -16.39658 -16.11678 -15.79637 -15.62753 -15.52024 -14.48814 -14.39806 -14.19248 -14.01614 -13.86635 -13.81338 -13.65021 -13.31028 -13.28942 -13.13892 -13.10825 -12.98624 -12.94243 -12.48768 -12.37476 -12.22973 -12.12525 -11.57025 -11.13831 -10.73466 -10.68754 -10.56976 -10.36871 -9.72834 -9.38483 -8.63309 -0.20413 0.45573 0.61187 0.74244 1.11866 1.36994 1.49901 1.53721 1.85197 1.97325 1.98290 2.03840 2.09221 2.74397 3.40565 3.67470 3.87890 4.03309 4.11202 4.14490 4.24473 4.51473 4.53861 4.65029 4.66447 4.82081 4.83002 4.86488 4.87509 4.88249 4.89164 4.94924 5.02215 5.27096 5.37168 5.38930 5.58908 5.66581 5.68182 6.58912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.101 2.899 3 C -0.470 4.470 4 C -0.466 4.466 5 C -0.411 4.411 6 C -0.067 4.067 7 S -0.313 6.313 8 C -0.018 4.018 9 C -0.100 4.100 10 C -0.184 4.184 11 S 0.083 5.917 12 C -0.222 4.222 13 C -0.035 4.035 14 O -0.546 6.546 15 Si 0.922 3.078 16 H -0.242 1.242 17 H -0.240 1.240 18 H -0.242 1.242 19 C -0.096 4.096 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.181 0.819 36 H 0.136 0.864 37 H 0.389 0.611 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -0.178 -2.864 2.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.573 4.573 2 Si 1.291 2.709 3 C -0.576 4.576 4 C -0.572 4.572 5 C -0.494 4.494 6 C -0.214 4.214 7 S -0.086 6.086 8 C -0.168 4.168 9 C -0.114 4.114 10 C -0.322 4.322 11 S 0.347 5.653 12 C -0.339 4.339 13 C -0.148 4.148 14 O -0.353 6.353 15 Si 0.743 3.257 16 H -0.166 1.166 17 H -0.163 1.163 18 H -0.165 1.165 19 C -0.127 4.127 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.199 0.801 36 H 0.153 0.847 37 H 0.238 0.762 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.964 -1.519 -0.962 2.040 hybrid contribution -1.255 0.921 -1.708 2.311 sum -0.291 -0.598 -2.670 2.752 Atomic orbital electron populations 1.26346 1.21961 1.04566 1.04422 0.77857 0.65102 0.64519 0.63463 1.26360 1.06383 1.20442 1.04421 1.26337 1.06373 1.08434 1.16088 1.26344 1.06435 0.99097 1.17534 1.23185 1.03813 0.98145 0.96304 1.87546 1.71940 1.11821 1.37261 1.21967 1.03667 0.92621 0.98536 1.18414 0.96114 1.00324 0.96504 1.25756 1.01976 1.02725 1.01790 1.84438 1.22076 1.47964 1.10786 1.24936 0.99992 1.06475 1.02529 1.24382 1.07622 0.93763 0.89076 1.86499 1.36798 1.36414 1.75602 0.85886 0.79254 0.79112 0.81430 1.16554 1.16322 1.16545 1.20037 1.01713 0.99266 0.91703 0.91407 0.91211 0.91031 0.91399 0.91141 0.91421 0.91008 0.91212 0.91369 0.90303 0.90252 0.88743 0.88849 0.87977 0.88151 0.80132 0.84679 0.76179 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.19 8.65 113.37 0.98 3.17 16 2 Si 1.10 -7.56 12.19 68.60 0.84 -6.72 16 3 C -0.47 1.64 8.65 113.37 0.98 2.62 16 4 C -0.47 2.28 8.65 113.37 0.98 3.26 16 5 C -0.41 1.30 4.46 71.98 0.32 1.62 16 6 C -0.07 0.16 5.31 71.98 0.38 0.54 16 7 S -0.31 -1.06 21.72 -56.49 -1.23 -2.29 16 8 C -0.02 0.01 6.19 71.23 0.44 0.45 16 9 C -0.10 -0.20 5.06 -20.92 -0.11 -0.31 16 10 C -0.18 -0.27 10.98 66.72 0.73 0.47 16 11 S 0.08 0.18 20.58 -56.49 -1.16 -0.98 16 12 C -0.22 -0.45 5.72 24.59 0.14 -0.30 16 13 C -0.04 0.00 2.96 71.24 0.21 0.22 16 14 O -0.55 -0.76 12.86 -148.98 -1.92 -2.68 16 15 Si 0.92 0.05 26.25 68.60 1.80 1.85 16 16 H -0.24 -0.25 7.11 99.48 0.71 0.45 16 17 H -0.24 -0.43 7.11 99.48 0.71 0.27 16 18 H -0.24 -0.29 7.11 99.48 0.71 0.42 16 19 C -0.10 -0.25 9.82 21.22 0.21 -0.04 16 20 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 21 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 22 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 23 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 24 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 25 H 0.07 -0.20 7.96 -2.39 -0.02 -0.21 16 26 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.08 -0.13 7.96 -2.39 -0.02 -0.15 16 30 H 0.08 -0.15 7.96 -2.39 -0.02 -0.16 16 31 H 0.09 -0.47 7.79 -2.39 -0.02 -0.48 16 32 H 0.09 -0.43 7.79 -2.39 -0.02 -0.45 16 33 H 0.10 -0.31 8.12 -2.39 -0.02 -0.33 16 34 H 0.10 -0.24 8.13 -2.39 -0.02 -0.25 16 35 H 0.18 -0.36 8.06 -2.91 -0.02 -0.38 16 36 H 0.14 -0.34 7.96 -2.39 -0.02 -0.35 16 37 H 0.39 -1.60 8.70 -74.06 -0.64 -2.24 16 38 H 0.15 0.27 8.06 -2.91 -0.02 0.24 16 Total: 0.00 -10.00 343.25 4.73 -5.27 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: 1.13 Total: -6.14 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.27 Total: 11.69 kcal Atomic # 8 Polarization: -0.76 SS G_CDS: -1.92 Total: -2.68 kcal Atomic # 14 Polarization: -7.51 SS G_CDS: 2.64 Total: -4.87 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.39 Total: -3.27 kcal Total: -10.00 4.73 -5.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13465986_18345020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.161 kcal (2) G-P(sol) polarization free energy of solvation -9.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds