Wall clock time and date at job start Mon Mar 8 2021 13:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86311 * 109.46941 * 2 1 4 4 C 1.50695 * 109.47516 * 240.00269 * 2 1 3 5 5 C 1.35979 * 119.53509 * 104.99386 * 4 2 1 6 6 C 1.40596 * 119.73336 * 180.02562 * 5 4 2 7 7 C 1.40495 * 121.22631 * 179.97438 * 6 5 4 8 8 C 1.36138 * 119.66718 * 180.02562 * 7 6 5 9 9 C 1.39332 * 121.00062 * 359.97438 * 8 7 6 10 10 C 1.36124 * 120.97427 * 0.02562 * 9 8 7 11 11 C 1.40538 * 119.66136 * 359.97438 * 10 9 8 12 12 C 1.40468 * 121.23378 * 179.97438 * 11 10 9 13 13 C 1.36571 * 119.61736 * 180.02562 * 12 11 10 14 14 O 1.35879 * 119.56357 * 180.02562 * 13 12 11 15 15 C 1.42898 * 117.00287 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47589 * 180.02562 * 15 14 13 17 17 H 1.09000 * 112.84907 * 45.32649 * 16 15 14 18 18 C 1.53773 * 113.61936 * 176.52769 * 16 15 14 19 19 C 1.53778 * 87.08345 * 139.98152 * 18 16 15 20 20 H 1.08991 * 113.61311 * 89.20173 * 19 18 16 21 21 O 1.42902 * 113.60986 * 220.02094 * 19 18 16 22 22 C 1.53778 * 113.61369 * 274.13660 * 16 15 14 23 23 H 0.96699 * 114.00077 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47298 * 119.99820 * 2 1 3 25 25 H 1.48501 * 109.99928 * 58.68034 * 3 2 1 26 26 H 1.48498 * 109.99498 * 179.97438 * 3 2 1 27 27 H 1.08004 * 120.13406 * 0.02562 * 5 4 2 28 28 H 1.07997 * 120.16509 * 359.75713 * 7 6 5 29 29 H 1.07997 * 119.49639 * 180.02562 * 8 7 6 30 30 H 1.08000 * 119.51236 * 179.97438 * 9 8 7 31 31 H 1.08005 * 120.16929 * 179.97438 * 10 9 8 32 32 H 1.07996 * 120.18761 * 0.02727 * 12 11 10 33 33 H 1.09003 * 109.46902 * 299.99591 * 15 14 13 34 34 H 1.08998 * 109.47212 * 59.99851 * 15 14 13 35 35 H 1.09000 * 113.61391 * 254.53446 * 18 16 15 36 36 H 1.09005 * 113.61074 * 25.34368 * 18 16 15 37 37 H 0.96701 * 113.99834 * 179.97438 * 21 19 18 38 38 H 1.09005 * 113.61333 * 334.56557 * 22 16 15 39 39 H 1.09006 * 113.61465 * 105.46710 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.4434 0.0145 -2.2607 6 6 2.9129 -0.6439 -3.4109 7 6 3.4475 0.0739 -4.4939 8 6 3.8924 -0.5960 -5.5924 9 6 3.8267 -1.9861 -5.6606 10 6 3.3152 -2.7147 -4.6308 11 6 2.8460 -2.0583 -3.4801 12 6 2.3113 -2.7773 -2.3984 13 6 1.8644 -2.1057 -1.2964 14 8 1.3479 -2.8024 -0.2504 15 6 1.3052 -4.2252 -0.3763 16 6 0.6959 -4.8313 0.8895 17 1 -0.2003 -4.3067 1.2209 18 6 0.5263 -6.3581 0.8215 19 6 0.9847 -6.3956 2.2889 20 1 0.1678 -6.3003 3.0041 21 8 1.8596 -7.4853 2.5875 22 6 1.7194 -5.0713 2.0118 23 1 -0.3933 -0.8834 -0.0004 24 1 1.7923 -0.5138 0.8900 25 1 1.5353 2.4772 1.1921 26 1 3.5349 1.7702 0.0006 27 1 2.4894 1.0916 -2.1958 28 1 3.5012 1.1519 -4.4569 29 1 4.3032 -0.0416 -6.4231 30 1 4.1862 -2.4930 -6.5439 31 1 3.2702 -3.7917 -4.6977 32 1 2.2540 -3.8551 -2.4379 33 1 0.6949 -4.4955 -1.2381 34 1 2.3164 -4.6084 -0.5126 35 1 -0.5062 -6.6768 0.6784 36 1 1.2184 -6.8441 0.1338 37 1 2.1517 -7.5140 3.5089 38 1 2.7394 -5.2050 1.6513 39 1 1.6488 -4.3526 2.8283 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13906094_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:26:24 Heat of formation + Delta-G solvation = -51.018380 kcal Electronic energy + Delta-G solvation = -22388.374377 eV Core-core repulsion = 19035.336299 eV Total energy + Delta-G solvation = -3353.038078 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92924 -40.67075 -39.61104 -38.05365 -36.41602 -35.96104 -33.66385 -31.71250 -30.19629 -29.17773 -26.88438 -26.75052 -24.60808 -23.53022 -22.92280 -22.59648 -20.73669 -19.39509 -18.73613 -18.56701 -18.05799 -17.39400 -17.11892 -16.47597 -16.24298 -16.16096 -15.71067 -15.45462 -15.33674 -14.87766 -14.53513 -14.25846 -14.17099 -13.90877 -13.83283 -13.59839 -13.38491 -12.90882 -12.74763 -12.47342 -12.31532 -12.15462 -11.98758 -11.87083 -11.56577 -11.33588 -11.19393 -11.03469 -10.87976 -10.83643 -9.28768 -8.74818 -4.87006 -0.49320 0.02946 1.05006 1.42695 1.66306 1.94010 1.96737 2.03459 3.10324 3.11616 3.31313 3.40841 3.51087 3.58583 3.65878 3.77374 3.90435 3.92004 4.00041 4.03442 4.08611 4.10283 4.17409 4.27324 4.28657 4.38157 4.48523 4.52251 4.60180 4.62681 4.63920 4.81471 4.84733 4.96426 4.99014 5.02124 5.19958 5.21952 5.29872 5.57151 5.59001 5.63901 5.96957 6.29559 6.59732 6.61722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.073 4.073 3 Si 0.740 3.260 4 C -0.128 4.128 5 C -0.056 4.056 6 C -0.079 4.079 7 C -0.092 4.092 8 C -0.127 4.127 9 C -0.101 4.101 10 C -0.120 4.120 11 C -0.011 4.011 12 C -0.209 4.209 13 C 0.146 3.854 14 O -0.314 6.314 15 C 0.071 3.929 16 C -0.109 4.109 17 H 0.106 0.894 18 C -0.120 4.120 19 C 0.076 3.924 20 H 0.085 0.915 21 O -0.560 6.560 22 C -0.164 4.164 23 H 0.366 0.634 24 H 0.075 0.925 25 H -0.254 1.254 26 H -0.250 1.250 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.381 0.619 38 H 0.090 0.910 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -0.670 -1.117 1.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.181 4.181 3 Si 0.638 3.362 4 C -0.129 4.129 5 C -0.074 4.074 6 C -0.079 4.079 7 C -0.110 4.110 8 C -0.145 4.145 9 C -0.119 4.119 10 C -0.138 4.138 11 C -0.011 4.011 12 C -0.228 4.228 13 C 0.101 3.899 14 O -0.228 6.228 15 C -0.004 4.004 16 C -0.127 4.127 17 H 0.124 0.876 18 C -0.157 4.157 19 C 0.017 3.983 20 H 0.103 0.897 21 O -0.366 6.366 22 C -0.202 4.202 23 H 0.214 0.786 24 H 0.092 0.908 25 H -0.179 1.179 26 H -0.175 1.175 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.366 0.497 -1.123 1.281 hybrid contribution 0.127 -1.836 1.009 2.099 sum 0.494 -1.339 -0.114 1.432 Atomic orbital electron populations 1.86720 1.16810 1.33272 1.97156 1.25416 0.84949 1.12746 0.95018 0.93072 0.78809 0.76343 0.87935 1.19447 1.04058 0.90836 0.98547 1.20730 0.96075 0.98970 0.91608 1.17982 1.01939 0.92680 0.95265 1.21063 0.97279 0.99971 0.92673 1.20881 1.00637 0.94484 0.98527 1.20935 0.98138 0.94278 0.98595 1.20989 0.99852 0.99883 0.93071 1.17797 0.96964 0.92269 0.94054 1.21009 1.07256 1.00147 0.94410 1.18408 0.93956 0.90635 0.86923 1.86001 1.77505 1.20266 1.39006 1.22852 1.01026 0.77841 0.98659 1.22328 1.00115 0.95694 0.94607 0.87591 1.23056 1.02659 0.93806 0.96183 1.23319 0.92414 0.85808 0.96731 0.89711 1.86523 1.66907 1.49671 1.33463 1.23804 0.99372 0.98071 0.98917 0.78596 0.90779 1.17864 1.17471 0.84153 0.85067 0.85668 0.85763 0.85604 0.84867 0.91374 0.91532 0.90025 0.88799 0.77152 0.89114 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.26 12.65 -35.23 -0.45 -1.71 16 2 C -0.07 -0.13 2.31 36.00 0.08 -0.05 16 3 Si 0.74 0.48 30.13 -169.99 -5.12 -4.64 16 4 C -0.13 -0.27 5.26 -104.83 -0.55 -0.82 16 5 C -0.06 -0.07 8.36 -39.50 -0.33 -0.40 16 6 C -0.08 -0.16 5.74 -106.81 -0.61 -0.77 16 7 C -0.09 -0.05 9.77 -39.49 -0.39 -0.43 16 8 C -0.13 -0.02 9.95 -39.93 -0.40 -0.42 16 9 C -0.10 -0.04 9.95 -39.93 -0.40 -0.43 16 10 C -0.12 -0.12 9.77 -39.48 -0.39 -0.51 16 11 C -0.01 -0.02 5.74 -106.84 -0.61 -0.64 16 12 C -0.21 -0.35 8.74 -39.34 -0.34 -0.70 16 13 C 0.15 0.31 6.57 -39.58 -0.26 0.05 16 14 O -0.31 -0.39 8.93 -19.36 -0.17 -0.56 16 15 C 0.07 -0.05 4.55 37.16 0.17 0.12 16 16 C -0.11 0.15 4.00 -89.81 -0.36 -0.21 16 17 H 0.11 -0.18 8.14 -51.93 -0.42 -0.61 16 18 C -0.12 0.15 7.47 -25.92 -0.19 -0.04 16 19 C 0.08 -0.07 5.21 -25.83 -0.13 -0.21 16 20 H 0.09 -0.18 8.14 -51.93 -0.42 -0.61 16 21 O -0.56 -0.25 13.67 -35.23 -0.48 -0.73 16 22 C -0.16 0.15 7.48 -25.83 -0.19 -0.04 16 23 H 0.37 0.18 8.54 45.56 0.39 0.57 16 24 H 0.07 0.15 7.80 -51.93 -0.40 -0.25 16 25 H -0.25 -0.86 7.11 56.52 0.40 -0.46 16 26 H -0.25 -0.48 7.11 56.52 0.40 -0.08 16 27 H 0.14 -0.18 5.02 -52.48 -0.26 -0.45 16 28 H 0.13 -0.25 8.06 -52.49 -0.42 -0.68 16 29 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 30 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 31 H 0.13 -0.10 8.06 -52.48 -0.42 -0.52 16 32 H 0.13 -0.02 6.19 -52.49 -0.32 -0.34 16 33 H 0.07 -0.11 7.63 -51.93 -0.40 -0.50 16 34 H 0.07 -0.06 7.36 -51.93 -0.38 -0.44 16 35 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 36 H 0.09 -0.07 8.10 -51.93 -0.42 -0.49 16 37 H 0.38 -1.31 9.12 45.56 0.42 -0.90 16 38 H 0.09 -0.01 7.92 -51.93 -0.41 -0.42 16 39 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 LS Contribution 322.94 15.07 4.87 4.87 Total: 0.00 -6.15 322.94 -10.64 -16.79 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: -4.38 Total: -8.52 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.91 Total: -5.50 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: -1.10 Total: -3.00 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: -5.12 Total: -4.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -6.15 -10.64 -16.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.227 kcal (2) G-P(sol) polarization free energy of solvation -6.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds