Wall clock time and date at job start Mon Mar 8 2021 15:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35884 * 116.99894 * 179.97438 * 10 9 8 12 12 C 1.39810 * 119.56688 * 179.97438 * 11 10 9 13 13 C 1.50704 * 119.53266 * 0.02606 * 12 11 10 14 14 O 1.42897 * 109.46824 * 74.99759 * 13 12 11 15 15 Si 1.86297 * 109.46916 * 194.99848 * 13 12 11 16 16 H 1.48494 * 109.47183 * 60.00016 * 15 13 12 17 17 H 1.48501 * 109.46749 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47091 * 299.99780 * 15 13 12 19 19 C 1.36014 * 120.93102 * 179.97438 * 12 11 10 20 20 C 1.40552 * 119.73436 * 0.02562 * 19 12 11 21 21 C 1.40527 * 121.22374 * 180.02562 * 20 19 12 22 22 C 1.36101 * 119.67038 * 179.97438 * 21 20 19 23 23 C 1.39380 * 120.99960 * 0.02562 * 22 21 20 24 24 C 1.36091 * 120.98497 * 359.97438 * 23 22 21 25 25 C 1.40582 * 119.65521 * 0.02562 * 24 23 22 26 26 C 1.36603 * 119.56725 * 359.73139 * 11 10 9 27 27 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 28 28 C 1.38234 * 120.00067 * 0.02562 * 27 8 7 29 29 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 30 30 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 31 31 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 34 34 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 35 35 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 36 36 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 37 37 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 38 38 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 39 39 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 40 40 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 41 41 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 42 42 H 1.08997 * 109.47185 * 314.99825 * 13 12 11 43 43 H 0.96703 * 113.99764 * 180.02562 * 14 13 12 44 44 H 1.08005 * 120.13028 * 179.97438 * 19 12 11 45 45 H 1.07997 * 120.16788 * 359.95167 * 21 20 19 46 46 H 1.08002 * 119.50079 * 179.97438 * 22 21 20 47 47 H 1.07995 * 119.50983 * 180.02562 * 23 22 21 48 48 H 1.07992 * 120.17378 * 180.02562 * 24 23 22 49 49 H 1.07998 * 120.19032 * 359.97438 * 26 11 10 50 50 H 1.08001 * 119.99624 * 180.02562 * 27 8 7 51 51 H 1.07999 * 120.00008 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9734 -3.4893 6.0516 12 6 7.3703 -3.5152 6.1016 13 6 8.1653 -2.8732 4.9939 14 8 8.1179 -1.4521 5.1356 15 14 9.9350 -3.4478 5.0861 16 1 9.9842 -4.9246 4.9389 17 1 10.7182 -2.8156 3.9942 18 1 10.5131 -3.0616 6.3983 19 6 8.0220 -4.1108 7.1363 20 6 7.2847 -4.7104 8.1718 21 6 7.9257 -5.3339 9.2559 22 6 7.1806 -5.9043 10.2417 23 6 5.7878 -5.8807 10.1938 24 6 5.1323 -5.2862 9.1599 25 6 5.8680 -4.6864 8.1228 26 6 5.2260 -4.0579 7.0436 27 6 3.1780 -0.8211 3.8164 28 6 2.7118 -0.1705 2.6894 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5739 1.7564 -0.0005 33 1 2.1206 2.2702 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5212 36 1 2.1207 -0.3644 -2.4112 37 1 3.5740 -0.8787 -1.5209 38 1 2.5363 -2.7986 0.5823 39 1 3.3666 -3.9577 2.5898 40 1 3.5590 -2.3806 5.9006 41 1 3.5628 -3.9213 5.0094 42 1 7.7410 -3.1566 4.0307 43 1 8.6092 -0.9723 4.4547 44 1 9.1017 -4.1237 7.1616 45 1 9.0041 -5.3608 9.3063 46 1 7.6760 -6.3831 11.0734 47 1 5.2203 -6.3403 10.9893 48 1 4.0527 -5.2752 9.1361 49 1 4.1475 -4.0277 6.9962 50 1 3.3587 -0.2656 4.7248 51 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_13906094_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:46:19 Heat of formation + Delta-G solvation = -45.136022 kcal Electronic energy + Delta-G solvation = -29512.105779 eV Core-core repulsion = 25657.582209 eV Total energy + Delta-G solvation = -3854.523570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.79348 -40.34907 -39.39912 -37.99958 -36.35693 -33.64785 -33.03384 -31.86700 -31.55424 -29.78875 -29.55129 -28.44899 -28.42140 -27.39388 -26.72938 -23.88249 -23.46350 -23.14686 -22.80420 -21.82154 -19.40468 -18.43036 -18.32475 -17.75489 -17.41102 -16.94974 -16.35737 -16.21034 -15.84328 -15.60225 -15.53780 -15.37064 -14.99501 -14.52430 -14.37217 -14.28667 -14.21761 -14.14159 -14.09372 -14.00204 -13.85492 -13.72969 -13.64208 -13.30470 -13.26898 -13.21396 -13.10943 -12.76623 -12.57222 -12.51669 -12.13893 -12.13117 -11.93883 -11.68459 -11.62553 -11.36851 -11.04477 -10.91189 -10.82556 -10.79021 -10.22641 -9.76241 -9.67272 -9.22690 -8.66101 -0.44081 0.10994 0.19040 0.56506 1.10272 1.15077 1.43520 1.48852 1.70183 1.84363 1.88717 1.89835 1.99242 2.30837 2.53996 3.05369 3.12636 3.44359 3.61657 3.78697 3.82122 3.87839 4.01869 4.05301 4.08155 4.16686 4.19193 4.24646 4.31967 4.34865 4.45923 4.52042 4.57302 4.64611 4.67563 4.69528 4.71142 4.74792 4.75031 4.75864 4.77337 4.90661 5.01982 5.03139 5.08242 5.17116 5.25909 5.37021 5.41191 5.46485 5.49998 5.52959 5.62447 5.63168 5.63765 5.64837 5.70942 6.02711 6.12819 6.43353 6.68900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.092 4.092 7 C -0.107 4.107 8 C -0.086 4.086 9 C 0.098 3.902 10 O -0.296 6.296 11 C 0.163 3.837 12 C -0.086 4.086 13 C -0.073 4.073 14 O -0.539 6.539 15 Si 0.939 3.061 16 H -0.247 1.247 17 H -0.253 1.253 18 H -0.246 1.246 19 C -0.072 4.072 20 C -0.080 4.080 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.102 4.102 24 C -0.120 4.120 25 C -0.007 4.007 26 C -0.216 4.216 27 C -0.104 4.104 28 C -0.092 4.092 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.378 0.622 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.127 0.873 49 H 0.135 0.865 50 H 0.121 0.879 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -0.377 -1.539 1.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.403 4.403 6 C -0.110 4.110 7 C -0.125 4.125 8 C -0.086 4.086 9 C 0.024 3.976 10 O -0.209 6.209 11 C 0.117 3.883 12 C -0.087 4.087 13 C -0.183 4.183 14 O -0.344 6.344 15 Si 0.762 3.238 16 H -0.170 1.170 17 H -0.177 1.177 18 H -0.170 1.170 19 C -0.089 4.089 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.147 4.147 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.008 4.008 26 C -0.235 4.235 27 C -0.122 4.122 28 C -0.110 4.110 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.225 0.775 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.145 0.855 49 H 0.152 0.848 50 H 0.139 0.861 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.390 -0.754 -1.096 1.386 hybrid contribution -0.295 0.092 -0.096 0.323 sum -0.684 -0.661 -1.192 1.525 Atomic orbital electron populations 1.26123 1.20456 1.04573 1.04503 0.78183 0.66840 0.66142 0.63713 1.26135 1.06503 1.18546 1.04564 1.26136 1.06486 1.08038 1.15071 1.27463 1.03157 0.99502 1.10152 1.21065 0.97598 0.94670 0.97694 1.21137 0.98889 0.99867 0.92602 1.19437 1.00679 0.94175 0.94343 1.21664 0.78934 1.00327 0.96723 1.86203 1.20385 1.72520 1.41809 1.18341 0.91105 0.91795 0.87060 1.18369 0.90698 1.02217 0.97407 1.24632 1.09342 0.85403 0.98968 1.86527 1.77143 1.15627 1.55150 0.85894 0.75401 0.81140 0.81408 1.17010 1.17703 1.17002 1.20861 0.99692 0.96310 0.92063 1.17911 0.92623 1.01346 0.96092 1.21024 0.99923 0.96830 0.93268 1.20853 0.94054 1.00530 0.99229 1.20921 0.94630 0.98329 0.98105 1.20988 0.99736 0.99020 0.94016 1.17794 0.92231 0.96393 0.94333 1.20996 1.00009 1.06248 0.96263 1.21153 0.98512 0.93560 0.98966 1.21075 0.97513 0.99735 0.92628 0.91161 0.91027 0.91176 0.91027 0.90957 0.91159 0.91183 0.90948 0.91039 0.85947 0.86186 0.90979 0.91027 0.90475 0.77514 0.84744 0.85433 0.85768 0.85791 0.85541 0.84763 0.86117 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.68 8.65 101.05 0.87 1.55 16 2 Si 1.06 -2.59 12.32 -169.99 -2.09 -4.68 16 3 C -0.45 0.75 8.54 101.05 0.86 1.62 16 4 C -0.45 0.79 8.53 101.05 0.86 1.65 16 5 C -0.36 0.01 4.59 -39.58 -0.18 -0.18 16 6 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 7 C -0.11 -0.13 9.70 -39.58 -0.38 -0.52 16 8 C -0.09 -0.15 5.51 -104.62 -0.58 -0.73 16 9 C 0.10 0.11 4.85 36.01 0.17 0.29 16 10 O -0.30 -1.02 9.39 -19.38 -0.18 -1.20 16 11 C 0.16 0.58 6.63 -39.58 -0.26 0.32 16 12 C -0.09 -0.29 5.28 -104.83 -0.55 -0.85 16 13 C -0.07 -0.12 2.34 36.01 0.08 -0.04 16 14 O -0.54 -1.17 12.86 -35.23 -0.45 -1.62 16 15 Si 0.94 0.34 25.46 -169.99 -4.33 -3.99 16 16 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 17 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 18 H -0.25 -0.25 6.72 56.52 0.38 0.13 16 19 C -0.07 -0.20 8.36 -39.51 -0.33 -0.53 16 20 C -0.08 -0.25 5.74 -106.81 -0.61 -0.87 16 21 C -0.09 -0.15 9.77 -39.49 -0.39 -0.54 16 22 C -0.13 -0.13 9.95 -39.92 -0.40 -0.53 16 23 C -0.10 -0.10 9.95 -39.93 -0.40 -0.50 16 24 C -0.12 -0.20 9.77 -39.47 -0.39 -0.58 16 25 C -0.01 -0.02 5.74 -106.84 -0.61 -0.64 16 26 C -0.22 -0.57 8.74 -39.35 -0.34 -0.91 16 27 C -0.10 -0.16 9.70 -39.58 -0.38 -0.54 16 28 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 32 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 35 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 39 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 40 H 0.07 0.02 7.56 -51.93 -0.39 -0.37 16 41 H 0.07 -0.02 7.59 -51.93 -0.39 -0.41 16 42 H 0.08 0.07 7.80 -51.93 -0.40 -0.33 16 43 H 0.38 -0.85 8.74 45.56 0.40 -0.45 16 44 H 0.14 0.14 4.77 -52.48 -0.25 -0.11 16 45 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 46 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 47 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 48 H 0.13 -0.04 8.06 -52.49 -0.42 -0.47 16 49 H 0.13 0.07 6.19 -52.49 -0.32 -0.25 16 50 H 0.12 0.07 8.06 -52.49 -0.42 -0.35 16 51 H 0.12 -0.15 7.44 -52.49 -0.39 -0.54 16 LS Contribution 418.85 15.07 6.31 6.31 Total: 0.00 -6.85 418.85 -11.63 -18.48 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -7.20 Total: -9.96 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.69 Total: -3.35 kcal Atomic # 8 Polarization: -2.19 SS G_CDS: -0.63 Total: -2.82 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: -6.42 Total: -8.67 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -6.85 -11.63 -18.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.655 kcal (2) G-P(sol) polarization free energy of solvation -6.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds