Wall clock time and date at job start Mon Mar 8 2021 15:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35884 * 116.99894 * 179.97438 * 10 9 8 12 12 C 1.39810 * 119.56688 * 179.97438 * 11 10 9 13 13 C 1.50704 * 119.53266 * 0.02606 * 12 11 10 14 14 O 1.42897 * 109.46824 * 74.99759 * 13 12 11 15 15 Si 1.86297 * 109.46916 * 194.99848 * 13 12 11 16 16 H 1.48494 * 109.47183 * 60.00016 * 15 13 12 17 17 H 1.48501 * 109.46749 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47091 * 299.99780 * 15 13 12 19 19 C 1.36014 * 120.93102 * 179.97438 * 12 11 10 20 20 C 1.40552 * 119.73436 * 0.02562 * 19 12 11 21 21 C 1.40527 * 121.22374 * 180.02562 * 20 19 12 22 22 C 1.36101 * 119.67038 * 179.97438 * 21 20 19 23 23 C 1.39380 * 120.99960 * 0.02562 * 22 21 20 24 24 C 1.36091 * 120.98497 * 359.97438 * 23 22 21 25 25 C 1.40582 * 119.65521 * 0.02562 * 24 23 22 26 26 C 1.36603 * 119.56725 * 359.73139 * 11 10 9 27 27 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 28 28 C 1.38234 * 120.00067 * 0.02562 * 27 8 7 29 29 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 30 30 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 31 31 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 34 34 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 35 35 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 36 36 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 37 37 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 38 38 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 39 39 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 40 40 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 41 41 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 42 42 H 1.08997 * 109.47185 * 314.99825 * 13 12 11 43 43 H 0.96703 * 113.99764 * 180.02562 * 14 13 12 44 44 H 1.08005 * 120.13028 * 179.97438 * 19 12 11 45 45 H 1.07997 * 120.16788 * 359.95167 * 21 20 19 46 46 H 1.08002 * 119.50079 * 179.97438 * 22 21 20 47 47 H 1.07995 * 119.50983 * 180.02562 * 23 22 21 48 48 H 1.07992 * 120.17378 * 180.02562 * 24 23 22 49 49 H 1.07998 * 120.19032 * 359.97438 * 26 11 10 50 50 H 1.08001 * 119.99624 * 180.02562 * 27 8 7 51 51 H 1.07999 * 120.00008 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9734 -3.4893 6.0516 12 6 7.3703 -3.5152 6.1016 13 6 8.1653 -2.8732 4.9939 14 8 8.1179 -1.4521 5.1356 15 14 9.9350 -3.4478 5.0861 16 1 9.9842 -4.9246 4.9389 17 1 10.7182 -2.8156 3.9942 18 1 10.5131 -3.0616 6.3983 19 6 8.0220 -4.1108 7.1363 20 6 7.2847 -4.7104 8.1718 21 6 7.9257 -5.3339 9.2559 22 6 7.1806 -5.9043 10.2417 23 6 5.7878 -5.8807 10.1938 24 6 5.1323 -5.2862 9.1599 25 6 5.8680 -4.6864 8.1228 26 6 5.2260 -4.0579 7.0436 27 6 3.1780 -0.8211 3.8164 28 6 2.7118 -0.1705 2.6894 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5739 1.7564 -0.0005 33 1 2.1206 2.2702 -0.8900 34 1 2.1207 2.2702 0.8900 35 1 2.1206 -1.9059 -1.5212 36 1 2.1207 -0.3644 -2.4112 37 1 3.5740 -0.8787 -1.5209 38 1 2.5363 -2.7986 0.5823 39 1 3.3666 -3.9577 2.5898 40 1 3.5590 -2.3806 5.9006 41 1 3.5628 -3.9213 5.0094 42 1 7.7410 -3.1566 4.0307 43 1 8.6092 -0.9723 4.4547 44 1 9.1017 -4.1237 7.1616 45 1 9.0041 -5.3608 9.3063 46 1 7.6760 -6.3831 11.0734 47 1 5.2203 -6.3403 10.9893 48 1 4.0527 -5.2752 9.1361 49 1 4.1475 -4.0277 6.9962 50 1 3.3587 -0.2656 4.7248 51 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13906094_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:46:18 Heat of formation + Delta-G solvation = -34.373680 kcal Electronic energy + Delta-G solvation = -29511.639089 eV Core-core repulsion = 25657.582209 eV Total energy + Delta-G solvation = -3854.056880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 366.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.91530 -40.41293 -39.47204 -38.10813 -36.46200 -33.75820 -33.08093 -31.88732 -31.64749 -29.87790 -29.42408 -28.29228 -28.26904 -27.45611 -26.82895 -23.99143 -23.48896 -23.24633 -22.90120 -21.87846 -19.52895 -18.53884 -18.41316 -17.85103 -17.44192 -17.05075 -16.42814 -16.25974 -15.92882 -15.66323 -15.60920 -15.45096 -15.08053 -14.55919 -14.43482 -14.32221 -14.18767 -14.10084 -14.03953 -14.01228 -13.76995 -13.73154 -13.64765 -13.27324 -13.13554 -13.11348 -12.96637 -12.84200 -12.61620 -12.55083 -12.20016 -12.16876 -11.95599 -11.75877 -11.70493 -11.47295 -10.92265 -10.91445 -10.77961 -10.75655 -10.31109 -9.81159 -9.69270 -9.36253 -8.78734 -0.56235 -0.03320 0.15484 0.51637 0.97969 1.09294 1.41013 1.45545 1.83334 1.83710 1.87479 1.98575 2.02850 2.28335 2.66840 3.01026 3.01776 3.36372 3.52697 3.71809 3.78721 3.81895 3.95870 3.99106 4.00257 4.10768 4.13602 4.22335 4.26799 4.30912 4.37588 4.50435 4.52657 4.55683 4.70667 4.80566 4.84887 4.85006 4.88891 4.89575 4.90088 4.90936 4.93123 4.99383 5.00304 5.15403 5.17672 5.24504 5.39693 5.53467 5.55862 5.56401 5.59013 5.59537 5.59878 5.68089 5.70908 5.96881 6.11661 6.30073 6.78267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.462 4.462 5 C -0.373 4.373 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.101 4.101 9 C 0.097 3.903 10 O -0.310 6.310 11 C 0.145 3.855 12 C -0.106 4.106 13 C -0.080 4.080 14 O -0.559 6.559 15 Si 0.978 3.022 16 H -0.255 1.255 17 H -0.249 1.249 18 H -0.256 1.256 19 C -0.079 4.079 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.028 4.028 26 C -0.219 4.219 27 C -0.121 4.121 28 C -0.103 4.103 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.394 0.606 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.149 0.851 50 H 0.122 0.878 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -0.606 -1.622 2.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.412 4.412 6 C -0.120 4.120 7 C -0.139 4.139 8 C -0.101 4.101 9 C 0.023 3.977 10 O -0.224 6.224 11 C 0.099 3.901 12 C -0.107 4.107 13 C -0.189 4.189 14 O -0.367 6.367 15 Si 0.800 3.200 16 H -0.178 1.178 17 H -0.173 1.173 18 H -0.180 1.180 19 C -0.097 4.097 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.149 4.149 23 C -0.123 4.123 24 C -0.148 4.148 25 C -0.028 4.028 26 C -0.237 4.237 27 C -0.139 4.139 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.159 0.841 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.244 0.756 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.166 0.834 50 H 0.140 0.860 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.493 -0.977 -1.178 1.608 hybrid contribution -0.304 0.161 -0.037 0.346 sum -0.797 -0.816 -1.215 1.666 Atomic orbital electron populations 1.26274 1.21468 1.04509 1.04592 0.77169 0.65246 0.64564 0.61583 1.26288 1.06380 1.19482 1.04862 1.26271 1.06386 1.08510 1.15724 1.28079 1.02403 0.99614 1.11080 1.21392 0.97289 0.95186 0.98148 1.21362 0.99207 1.00457 0.92862 1.19578 1.01235 0.94477 0.94794 1.21757 0.78067 1.01009 0.96867 1.86173 1.21440 1.72747 1.42020 1.18541 0.91535 0.92499 0.87502 1.18691 0.91093 1.02714 0.98195 1.24817 1.10521 0.85128 0.98445 1.86475 1.77862 1.16146 1.56265 0.85331 0.73637 0.80216 0.80783 1.17833 1.17301 1.17988 1.21057 1.00356 0.96263 0.91996 1.18202 0.93013 1.01871 0.96791 1.21301 1.01031 0.96862 0.93083 1.21194 0.94293 0.99929 0.99521 1.21262 0.94979 0.97761 0.98337 1.21240 1.00659 0.99025 0.93893 1.18074 0.92645 0.97040 0.95022 1.21192 1.00762 1.05808 0.95969 1.21343 0.99188 0.93798 0.99606 1.21373 0.97359 1.00700 0.92610 0.91414 0.90614 0.91336 0.91385 0.90588 0.90981 0.90861 0.90588 0.91350 0.84140 0.85452 0.90542 0.89981 0.90465 0.75611 0.83574 0.83738 0.83609 0.83599 0.83980 0.83362 0.85988 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.62 8.65 113.37 0.98 2.60 16 2 Si 1.13 -6.06 12.32 68.60 0.85 -5.22 16 3 C -0.46 1.75 8.54 113.37 0.97 2.72 16 4 C -0.46 1.91 8.53 113.37 0.97 2.88 16 5 C -0.37 -0.05 4.59 22.27 0.10 0.06 16 6 C -0.10 -0.13 9.29 22.27 0.21 0.08 16 7 C -0.12 -0.42 9.70 22.27 0.22 -0.20 16 8 C -0.10 -0.49 5.51 -19.86 -0.11 -0.60 16 9 C 0.10 0.38 4.85 71.24 0.35 0.73 16 10 O -0.31 -2.73 9.39 -92.25 -0.87 -3.60 16 11 C 0.15 1.31 6.63 22.27 0.15 1.46 16 12 C -0.11 -0.90 5.28 -20.00 -0.11 -1.00 16 13 C -0.08 -0.37 2.34 71.24 0.17 -0.21 16 14 O -0.56 -3.15 12.86 -148.98 -1.92 -5.06 16 15 Si 0.98 1.09 25.46 68.60 1.75 2.84 16 16 H -0.25 -0.54 7.11 99.48 0.71 0.17 16 17 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 18 H -0.26 -0.61 6.72 99.48 0.67 0.06 16 19 C -0.08 -0.55 8.36 22.32 0.19 -0.37 16 20 C -0.10 -0.73 5.74 -21.28 -0.12 -0.85 16 21 C -0.11 -0.37 9.77 22.33 0.22 -0.15 16 22 C -0.13 -0.18 9.95 22.05 0.22 0.04 16 23 C -0.11 -0.14 9.95 22.05 0.22 0.08 16 24 C -0.13 -0.45 9.77 22.34 0.22 -0.23 16 25 C -0.03 -0.20 5.74 -21.30 -0.12 -0.32 16 26 C -0.22 -1.47 8.74 22.42 0.20 -1.28 16 27 C -0.12 -0.54 9.70 22.27 0.22 -0.33 16 28 C -0.10 -0.20 9.29 22.27 0.21 0.01 16 29 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 31 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 32 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.07 -0.29 7.69 -2.39 -0.02 -0.31 16 35 H 0.07 -0.34 7.69 -2.38 -0.02 -0.36 16 36 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 38 H 0.14 -0.46 7.43 -2.91 -0.02 -0.48 16 39 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.08 0.17 7.56 -2.39 -0.02 0.15 16 41 H 0.08 0.08 7.59 -2.39 -0.02 0.06 16 42 H 0.08 0.28 7.80 -2.39 -0.02 0.26 16 43 H 0.39 -1.40 8.74 -74.06 -0.65 -2.05 16 44 H 0.15 0.46 4.77 -2.91 -0.01 0.44 16 45 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 46 H 0.15 -0.52 8.06 -2.91 -0.02 -0.54 16 47 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 48 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 49 H 0.15 0.34 6.19 -2.91 -0.02 0.32 16 50 H 0.12 0.37 8.06 -2.91 -0.02 0.34 16 51 H 0.14 -0.31 7.44 -2.91 -0.02 -0.33 16 Total: 0.00 -16.38 418.85 6.13 -10.26 By element: Atomic # 1 Polarization: -5.31 SS G_CDS: 0.99 Total: -4.32 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.32 Total: 5.10 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -2.78 Total: -8.66 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.59 Total: -2.38 kcal Total: -16.38 6.13 -10.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13906094_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.118 kcal (2) G-P(sol) polarization free energy of solvation -16.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds