Wall clock time and date at job start Mon Mar 8 2021 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47237 * 2 1 4 4 C 1.50706 * 109.47041 * 120.00398 * 2 1 3 5 5 C 1.38239 * 119.94125 * 300.00049 * 4 2 1 6 6 C 1.38165 * 120.05563 * 180.02562 * 5 4 2 7 7 C 1.38714 * 119.94358 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.05570 * 179.97438 * 7 6 5 9 9 C 1.42900 * 117.00319 * 0.02562 * 8 7 6 10 10 C 1.52994 * 109.47717 * 179.97438 * 9 8 7 11 11 O 1.42902 * 109.46899 * 64.99978 * 10 9 8 12 12 Si 1.63098 * 114.00065 * 179.97438 * 11 10 9 13 13 C 1.86296 * 109.47540 * 300.00296 * 12 11 10 14 14 C 1.86306 * 109.47075 * 60.00227 * 12 11 10 15 15 C 1.86299 * 109.47341 * 180.02562 * 12 11 10 16 16 C 1.53001 * 109.47072 * 60.00229 * 15 12 11 17 17 C 1.53001 * 109.47483 * 180.02562 * 15 12 11 18 18 C 1.52997 * 109.47153 * 300.00615 * 15 12 11 19 19 C 1.38747 * 119.88773 * 359.97438 * 7 6 5 20 20 C 1.50701 * 120.02671 * 179.97438 * 19 7 6 21 21 O 1.42895 * 109.47079 * 75.00626 * 20 19 7 22 22 Si 1.86301 * 109.47149 * 195.00121 * 20 19 7 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 C 1.38122 * 119.94620 * 0.26056 * 19 7 6 27 27 H 1.08994 * 109.47134 * 299.99641 * 1 2 3 28 28 H 1.08997 * 109.46878 * 60.00058 * 1 2 3 29 29 H 1.09001 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46957 * 239.99833 * 2 1 3 31 31 H 1.09007 * 109.47367 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47329 * 300.00300 * 3 2 1 33 33 H 1.09004 * 109.47283 * 60.00033 * 3 2 1 34 34 H 1.08001 * 119.97665 * 359.97395 * 5 4 2 35 35 H 1.08002 * 120.02997 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47376 * 300.00476 * 9 8 7 37 37 H 1.09002 * 109.47123 * 59.99894 * 9 8 7 38 38 H 1.08996 * 109.47696 * 185.00319 * 10 9 8 39 39 H 1.09002 * 109.47161 * 305.00507 * 10 9 8 40 40 H 1.09013 * 109.46927 * 59.99777 * 13 12 11 41 41 H 1.08994 * 109.47296 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.47223 * 300.00177 * 13 12 11 43 43 H 1.09003 * 109.46823 * 59.99900 * 14 12 11 44 44 H 1.09000 * 109.47022 * 179.97438 * 14 12 11 45 45 H 1.09001 * 109.47092 * 300.00472 * 14 12 11 46 46 H 1.09003 * 109.46861 * 60.00057 * 16 15 12 47 47 H 1.08996 * 109.47380 * 180.02562 * 16 15 12 48 48 H 1.09003 * 109.47235 * 300.00070 * 16 15 12 49 49 H 1.09003 * 109.46420 * 60.00475 * 17 15 12 50 50 H 1.08996 * 109.47261 * 180.02562 * 17 15 12 51 51 H 1.08999 * 109.46848 * 300.00639 * 17 15 12 52 52 H 1.09000 * 109.47323 * 59.99309 * 18 15 12 53 53 H 1.09007 * 109.47147 * 180.02562 * 18 15 12 54 54 H 1.09003 * 109.47121 * 299.99392 * 18 15 12 55 55 H 1.09001 * 109.47380 * 315.00023 * 20 19 7 56 56 H 0.96708 * 113.99763 * 299.99687 * 21 20 19 57 57 H 1.07999 * 119.97350 * 179.72541 * 26 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6976 -0.2373 2.4855 6 6 2.1573 -0.8865 3.6151 7 6 2.9548 -2.0144 3.4892 8 8 3.4086 -2.6545 4.5988 9 6 3.0251 -2.1113 5.8636 10 6 3.6255 -2.9596 6.9863 11 8 5.0505 -2.8599 6.9486 12 14 5.8070 -3.7262 8.1051 13 6 5.2588 -3.1331 9.7839 14 6 5.3768 -5.5286 7.9123 15 6 7.6496 -3.5059 7.9407 16 6 8.0025 -2.0256 8.0994 17 6 8.3593 -4.3190 9.0252 18 6 8.1004 -3.9925 6.5620 19 6 3.2885 -2.4880 2.2284 20 6 4.1552 -3.7128 2.0880 21 8 3.3861 -4.8781 2.3919 22 14 4.7907 -3.8267 0.3404 23 1 5.5901 -2.6157 0.0243 24 1 3.6439 -3.9217 -0.5982 25 1 5.6443 -5.0340 0.2018 26 6 2.8304 -1.8326 1.1022 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.0769 0.6412 2.5831 35 1 1.8958 -0.5162 4.5954 36 1 3.3910 -1.0878 5.9456 37 1 1.9382 -2.1162 5.9466 38 1 3.2614 -2.5994 7.9485 39 1 3.3305 -4.0004 6.8528 40 1 4.1805 -3.2616 9.8804 41 1 5.7640 -3.7123 10.5567 42 1 5.5104 -2.0785 9.8967 43 1 5.6976 -5.8756 6.9300 44 1 5.8827 -6.1075 8.6849 45 1 4.2987 -5.6571 8.0087 46 1 7.6813 -1.6789 9.0817 47 1 9.0805 -1.8967 8.0028 48 1 7.4969 -1.4467 7.3265 49 1 8.1079 -5.3735 8.9115 50 1 9.4373 -4.1897 8.9292 51 1 8.0382 -3.9727 10.0075 52 1 7.5948 -3.4136 5.7891 53 1 9.1786 -3.8641 6.4659 54 1 7.8491 -5.0471 6.4488 55 1 4.9971 -3.6431 2.7769 56 1 3.0228 -4.8868 3.2882 57 1 3.0935 -2.1982 0.1207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13942222_10264010.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:18:03 Heat of formation + Delta-G solvation = -157.470411 kcal Electronic energy + Delta-G solvation = -30963.003935 eV Core-core repulsion = 27060.359496 eV Total energy + Delta-G solvation = -3902.644439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.219 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.49551 -39.34147 -37.92947 -37.55081 -36.82634 -35.57751 -32.63091 -31.18603 -29.71495 -29.26937 -29.05396 -27.97444 -27.83905 -27.37742 -26.64847 -24.73648 -23.67031 -22.47506 -20.65035 -20.41279 -19.34497 -18.17502 -18.01746 -17.56888 -16.70468 -16.41621 -16.15955 -15.86096 -15.79858 -15.51290 -15.35421 -15.23294 -14.86207 -14.80561 -14.73918 -14.38661 -14.18539 -14.08457 -13.89592 -13.55815 -13.52048 -13.37735 -13.28665 -13.16791 -13.03739 -12.95818 -12.92873 -12.80532 -12.52890 -12.40114 -12.27466 -12.16589 -11.95368 -11.89576 -11.83025 -11.70148 -11.64850 -11.62391 -11.48868 -11.27861 -11.08105 -10.96196 -10.30277 -10.04998 -9.93727 -9.01150 0.24483 0.39982 1.17962 1.45564 1.47964 1.53862 1.79375 1.90967 2.14492 2.21044 2.48808 2.66240 3.58160 3.70162 3.80107 3.94886 3.99470 4.11123 4.11788 4.12335 4.14418 4.21692 4.30091 4.32463 4.35778 4.41585 4.45315 4.47480 4.53472 4.64796 4.74852 4.76997 4.79408 4.80550 4.80900 4.81269 4.82626 4.82878 4.85073 4.99656 5.00092 5.06534 5.08773 5.09103 5.11374 5.20108 5.27353 5.32605 5.34038 5.39037 5.39695 5.40587 5.43410 5.50078 5.60711 5.65695 5.66793 5.78853 6.43829 6.64939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.114 4.114 5 C -0.073 4.073 6 C -0.205 4.205 7 C 0.131 3.869 8 O -0.316 6.316 9 C 0.049 3.951 10 C 0.075 3.925 11 O -0.637 6.637 12 Si 1.319 2.681 13 C -0.516 4.516 14 C -0.519 4.519 15 C -0.385 4.385 16 C -0.136 4.136 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.159 4.159 20 C -0.083 4.083 21 O -0.551 6.551 22 Si 1.028 2.972 23 H -0.243 1.243 24 H -0.259 1.259 25 H -0.271 1.271 26 C -0.099 4.099 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.054 0.946 49 H 0.062 0.938 50 H 0.048 0.952 51 H 0.065 0.935 52 H 0.053 0.947 53 H 0.046 0.954 54 H 0.058 0.942 55 H 0.078 0.922 56 H 0.376 0.624 57 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 2.725 3.391 5.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.114 4.114 5 C -0.091 4.091 6 C -0.224 4.224 7 C 0.085 3.915 8 O -0.230 6.230 9 C -0.026 4.026 10 C 0.000 4.000 11 O -0.597 6.597 12 Si 1.448 2.552 13 C -0.618 4.618 14 C -0.620 4.620 15 C -0.427 4.427 16 C -0.193 4.193 17 C -0.197 4.197 18 C -0.194 4.194 19 C -0.160 4.160 20 C -0.191 4.191 21 O -0.358 6.358 22 Si 0.849 3.151 23 H -0.166 1.166 24 H -0.184 1.184 25 H -0.196 1.196 26 C -0.117 4.117 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.084 0.916 52 H 0.072 0.928 53 H 0.065 0.935 54 H 0.077 0.923 55 H 0.096 0.904 56 H 0.224 0.776 57 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.143 2.526 1.760 3.751 hybrid contribution -0.055 -0.079 1.555 1.558 sum -2.198 2.447 3.316 4.670 Atomic orbital electron populations 1.21849 0.93670 1.01821 1.02641 1.20134 0.96472 0.96317 0.94591 1.21858 1.00923 0.94607 1.02647 1.19919 0.99369 0.96279 0.95840 1.21043 0.97849 0.99221 0.90964 1.21515 1.02585 0.97306 1.00990 1.18869 0.94000 0.92192 0.86424 1.86071 1.70900 1.52882 1.13151 1.23271 1.00262 0.98786 0.80274 1.22373 0.79014 1.00881 0.97759 1.85405 1.22402 1.79752 1.72116 0.76139 0.61965 0.60017 0.57031 1.27065 1.06599 1.06769 1.21356 1.27131 1.05729 1.24499 1.04679 1.25972 1.20825 0.98142 0.97804 1.21528 1.01237 0.94692 1.01816 1.21598 1.00383 0.99771 0.97990 1.21529 1.00967 1.00976 0.95880 1.19660 1.04741 1.00321 0.91238 1.25187 0.95584 0.83877 1.14457 1.86636 1.71497 1.40126 1.37493 0.84300 0.78594 0.79949 0.72226 1.16634 1.18374 1.19633 1.20996 0.97489 0.95627 0.97573 0.91913 0.91551 0.93207 0.90611 0.93062 0.91534 0.91947 0.83914 0.83168 0.90644 0.88545 0.87920 0.90673 0.90552 0.90459 0.90978 0.91623 0.90561 0.90857 0.91854 0.93531 0.92708 0.91946 0.93280 0.91624 0.92801 0.93461 0.92312 0.90379 0.77567 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.19 9.01 71.98 0.65 0.84 16 2 C -0.06 -0.01 3.09 -11.54 -0.04 -0.04 16 3 C -0.14 0.21 9.01 71.98 0.65 0.86 16 4 C -0.11 -0.33 4.78 -19.85 -0.09 -0.42 16 5 C -0.07 -0.06 8.70 22.25 0.19 0.13 16 6 C -0.21 -0.19 9.04 22.37 0.20 0.01 16 7 C 0.13 0.53 6.62 22.51 0.15 0.68 16 8 O -0.32 -0.81 9.01 -87.75 -0.79 -1.60 16 9 C 0.05 -0.17 5.12 71.98 0.37 0.19 16 10 C 0.07 -0.36 5.51 71.98 0.40 0.04 16 11 O -0.64 0.31 8.52 -144.34 -1.23 -0.92 16 12 Si 1.32 -4.06 8.45 68.60 0.58 -3.48 16 13 C -0.52 2.02 8.50 113.37 0.96 2.98 16 14 C -0.52 0.97 8.50 113.37 0.96 1.94 16 15 C -0.39 0.05 0.53 -10.79 -0.01 0.04 16 16 C -0.14 -0.09 7.85 71.98 0.56 0.48 16 17 C -0.14 0.14 7.85 71.98 0.56 0.71 16 18 C -0.14 -0.26 7.84 71.98 0.56 0.31 16 19 C -0.16 -0.94 5.28 -19.77 -0.10 -1.05 16 20 C -0.08 -0.47 2.33 71.24 0.17 -0.31 16 21 O -0.55 -3.76 12.65 -148.98 -1.89 -5.64 16 22 Si 1.03 5.04 25.74 68.60 1.77 6.81 16 23 H -0.24 -0.89 7.11 99.48 0.71 -0.18 16 24 H -0.26 -1.48 6.74 99.48 0.67 -0.81 16 25 H -0.27 -1.89 7.11 99.48 0.71 -1.19 16 26 C -0.10 -0.52 8.28 22.25 0.18 -0.34 16 27 H 0.06 -0.15 7.38 -2.39 -0.02 -0.17 16 28 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.08 0.02 7.87 -2.38 -0.02 0.00 16 31 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.06 -0.16 7.38 -2.38 -0.02 -0.17 16 34 H 0.14 -0.45 7.09 -2.91 -0.02 -0.47 16 35 H 0.15 -0.62 6.30 -2.91 -0.02 -0.64 16 36 H 0.08 -0.30 7.66 -2.38 -0.02 -0.31 16 37 H 0.10 -0.79 7.66 -2.39 -0.02 -0.81 16 38 H 0.10 -1.05 7.21 -2.39 -0.02 -1.07 16 39 H 0.08 -0.49 7.21 -2.39 -0.02 -0.50 16 40 H 0.08 -0.44 7.48 -2.38 -0.02 -0.46 16 41 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 42 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 43 H 0.06 0.00 7.79 -2.39 -0.02 -0.01 16 44 H 0.08 -0.18 7.79 -2.39 -0.02 -0.20 16 45 H 0.07 -0.24 7.48 -2.39 -0.02 -0.26 16 46 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 47 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 48 H 0.05 0.08 7.97 -2.39 -0.02 0.07 16 49 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 50 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 51 H 0.06 -0.20 7.79 -2.39 -0.02 -0.21 16 52 H 0.05 0.17 7.96 -2.39 -0.02 0.15 16 53 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 54 H 0.06 0.05 7.80 -2.39 -0.02 0.03 16 55 H 0.08 0.39 7.83 -2.39 -0.02 0.37 16 56 H 0.38 0.89 8.61 -74.05 -0.64 0.25 16 57 H 0.13 0.51 4.77 -2.91 -0.01 0.49 16 Total: 0.00 -10.68 440.36 5.67 -5.01 By element: Atomic # 1 Polarization: -8.11 SS G_CDS: 0.89 Total: -7.22 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.34 Total: 7.05 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -3.91 Total: -8.17 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: 2.35 Total: 3.33 kcal Total: -10.68 5.67 -5.01 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13942222_10264010.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.463 kcal (2) G-P(sol) polarization free energy of solvation -10.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds