Wall clock time and date at job start Mon Mar 8 2021 13:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46977 * 2 1 4 4 C 1.50706 * 109.47082 * 119.99730 * 2 1 3 5 5 C 1.38249 * 119.94008 * 119.97684 * 4 2 1 6 6 C 1.38172 * 120.04881 * 179.69929 * 5 4 2 7 7 C 1.50698 * 120.02497 * 180.29680 * 6 5 4 8 8 O 1.42896 * 109.47594 * 255.28033 * 7 6 5 9 9 Si 1.86299 * 109.47088 * 15.28344 * 7 6 5 10 10 C 1.38712 * 119.94436 * 0.58305 * 6 5 4 11 11 O 1.35901 * 120.05375 * 179.72125 * 10 6 5 12 12 C 1.42903 * 117.00064 * 179.71820 * 11 10 6 13 13 C 1.52990 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.09000 * 112.90908 * 43.75570 * 13 12 11 15 15 C 1.53786 * 113.61464 * 175.00198 * 13 12 11 16 16 C 1.53781 * 87.17350 * 140.02626 * 15 13 12 17 17 H 1.08999 * 113.61567 * 89.07405 * 16 15 13 18 18 O 1.42897 * 113.61404 * 219.97824 * 16 15 13 19 19 C 1.42899 * 114.00083 * 210.00015 * 18 16 15 20 20 C 1.52995 * 109.47121 * 59.99730 * 19 18 16 21 21 C 1.52995 * 109.47392 * 180.02562 * 19 18 16 22 22 C 1.53002 * 109.47054 * 300.00199 * 19 18 16 23 23 C 1.53781 * 87.08070 * 334.52830 * 16 15 13 24 24 C 1.38752 * 119.88815 * 359.44075 * 10 6 5 25 25 C 1.38122 * 119.94755 * 0.28042 * 24 10 6 26 26 H 1.09004 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47103 * 299.99804 * 1 2 3 28 28 H 1.08995 * 109.47019 * 60.00491 * 1 2 3 29 29 H 1.08996 * 109.47088 * 239.99755 * 2 1 3 30 30 H 1.09006 * 109.47073 * 179.97438 * 3 2 1 31 31 H 1.09008 * 109.46998 * 299.99806 * 3 2 1 32 32 H 1.08996 * 109.47412 * 59.99953 * 3 2 1 33 33 H 1.07996 * 119.97540 * 0.02562 * 5 4 2 34 34 H 1.09004 * 109.47003 * 135.27703 * 7 6 5 35 35 H 0.96696 * 114.00092 * 59.99816 * 8 7 6 36 36 H 1.48508 * 110.00123 * 179.97438 * 9 7 6 37 37 H 1.48502 * 109.99905 * 301.31412 * 9 7 6 38 38 H 1.09007 * 109.46427 * 60.00114 * 12 11 10 39 39 H 1.08994 * 109.47177 * 300.00422 * 12 11 10 40 40 H 1.09002 * 113.61357 * 25.43543 * 15 13 12 41 41 H 1.09002 * 113.61608 * 254.61705 * 15 13 12 42 42 H 1.09005 * 109.46889 * 60.00217 * 20 19 18 43 43 H 1.09006 * 109.47235 * 179.97438 * 20 19 18 44 44 H 1.08996 * 109.47816 * 300.00195 * 20 19 18 45 45 H 1.08992 * 109.47372 * 59.99697 * 21 19 18 46 46 H 1.08998 * 109.47323 * 180.02562 * 21 19 18 47 47 H 1.09005 * 109.46777 * 299.99880 * 21 19 18 48 48 H 1.09002 * 109.47440 * 59.99753 * 22 19 18 49 49 H 1.09000 * 109.47397 * 180.02562 * 22 19 18 50 50 H 1.09000 * 109.47214 * 299.99695 * 22 19 18 51 51 H 1.09005 * 113.61471 * 139.98321 * 23 16 15 52 52 H 1.08996 * 113.61178 * 270.79663 * 23 16 15 53 53 H 1.07998 * 120.02519 * 180.25973 * 24 10 6 54 54 H 1.08000 * 119.97360 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.8267 -1.8346 1.1023 6 6 3.2936 -2.4840 2.2290 7 6 4.1650 -3.7055 2.0886 8 8 3.3991 -4.8741 2.3882 9 14 4.8057 -3.8138 0.3426 10 6 2.9548 -2.0142 3.4894 11 8 3.4081 -2.6545 4.5990 12 6 3.0246 -2.1112 5.8638 13 6 3.6245 -2.9599 6.9865 14 1 4.6650 -3.2293 6.8051 15 6 3.3720 -2.3895 8.3922 16 6 3.1335 -3.8368 8.8538 17 1 4.0399 -4.3455 9.1818 18 8 2.0537 -3.9716 9.7800 19 6 2.2110 -5.0512 10.7030 20 6 3.4854 -4.8397 11.5227 21 6 1.0031 -5.1006 11.6407 22 6 2.3128 -6.3695 9.9332 23 6 2.7416 -4.1525 7.4006 24 6 2.1570 -0.8859 3.6153 25 6 1.6975 -0.2369 2.4859 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.0868 -2.2024 0.1208 34 1 5.0047 -3.6342 2.7799 35 1 2.6339 -5.0016 1.8109 36 1 5.6671 -5.0141 0.1912 37 1 3.6701 -3.8794 -0.6120 38 1 1.9376 -2.1157 5.9465 39 1 3.3909 -1.0880 5.9459 40 1 2.4848 -1.7593 8.4548 41 1 4.2517 -1.9276 8.8404 42 1 3.4129 -3.9005 12.0711 43 1 3.6052 -5.6630 12.2271 44 1 4.3458 -4.8048 10.8545 45 1 0.0955 -5.2515 11.0564 46 1 1.1233 -5.9238 12.3449 47 1 0.9303 -4.1614 12.1891 48 1 3.1731 -6.3346 9.2648 49 1 2.4323 -7.1931 10.6371 50 1 1.4049 -6.5202 9.3491 51 1 3.1130 -5.1144 7.0473 52 1 1.6817 -4.0058 7.1926 53 1 1.8953 -0.5158 4.5955 54 1 1.0762 0.6411 2.5834 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_13942222_14598384.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:09:12 Heat of formation + Delta-G solvation = -74.368366 kcal Electronic energy + Delta-G solvation = -29751.618493 eV Core-core repulsion = 25849.020592 eV Total energy + Delta-G solvation = -3902.597902 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.218 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.59587 -40.85649 -39.29138 -38.16056 -37.91441 -35.60260 -33.92213 -32.64903 -30.59245 -29.18643 -28.38568 -28.27058 -27.94966 -26.73627 -26.61418 -24.43517 -23.70912 -22.66904 -20.84864 -20.78533 -20.55878 -19.25474 -18.18298 -17.72526 -17.17456 -16.97175 -16.60426 -16.55143 -16.01915 -15.96422 -15.65539 -15.61941 -15.26972 -14.80238 -14.56252 -14.49444 -14.39793 -14.27649 -14.09014 -13.64499 -13.48775 -13.44675 -13.31326 -13.19283 -13.07695 -12.94530 -12.80898 -12.77895 -12.67985 -12.44831 -12.31293 -12.12768 -11.99028 -11.94429 -11.76334 -11.70620 -11.52900 -11.44838 -11.35687 -11.18877 -10.53433 -10.39429 -9.98821 -9.03283 -4.95155 0.22298 0.39926 1.29115 1.55041 1.91380 2.13249 2.63678 2.72778 3.42477 3.45096 3.54095 3.59673 3.73910 3.74935 3.80697 3.86080 3.88475 3.95511 4.04823 4.07985 4.14347 4.15421 4.23693 4.33837 4.35191 4.40490 4.49929 4.51816 4.54728 4.59072 4.64384 4.71118 4.74353 4.75031 4.75616 4.82555 4.83228 4.86875 4.88856 4.90963 4.98014 5.02721 5.06706 5.09600 5.11929 5.15039 5.28331 5.29041 5.30062 5.32221 5.35990 5.39364 5.42700 5.67251 5.78721 6.38006 6.42614 6.50120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.112 4.112 5 C -0.087 4.087 6 C -0.158 4.158 7 C -0.073 4.073 8 O -0.546 6.546 9 Si 0.771 3.229 10 C 0.134 3.866 11 O -0.319 6.319 12 C 0.071 3.929 13 C -0.102 4.102 14 H 0.104 0.896 15 C -0.119 4.119 16 C 0.061 3.939 17 H 0.100 0.900 18 O -0.381 6.381 19 C 0.098 3.902 20 C -0.176 4.176 21 C -0.139 4.139 22 C -0.174 4.174 23 C -0.148 4.148 24 C -0.212 4.212 25 C -0.070 4.070 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.381 0.619 36 H -0.301 1.301 37 H -0.272 1.272 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.076 0.924 50 H 0.054 0.946 51 H 0.064 0.936 52 H 0.078 0.922 53 H 0.140 0.860 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 3.490 0.131 3.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.112 4.112 5 C -0.104 4.104 6 C -0.159 4.159 7 C -0.182 4.182 8 O -0.354 6.354 9 Si 0.675 3.325 10 C 0.088 3.912 11 O -0.233 6.233 12 C -0.004 4.004 13 C -0.121 4.121 14 H 0.123 0.877 15 C -0.157 4.157 16 C 0.003 3.997 17 H 0.117 0.883 18 O -0.301 6.301 19 C 0.059 3.941 20 C -0.234 4.234 21 C -0.196 4.196 22 C -0.232 4.232 23 C -0.186 4.186 24 C -0.231 4.231 25 C -0.088 4.088 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.229 0.771 36 H -0.230 1.230 37 H -0.198 1.198 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.073 0.927 51 H 0.083 0.917 52 H 0.096 0.904 53 H 0.157 0.843 54 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.140 2.913 -0.086 3.129 hybrid contribution -1.058 -0.822 0.433 1.408 sum 0.082 2.091 0.347 2.121 Atomic orbital electron populations 1.21875 0.94199 1.01688 1.02491 1.20121 0.96004 0.96442 0.94651 1.21863 1.01353 0.94498 1.02394 1.19916 0.99458 0.96368 0.95455 1.21042 0.96648 0.95163 0.97585 1.19643 1.04807 1.00486 0.90933 1.25093 0.96036 0.82718 1.14323 1.86601 1.44322 1.43958 1.60480 0.94063 0.80828 0.85485 0.72121 1.18977 0.93878 0.91635 0.86734 1.86113 1.70598 1.53292 1.13258 1.22892 0.99441 0.97827 0.80263 1.22293 1.00681 0.96539 0.92566 0.87736 1.23181 1.03191 0.96205 0.93097 1.23648 0.90796 0.97460 0.87750 0.88272 1.88006 1.44270 1.51515 1.46260 1.21680 0.96497 0.86578 0.89322 1.22444 0.97048 1.03180 1.00690 1.21790 0.96330 1.03009 0.98488 1.22449 1.02195 0.97538 1.00977 1.23606 1.00099 0.98576 0.96279 1.21464 1.03124 0.97633 1.00834 1.21032 0.97600 0.99067 0.91110 0.93305 0.92348 0.91519 0.89907 0.92379 0.91629 0.92419 0.83936 0.87425 0.77050 1.22964 1.19808 0.91860 0.90534 0.89059 0.89167 0.91951 0.90390 0.91912 0.92508 0.89707 0.92091 0.92340 0.90481 0.92654 0.91686 0.90363 0.84262 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.32 9.01 71.98 0.65 0.97 16 2 C -0.05 0.11 3.09 -11.54 -0.04 0.07 16 3 C -0.14 0.48 9.00 71.98 0.65 1.12 16 4 C -0.11 -0.10 4.78 -19.85 -0.09 -0.19 16 5 C -0.09 -0.15 8.28 22.26 0.18 0.04 16 6 C -0.16 -0.69 5.27 -19.77 -0.10 -0.79 16 7 C -0.07 -0.32 2.38 71.24 0.17 -0.15 16 8 O -0.55 -4.14 12.88 -148.98 -1.92 -6.06 16 9 Si 0.77 0.43 30.26 68.60 2.08 2.50 16 10 C 0.13 0.77 6.66 22.51 0.15 0.92 16 11 O -0.32 -2.16 9.47 -92.43 -0.88 -3.03 16 12 C 0.07 0.11 4.58 71.98 0.33 0.44 16 13 C -0.10 -0.06 4.02 -10.18 -0.04 -0.10 16 14 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 15 C -0.12 0.10 7.46 31.12 0.23 0.33 16 16 C 0.06 0.09 2.82 31.12 0.09 0.18 16 17 H 0.10 -0.03 5.55 -2.39 -0.01 -0.05 16 18 O -0.38 -1.91 10.00 -148.98 -1.49 -3.40 16 19 C 0.10 0.16 1.11 -10.80 -0.01 0.14 16 20 C -0.18 0.16 8.38 71.98 0.60 0.76 16 21 C -0.14 -0.07 8.84 71.98 0.64 0.56 16 22 C -0.17 -0.12 8.38 71.98 0.60 0.48 16 23 C -0.15 -0.42 7.47 31.21 0.23 -0.19 16 24 C -0.21 -0.57 9.04 22.36 0.20 -0.37 16 25 C -0.07 -0.07 8.70 22.25 0.19 0.13 16 26 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.06 -0.14 7.38 -2.39 -0.02 -0.16 16 28 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.08 -0.24 7.87 -2.39 -0.02 -0.26 16 30 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.06 -0.19 7.38 -2.39 -0.02 -0.21 16 33 H 0.14 -0.18 4.75 -2.91 -0.01 -0.20 16 34 H 0.11 0.56 7.83 -2.38 -0.02 0.54 16 35 H 0.38 0.61 8.70 -74.06 -0.64 -0.03 16 36 H -0.30 -2.38 7.11 99.48 0.71 -1.67 16 37 H -0.27 -0.66 6.68 99.48 0.66 0.01 16 38 H 0.06 0.09 7.37 -2.38 -0.02 0.07 16 39 H 0.08 -0.10 7.66 -2.39 -0.02 -0.11 16 40 H 0.09 -0.02 8.10 -2.39 -0.02 -0.04 16 41 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 43 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 44 H 0.06 -0.10 6.25 -2.39 -0.01 -0.11 16 45 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 48 H 0.06 0.04 7.02 -2.39 -0.02 0.03 16 49 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 52 H 0.08 0.40 7.91 -2.39 -0.02 0.38 16 53 H 0.14 -0.06 6.30 -2.91 -0.02 -0.08 16 54 H 0.14 -0.35 7.09 -2.91 -0.02 -0.37 16 Total: 0.00 -11.75 416.83 2.64 -9.11 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 0.21 Total: -3.48 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 4.63 Total: 4.36 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -4.28 Total: -12.49 kcal Atomic # 14 Polarization: 0.43 SS G_CDS: 2.08 Total: 2.50 kcal Total: -11.75 2.64 -9.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_13942222_14598384.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.256 kcal (2) G-P(sol) polarization free energy of solvation -11.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds