Wall clock time and date at job start Mon Mar 8 2021 13:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47287 * 2 1 4 4 C 1.38122 * 119.97652 * 265.25332 * 3 2 1 5 5 C 1.38756 * 119.94535 * 180.31714 * 4 3 2 6 6 O 1.35906 * 120.05238 * 179.68249 * 5 4 3 7 7 C 1.42903 * 116.99708 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46761 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46899 * 65.00554 * 8 7 6 10 10 Si 1.63096 * 113.99998 * 179.97438 * 9 8 7 11 11 C 1.86304 * 109.47083 * 299.99999 * 10 9 8 12 12 C 1.86307 * 109.47199 * 59.99409 * 10 9 8 13 13 C 1.86297 * 109.47269 * 179.97438 * 10 9 8 14 14 C 1.53000 * 109.47155 * 60.00269 * 13 10 9 15 15 C 1.53007 * 109.46928 * 179.97438 * 13 10 9 16 16 C 1.52992 * 109.47204 * 300.00038 * 13 10 9 17 17 C 1.38702 * 119.88952 * 359.69672 * 5 4 3 18 18 C 1.38165 * 119.94596 * 0.02562 * 17 5 4 19 19 C 1.38247 * 120.05320 * 0.02562 * 18 17 5 20 20 C 1.50701 * 119.94394 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47079 * 255.00120 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.99615 * 20 19 18 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 H 1.09004 * 109.47028 * 60.00052 * 1 2 3 27 27 H 1.08996 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47664 * 300.00225 * 1 2 3 29 29 H 1.08992 * 109.47392 * 239.99962 * 2 1 3 30 30 H 1.09004 * 109.47028 * 119.99948 * 2 1 3 31 31 H 1.08005 * 120.02790 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46974 * 299.99821 * 7 6 5 33 33 H 1.09002 * 109.46776 * 60.00057 * 7 6 5 34 34 H 1.09000 * 109.46438 * 185.00061 * 8 7 6 35 35 H 1.08998 * 109.47435 * 305.00365 * 8 7 6 36 36 H 1.08995 * 109.47132 * 59.99659 * 11 10 9 37 37 H 1.08999 * 109.47091 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46686 * 299.99436 * 11 10 9 39 39 H 1.09007 * 109.46664 * 60.00303 * 12 10 9 40 40 H 1.08999 * 109.47276 * 180.02562 * 12 10 9 41 41 H 1.08995 * 109.47282 * 300.00504 * 12 10 9 42 42 H 1.08998 * 109.47242 * 59.99822 * 14 13 10 43 43 H 1.08995 * 109.47238 * 179.97438 * 14 13 10 44 44 H 1.08999 * 109.46890 * 299.99953 * 14 13 10 45 45 H 1.08997 * 109.47399 * 59.99925 * 15 13 10 46 46 H 1.09008 * 109.46843 * 180.02562 * 15 13 10 47 47 H 1.09002 * 109.46867 * 299.99386 * 15 13 10 48 48 H 1.08999 * 109.47047 * 59.99920 * 16 13 10 49 49 H 1.09001 * 109.47396 * 179.97438 * 16 13 10 50 50 H 1.09004 * 109.47289 * 299.99423 * 16 13 10 51 51 H 1.08000 * 120.02732 * 179.97438 * 17 5 4 52 52 H 1.08000 * 119.97397 * 179.97438 * 18 17 5 53 53 H 1.09001 * 109.47380 * 134.99517 * 20 19 18 54 54 H 0.96696 * 114.00435 * 59.99627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3557 2.0384 -1.1923 5 6 2.8244 3.3444 -1.1911 6 8 3.1494 3.9520 -2.3625 7 6 3.6259 5.2971 -2.2852 8 6 3.9386 5.8089 -3.6927 9 8 2.7308 5.8788 -4.4534 10 14 2.9382 6.4148 -5.9797 11 6 3.6644 8.1301 -5.9423 12 6 4.0946 5.2707 -6.8879 13 6 1.2929 6.4552 -6.8527 14 6 0.3429 7.3946 -6.1071 15 6 1.4875 6.9587 -8.2844 16 6 0.6972 5.0464 -6.8834 17 6 2.9611 4.0285 0.0077 18 6 2.6308 3.4083 1.1973 19 6 2.1650 2.1066 1.1935 20 6 1.8060 1.4323 2.4925 21 8 2.8255 0.4930 2.8392 22 14 1.6586 2.7133 3.8372 23 1 0.5992 3.6896 3.4770 24 1 2.9544 3.4227 3.9893 25 1 1.3055 2.0487 5.1174 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2491 1.5034 -2.1245 32 1 2.8619 5.9275 -1.8303 33 1 4.5309 5.3276 -1.6784 34 1 4.3849 6.8012 -3.6276 35 1 4.6362 5.1280 -4.1804 36 1 4.6270 8.1060 -5.4317 37 1 3.8034 8.4881 -6.9624 38 1 2.9878 8.7995 -5.4110 39 1 3.6697 4.2671 -6.9099 40 1 4.2336 5.6292 -7.9079 41 1 5.0572 5.2466 -6.3773 42 1 0.7674 8.3983 -6.0851 43 1 -0.6195 7.4186 -6.6180 44 1 0.2043 7.0364 -5.0870 45 1 2.1645 6.2899 -8.8159 46 1 0.5247 6.9827 -8.7950 47 1 1.9116 7.9625 -8.2620 48 1 0.5586 4.6882 -5.8634 49 1 -0.2657 5.0701 -7.3938 50 1 1.3740 4.3772 -7.4148 51 1 3.3261 5.0450 0.0114 52 1 2.7374 3.9404 2.1311 53 1 0.8549 0.9116 2.3809 54 1 3.7008 0.8873 2.9548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_10264010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:21:37 Heat of formation + Delta-G solvation = -160.130682 kcal Electronic energy + Delta-G solvation = -28318.456878 eV Core-core repulsion = 24571.234700 eV Total energy + Delta-G solvation = -3747.222178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.34810 -39.58553 -37.92077 -37.03335 -36.84437 -34.78717 -32.32200 -30.56010 -30.29572 -29.40439 -29.11602 -27.87486 -27.39975 -26.41745 -25.11031 -23.74507 -22.86408 -21.40685 -20.42810 -18.87512 -18.35463 -18.11471 -17.27717 -16.75120 -16.48577 -16.22066 -16.02602 -15.73755 -15.54837 -15.34597 -15.01824 -14.87709 -14.74098 -14.56986 -14.42778 -14.06787 -14.02691 -13.86536 -13.60221 -13.52428 -13.45561 -13.27928 -13.01633 -12.94707 -12.93461 -12.90617 -12.52554 -12.41250 -12.22462 -12.08269 -12.01072 -11.92273 -11.79943 -11.72909 -11.70244 -11.57533 -11.37396 -11.28216 -10.40971 -10.31882 -10.09172 -9.74135 -9.05701 0.37774 0.40856 1.18752 1.39832 1.41860 1.54347 1.70650 1.93067 2.01877 2.18982 2.39555 2.71844 3.54251 3.68701 3.76961 3.89649 3.91755 3.96458 4.10087 4.11001 4.13309 4.16395 4.23496 4.27335 4.41568 4.46262 4.48796 4.56565 4.60593 4.62449 4.66721 4.69540 4.70175 4.72404 4.79586 4.82749 4.85034 4.99042 5.00770 5.09485 5.10224 5.12258 5.15925 5.18172 5.29666 5.32344 5.33880 5.39330 5.40438 5.42712 5.48681 5.50298 5.57691 5.70203 5.82866 6.48915 6.59860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.010 4.010 4 C -0.152 4.152 5 C 0.143 3.857 6 O -0.302 6.302 7 C 0.056 3.944 8 C 0.087 3.913 9 O -0.618 6.618 10 Si 1.286 2.714 11 C -0.512 4.512 12 C -0.511 4.511 13 C -0.374 4.374 14 C -0.134 4.134 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.212 4.212 18 C -0.083 4.083 19 C -0.160 4.160 20 C -0.074 4.074 21 O -0.538 6.538 22 Si 0.945 3.055 23 H -0.250 1.250 24 H -0.253 1.253 25 H -0.254 1.254 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.129 0.871 52 H 0.124 0.876 53 H 0.116 0.884 54 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 1.954 0.005 2.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.011 4.011 4 C -0.170 4.170 5 C 0.097 3.903 6 O -0.216 6.216 7 C -0.019 4.019 8 C 0.011 3.989 9 O -0.578 6.578 10 Si 1.417 2.583 11 C -0.614 4.614 12 C -0.612 4.612 13 C -0.417 4.417 14 C -0.191 4.191 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.231 4.231 18 C -0.101 4.101 19 C -0.160 4.160 20 C -0.185 4.185 21 O -0.343 6.343 22 Si 0.768 3.232 23 H -0.173 1.173 24 H -0.177 1.177 25 H -0.178 1.178 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.147 0.853 52 H 0.142 0.858 53 H 0.134 0.866 54 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.938 2.006 0.609 2.297 hybrid contribution 0.786 0.656 -0.766 1.278 sum 1.724 2.662 -0.157 3.175 Atomic orbital electron populations 1.21760 0.94481 1.02105 1.02177 1.20682 0.96312 0.92079 1.04067 1.19529 0.94610 0.95819 0.91106 1.20365 1.04930 0.92953 0.98769 1.19023 0.94200 0.92339 0.84733 1.86150 1.79402 1.27864 1.28137 1.23014 0.99641 0.81780 0.97459 1.22084 0.85531 1.00308 0.90983 1.85409 1.38203 1.87407 1.46744 0.76740 0.64451 0.63353 0.53711 1.27047 1.07295 1.22190 1.04835 1.27027 1.11983 1.12508 1.09724 1.25769 1.15127 0.98319 1.02534 1.21510 0.99057 0.98401 1.00135 1.21559 1.02109 1.00671 0.95039 1.21505 1.00738 0.94750 1.02112 1.21140 1.08684 1.01200 0.92075 1.20871 0.97180 0.94204 0.97852 1.19980 1.05630 0.94774 0.95647 1.24899 0.94788 1.00107 0.98717 1.86497 1.20312 1.35748 1.91714 0.85774 0.81464 0.77595 0.78364 1.17320 1.17718 1.17789 0.92470 0.92008 0.92495 0.90898 0.89029 0.84983 0.90712 0.90668 0.90455 0.91417 0.91520 0.90628 0.90855 0.90755 0.90758 0.91526 0.92750 0.92791 0.92187 0.92507 0.92500 0.92554 0.92069 0.92837 0.92699 0.85278 0.85849 0.86614 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.02 9.78 37.15 0.36 0.38 16 2 C -0.09 -0.05 5.43 -27.89 -0.15 -0.20 16 3 C -0.01 -0.02 5.13 -104.65 -0.54 -0.55 16 4 C -0.15 -0.34 9.62 -39.43 -0.38 -0.71 16 5 C 0.14 0.33 6.69 -39.22 -0.26 0.07 16 6 O -0.30 -0.71 10.10 -24.30 -0.25 -0.95 16 7 C 0.06 -0.04 5.12 37.16 0.19 0.15 16 8 C 0.09 -0.11 5.50 37.16 0.20 0.10 16 9 O -0.62 -0.28 8.52 -40.08 -0.34 -0.63 16 10 Si 1.29 -1.37 8.45 -169.99 -1.44 -2.80 16 11 C -0.51 0.60 8.50 101.05 0.86 1.46 16 12 C -0.51 0.28 8.50 101.05 0.86 1.14 16 13 C -0.37 0.04 0.53 -90.62 -0.05 -0.01 16 14 C -0.13 -0.03 7.85 37.16 0.29 0.26 16 15 C -0.14 0.07 7.85 37.16 0.29 0.36 16 16 C -0.13 -0.08 7.85 37.15 0.29 0.22 16 17 C -0.21 -0.23 9.04 -39.44 -0.36 -0.59 16 18 C -0.08 -0.08 8.65 -39.61 -0.34 -0.42 16 19 C -0.16 -0.18 5.26 -104.60 -0.55 -0.73 16 20 C -0.07 0.00 1.92 36.01 0.07 0.07 16 21 O -0.54 -0.16 11.89 -35.23 -0.42 -0.58 16 22 Si 0.94 -0.18 25.49 -169.99 -4.33 -4.51 16 23 H -0.25 -0.17 7.11 56.52 0.40 0.24 16 24 H -0.25 0.10 6.73 56.52 0.38 0.48 16 25 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 26 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.06 -0.02 6.67 -51.93 -0.35 -0.36 16 29 H 0.07 0.00 8.05 -51.93 -0.42 -0.42 16 30 H 0.09 0.08 6.42 -51.93 -0.33 -0.25 16 31 H 0.13 0.20 8.06 -52.48 -0.42 -0.22 16 32 H 0.07 -0.08 7.66 -51.93 -0.40 -0.48 16 33 H 0.08 -0.21 7.66 -51.93 -0.40 -0.60 16 34 H 0.08 -0.29 7.21 -51.93 -0.37 -0.66 16 35 H 0.07 -0.13 7.21 -51.93 -0.37 -0.51 16 36 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 37 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 38 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 39 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 40 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 41 H 0.07 -0.06 7.48 -51.93 -0.39 -0.45 16 42 H 0.05 -0.03 7.80 -51.93 -0.40 -0.43 16 43 H 0.05 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.06 0.04 7.96 -51.93 -0.41 -0.38 16 45 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 46 H 0.06 -0.01 8.14 -51.92 -0.42 -0.43 16 47 H 0.06 -0.07 7.79 -51.93 -0.40 -0.47 16 48 H 0.06 0.07 7.96 -51.93 -0.41 -0.34 16 49 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 50 H 0.05 0.00 7.79 -51.93 -0.40 -0.40 16 51 H 0.13 -0.13 6.30 -52.49 -0.33 -0.46 16 52 H 0.12 -0.07 4.88 -52.49 -0.26 -0.32 16 53 H 0.12 -0.05 5.91 -51.93 -0.31 -0.36 16 54 H 0.38 -1.01 8.70 45.56 0.40 -0.61 16 LS Contribution 417.28 15.07 6.29 6.29 Total: 0.00 -5.00 417.28 -9.03 -14.02 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -9.33 Total: -11.83 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 0.79 Total: 0.99 kcal Atomic # 8 Polarization: -1.15 SS G_CDS: -1.01 Total: -2.16 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -5.77 Total: -7.32 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -5.00 -9.03 -14.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_10264010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.106 kcal (2) G-P(sol) polarization free energy of solvation -4.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds