Wall clock time and date at job start Mon Mar 8 2021 13:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47287 * 2 1 4 4 C 1.38122 * 119.97652 * 265.25332 * 3 2 1 5 5 C 1.38756 * 119.94535 * 180.31714 * 4 3 2 6 6 O 1.35906 * 120.05238 * 179.68249 * 5 4 3 7 7 C 1.42903 * 116.99708 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46761 * 179.97438 * 7 6 5 9 9 O 1.42901 * 109.46899 * 65.00554 * 8 7 6 10 10 Si 1.63096 * 113.99998 * 179.97438 * 9 8 7 11 11 C 1.86304 * 109.47083 * 299.99999 * 10 9 8 12 12 C 1.86307 * 109.47199 * 59.99409 * 10 9 8 13 13 C 1.86297 * 109.47269 * 179.97438 * 10 9 8 14 14 C 1.53000 * 109.47155 * 60.00269 * 13 10 9 15 15 C 1.53007 * 109.46928 * 179.97438 * 13 10 9 16 16 C 1.52992 * 109.47204 * 300.00038 * 13 10 9 17 17 C 1.38702 * 119.88952 * 359.69672 * 5 4 3 18 18 C 1.38165 * 119.94596 * 0.02562 * 17 5 4 19 19 C 1.38247 * 120.05320 * 0.02562 * 18 17 5 20 20 C 1.50701 * 119.94394 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47079 * 255.00120 * 20 19 18 22 22 Si 1.86301 * 109.47149 * 14.99615 * 20 19 18 23 23 H 1.48506 * 109.47302 * 59.99966 * 22 20 19 24 24 H 1.48503 * 109.47334 * 300.00099 * 22 20 19 25 25 H 1.48500 * 109.47376 * 180.02562 * 22 20 19 26 26 H 1.09004 * 109.47028 * 60.00052 * 1 2 3 27 27 H 1.08996 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47664 * 300.00225 * 1 2 3 29 29 H 1.08992 * 109.47392 * 239.99962 * 2 1 3 30 30 H 1.09004 * 109.47028 * 119.99948 * 2 1 3 31 31 H 1.08005 * 120.02790 * 359.97438 * 4 3 2 32 32 H 1.08998 * 109.46974 * 299.99821 * 7 6 5 33 33 H 1.09002 * 109.46776 * 60.00057 * 7 6 5 34 34 H 1.09000 * 109.46438 * 185.00061 * 8 7 6 35 35 H 1.08998 * 109.47435 * 305.00365 * 8 7 6 36 36 H 1.08995 * 109.47132 * 59.99659 * 11 10 9 37 37 H 1.08999 * 109.47091 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.46686 * 299.99436 * 11 10 9 39 39 H 1.09007 * 109.46664 * 60.00303 * 12 10 9 40 40 H 1.08999 * 109.47276 * 180.02562 * 12 10 9 41 41 H 1.08995 * 109.47282 * 300.00504 * 12 10 9 42 42 H 1.08998 * 109.47242 * 59.99822 * 14 13 10 43 43 H 1.08995 * 109.47238 * 179.97438 * 14 13 10 44 44 H 1.08999 * 109.46890 * 299.99953 * 14 13 10 45 45 H 1.08997 * 109.47399 * 59.99925 * 15 13 10 46 46 H 1.09008 * 109.46843 * 180.02562 * 15 13 10 47 47 H 1.09002 * 109.46867 * 299.99386 * 15 13 10 48 48 H 1.08999 * 109.47047 * 59.99920 * 16 13 10 49 49 H 1.09001 * 109.47396 * 179.97438 * 16 13 10 50 50 H 1.09004 * 109.47289 * 299.99423 * 16 13 10 51 51 H 1.08000 * 120.02732 * 179.97438 * 17 5 4 52 52 H 1.08000 * 119.97397 * 179.97438 * 18 17 5 53 53 H 1.09001 * 109.47380 * 134.99517 * 20 19 18 54 54 H 0.96696 * 114.00435 * 59.99627 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3557 2.0384 -1.1923 5 6 2.8244 3.3444 -1.1911 6 8 3.1494 3.9520 -2.3625 7 6 3.6259 5.2971 -2.2852 8 6 3.9386 5.8089 -3.6927 9 8 2.7308 5.8788 -4.4534 10 14 2.9382 6.4148 -5.9797 11 6 3.6644 8.1301 -5.9423 12 6 4.0946 5.2707 -6.8879 13 6 1.2929 6.4552 -6.8527 14 6 0.3429 7.3946 -6.1071 15 6 1.4875 6.9587 -8.2844 16 6 0.6972 5.0464 -6.8834 17 6 2.9611 4.0285 0.0077 18 6 2.6308 3.4083 1.1973 19 6 2.1650 2.1066 1.1935 20 6 1.8060 1.4323 2.4925 21 8 2.8255 0.4930 2.8392 22 14 1.6586 2.7133 3.8372 23 1 0.5992 3.6896 3.4770 24 1 2.9544 3.4227 3.9893 25 1 1.3055 2.0487 5.1174 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2491 1.5034 -2.1245 32 1 2.8619 5.9275 -1.8303 33 1 4.5309 5.3276 -1.6784 34 1 4.3849 6.8012 -3.6276 35 1 4.6362 5.1280 -4.1804 36 1 4.6270 8.1060 -5.4317 37 1 3.8034 8.4881 -6.9624 38 1 2.9878 8.7995 -5.4110 39 1 3.6697 4.2671 -6.9099 40 1 4.2336 5.6292 -7.9079 41 1 5.0572 5.2466 -6.3773 42 1 0.7674 8.3983 -6.0851 43 1 -0.6195 7.4186 -6.6180 44 1 0.2043 7.0364 -5.0870 45 1 2.1645 6.2899 -8.8159 46 1 0.5247 6.9827 -8.7950 47 1 1.9116 7.9625 -8.2620 48 1 0.5586 4.6882 -5.8634 49 1 -0.2657 5.0701 -7.3938 50 1 1.3740 4.3772 -7.4148 51 1 3.3261 5.0450 0.0114 52 1 2.7374 3.9404 2.1311 53 1 0.8549 0.9116 2.3809 54 1 3.7008 0.8873 2.9548 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_10264010.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:21:36 Heat of formation + Delta-G solvation = -150.865128 kcal Electronic energy + Delta-G solvation = -28318.055093 eV Core-core repulsion = 24571.234700 eV Total energy + Delta-G solvation = -3746.820393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.39051 -39.59477 -37.86269 -37.03785 -36.83523 -34.82113 -32.33901 -30.52294 -30.31266 -29.31984 -29.06809 -27.84559 -27.39100 -26.43494 -25.11651 -23.68722 -22.91237 -21.42587 -20.41897 -18.89765 -18.35479 -18.03453 -17.31122 -16.76216 -16.45729 -16.20354 -15.99114 -15.73724 -15.52039 -15.33842 -15.01089 -14.85917 -14.75953 -14.59525 -14.45544 -14.07266 -13.98942 -13.85932 -13.56039 -13.49590 -13.37197 -13.18008 -12.97541 -12.97075 -12.91403 -12.89265 -12.49587 -12.40781 -12.22338 -12.11081 -12.01970 -11.88578 -11.82139 -11.72496 -11.69627 -11.52312 -11.35136 -11.23422 -10.32099 -10.31508 -10.06067 -9.81753 -9.12407 0.30613 0.33118 1.20029 1.43228 1.52413 1.54179 1.78008 1.92145 2.13226 2.21976 2.47586 2.64877 3.59547 3.69367 3.78391 3.89449 3.99346 4.09221 4.11157 4.12247 4.15844 4.22415 4.30982 4.40833 4.41799 4.45887 4.49291 4.54912 4.64916 4.69167 4.73991 4.77294 4.78686 4.79637 4.80589 4.81676 4.82332 4.98596 4.98668 5.07902 5.08122 5.10578 5.13664 5.18963 5.28055 5.32799 5.32920 5.39395 5.39727 5.42396 5.48649 5.59151 5.64091 5.64453 5.78863 6.46065 6.75435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.018 4.018 4 C -0.169 4.169 5 C 0.130 3.870 6 O -0.322 6.322 7 C 0.047 3.953 8 C 0.075 3.925 9 O -0.639 6.639 10 Si 1.315 2.685 11 C -0.514 4.514 12 C -0.519 4.519 13 C -0.384 4.384 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.136 4.136 17 C -0.215 4.215 18 C -0.089 4.089 19 C -0.165 4.165 20 C -0.074 4.074 21 O -0.549 6.549 22 Si 0.977 3.023 23 H -0.262 1.262 24 H -0.245 1.245 25 H -0.274 1.274 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.058 0.942 51 H 0.149 0.851 52 H 0.139 0.861 53 H 0.118 0.882 54 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 2.885 0.413 3.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.019 4.019 4 C -0.187 4.187 5 C 0.084 3.916 6 O -0.236 6.236 7 C -0.028 4.028 8 C 0.000 4.000 9 O -0.599 6.599 10 Si 1.445 2.555 11 C -0.616 4.616 12 C -0.620 4.620 13 C -0.426 4.426 14 C -0.193 4.193 15 C -0.197 4.197 16 C -0.193 4.193 17 C -0.234 4.234 18 C -0.106 4.106 19 C -0.165 4.165 20 C -0.184 4.184 21 O -0.356 6.356 22 Si 0.801 3.199 23 H -0.186 1.186 24 H -0.169 1.169 25 H -0.200 1.200 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.167 0.833 52 H 0.156 0.844 53 H 0.135 0.865 54 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.935 2.932 1.000 3.653 hybrid contribution 0.469 0.351 -0.899 1.073 sum 2.404 3.283 0.102 4.071 Atomic orbital electron populations 1.21759 0.94077 1.02562 1.02043 1.20661 0.96641 0.91597 1.03943 1.19676 0.94711 0.96297 0.91180 1.20496 1.05739 0.93469 0.99010 1.19188 0.94603 0.92541 0.85284 1.86127 1.79672 1.29307 1.28448 1.23293 1.00583 0.80493 0.98420 1.22372 0.85161 1.01967 0.90522 1.85402 1.39262 1.87723 1.47464 0.76214 0.63124 0.63304 0.52854 1.27036 1.07776 1.21608 1.05209 1.27127 1.12494 1.12158 1.10236 1.25948 1.16033 0.97541 1.03120 1.21530 0.98992 0.99052 0.99725 1.21600 1.01984 1.01419 0.94712 1.21521 1.00706 0.95613 1.01466 1.21388 1.08302 1.02071 0.91631 1.21102 0.96845 0.94221 0.98469 1.20149 1.05467 0.95033 0.95865 1.24943 0.94891 1.00217 0.98350 1.86468 1.21186 1.36304 1.91654 0.85323 0.81165 0.76645 0.76753 1.18572 1.16896 1.19971 0.92966 0.91246 0.92255 0.90754 0.89333 0.85287 0.90530 0.88505 0.87678 0.90951 0.90542 0.90333 0.90923 0.91727 0.90385 0.90960 0.91774 0.93453 0.92815 0.91918 0.93222 0.91553 0.93006 0.93375 0.92299 0.83312 0.84388 0.86471 0.76365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.06 9.78 71.98 0.70 0.65 16 2 C -0.09 -0.16 5.43 29.84 0.16 0.00 16 3 C -0.02 -0.07 5.13 -19.88 -0.10 -0.18 16 4 C -0.17 -0.96 9.62 22.37 0.22 -0.75 16 5 C 0.13 0.69 6.69 22.50 0.15 0.84 16 6 O -0.32 -1.72 10.10 -87.85 -0.89 -2.61 16 7 C 0.05 -0.08 5.12 71.98 0.37 0.29 16 8 C 0.07 -0.24 5.50 71.98 0.40 0.16 16 9 O -0.64 -0.63 8.52 -144.34 -1.23 -1.86 16 10 Si 1.32 -3.04 8.45 68.60 0.58 -2.46 16 11 C -0.51 1.82 8.50 113.37 0.96 2.79 16 12 C -0.52 0.61 8.50 113.37 0.96 1.57 16 13 C -0.38 -0.13 0.53 -10.79 -0.01 -0.14 16 14 C -0.14 -0.15 7.85 71.98 0.56 0.42 16 15 C -0.14 0.12 7.85 71.98 0.56 0.69 16 16 C -0.14 -0.33 7.85 71.98 0.56 0.23 16 17 C -0.22 -0.42 9.04 22.36 0.20 -0.22 16 18 C -0.09 -0.13 8.65 22.25 0.19 0.06 16 19 C -0.16 -0.39 5.26 -19.85 -0.10 -0.50 16 20 C -0.07 0.00 1.92 71.24 0.14 0.13 16 21 O -0.55 -0.26 11.89 -148.98 -1.77 -2.03 16 22 Si 0.98 -0.69 25.49 68.60 1.75 1.06 16 23 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 24 H -0.25 0.51 6.73 99.48 0.67 1.18 16 25 H -0.27 -0.73 7.11 99.48 0.71 -0.02 16 26 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 27 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 28 H 0.06 -0.01 6.67 -2.38 -0.02 -0.03 16 29 H 0.07 0.08 8.05 -2.39 -0.02 0.06 16 30 H 0.09 0.21 6.42 -2.38 -0.02 0.20 16 31 H 0.13 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.08 -0.19 7.66 -2.39 -0.02 -0.20 16 33 H 0.10 -0.64 7.66 -2.39 -0.02 -0.66 16 34 H 0.11 -0.96 7.21 -2.39 -0.02 -0.98 16 35 H 0.07 -0.32 7.21 -2.39 -0.02 -0.34 16 36 H 0.08 -0.41 7.48 -2.39 -0.02 -0.43 16 37 H 0.08 -0.30 7.79 -2.39 -0.02 -0.32 16 38 H 0.07 -0.22 7.79 -2.38 -0.02 -0.24 16 39 H 0.06 0.05 7.79 -2.38 -0.02 0.04 16 40 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 41 H 0.07 -0.17 7.48 -2.39 -0.02 -0.19 16 42 H 0.06 -0.07 7.80 -2.39 -0.02 -0.09 16 43 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 45 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 46 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 47 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 48 H 0.05 0.21 7.96 -2.39 -0.02 0.19 16 49 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.06 0.07 7.79 -2.38 -0.02 0.05 16 51 H 0.15 -0.44 6.30 -2.91 -0.02 -0.46 16 52 H 0.14 -0.30 4.88 -2.91 -0.01 -0.31 16 53 H 0.12 -0.07 5.91 -2.39 -0.01 -0.09 16 54 H 0.39 -2.21 8.70 -74.06 -0.64 -2.86 16 Total: 0.00 -11.90 417.28 5.30 -6.59 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: 0.93 Total: -4.75 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.94 Total: 6.05 kcal Atomic # 8 Polarization: -2.61 SS G_CDS: -3.89 Total: -6.50 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.33 Total: -1.39 kcal Total: -11.90 5.30 -6.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_10264010.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.273 kcal (2) G-P(sol) polarization free energy of solvation -11.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds