Wall clock time and date at job start Mon Mar 8 2021 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47105 * 2 1 4 4 C 1.38250 * 119.96874 * 85.27947 * 3 2 1 5 5 C 1.50697 * 119.94428 * 359.97438 * 4 3 2 6 6 O 1.42896 * 109.47111 * 75.29630 * 5 4 3 7 7 Si 1.86299 * 109.47253 * 195.29768 * 5 4 3 8 8 C 1.38282 * 120.10863 * 180.27522 * 4 3 2 9 9 C 1.38123 * 120.05938 * 359.69766 * 8 4 3 10 10 C 1.38760 * 119.94204 * 0.02672 * 9 8 4 11 11 O 1.35891 * 120.05416 * 180.02562 * 10 9 8 12 12 C 1.42899 * 117.00395 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47427 * 179.97438 * 12 11 10 14 14 H 1.08998 * 112.84956 * 45.33085 * 13 12 11 15 15 C 1.53782 * 113.61616 * 176.52972 * 13 12 11 16 16 C 1.53780 * 87.08087 * 139.98086 * 15 13 12 17 17 H 1.09006 * 113.61254 * 89.11956 * 16 15 13 18 18 O 1.42896 * 113.61264 * 219.93431 * 16 15 13 19 19 C 1.53779 * 113.61431 * 274.13883 * 13 12 11 20 20 C 1.38161 * 119.97305 * 264.99792 * 3 2 1 21 21 H 1.08999 * 109.47024 * 300.00026 * 1 2 3 22 22 H 1.09005 * 109.46786 * 59.99318 * 1 2 3 23 23 H 1.08995 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46510 * 240.00679 * 2 1 3 25 25 H 1.08998 * 109.47098 * 120.00441 * 2 1 3 26 26 H 1.09003 * 109.47187 * 315.29680 * 5 4 3 27 27 H 0.96706 * 113.99917 * 179.97438 * 6 5 4 28 28 H 1.48499 * 110.00329 * 178.67917 * 7 5 4 29 29 H 1.48502 * 109.99678 * 300.00325 * 7 5 4 30 30 H 1.08006 * 119.97098 * 179.72383 * 8 4 3 31 31 H 1.07992 * 120.03265 * 180.02562 * 9 8 4 32 32 H 1.08999 * 109.47131 * 299.99853 * 12 11 10 33 33 H 1.09002 * 109.47126 * 60.00144 * 12 11 10 34 34 H 1.09003 * 113.60833 * 254.53213 * 15 13 12 35 35 H 1.09003 * 113.61574 * 25.34510 * 15 13 12 36 36 H 0.96706 * 114.00030 * 180.02562 * 18 16 15 37 37 H 1.09000 * 113.61770 * 334.56138 * 19 13 12 38 38 H 1.09002 * 113.61825 * 105.46876 * 19 13 12 39 39 H 1.08002 * 120.03267 * 0.03200 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1696 2.1048 1.1936 5 6 1.8161 1.4285 2.4930 6 8 2.8432 0.4977 2.8405 7 14 1.6581 2.7092 3.8368 8 6 2.6249 3.4105 1.1965 9 6 2.9496 4.0326 0.0068 10 6 2.8182 3.3464 -1.1920 11 8 3.1375 3.9561 -2.3637 12 6 3.6019 5.3053 -2.2876 13 6 3.9098 5.8190 -3.6955 14 1 3.1300 5.5725 -4.4160 15 6 4.3384 7.2955 -3.7326 16 6 5.3751 6.8864 -4.7921 17 1 4.9968 6.9314 -5.8134 18 8 6.6377 7.5378 -4.6389 19 6 5.3278 5.4743 -4.1806 20 6 2.3608 2.0368 -1.1923 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.8693 0.9000 2.3818 27 1 2.6818 0.0247 3.6684 28 1 1.2785 2.0585 5.1165 29 1 2.9425 3.4368 3.9983 30 1 2.7271 3.9442 2.1299 31 1 3.3055 5.0522 0.0096 32 1 2.8325 5.9293 -1.8330 33 1 4.5067 5.3445 -1.6810 34 1 3.5664 7.9647 -4.1126 35 1 4.7802 7.6455 -2.7996 36 1 7.2939 7.2849 -5.3027 37 1 6.0421 5.3251 -3.3709 38 1 5.3537 4.6754 -4.9218 39 1 2.2573 1.5008 -2.1241 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:15:09 Heat of formation + Delta-G solvation = -74.274413 kcal Electronic energy + Delta-G solvation = -19995.743688 eV Core-core repulsion = 16870.837955 eV Total energy + Delta-G solvation = -3124.905733 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42199 -40.42478 -39.11784 -37.32535 -36.05505 -34.78932 -32.20185 -30.41215 -29.35247 -26.82891 -26.26489 -24.97237 -23.54390 -22.80741 -21.29726 -20.65787 -18.71345 -18.56996 -18.49279 -17.46263 -16.97350 -16.76109 -16.32057 -15.89382 -15.66102 -15.29189 -14.95715 -14.54611 -14.41135 -14.08857 -13.95909 -13.91085 -13.59087 -13.52323 -12.97678 -12.91082 -12.67222 -12.37657 -12.16320 -12.11107 -11.92854 -11.86788 -11.62980 -11.48036 -11.25675 -10.80497 -10.38490 -9.73620 -9.06024 -4.96641 0.38951 0.41483 1.29957 1.58308 1.94314 2.12812 2.66850 3.18576 3.39858 3.44594 3.48839 3.70832 3.78883 3.81743 3.86286 3.99514 4.13017 4.14468 4.19951 4.21366 4.32918 4.38294 4.47978 4.52241 4.62241 4.66802 4.70119 4.70694 4.77737 4.90874 5.00042 5.05493 5.06365 5.15813 5.27738 5.31908 5.38825 5.41921 5.69399 5.81970 6.45225 6.49711 6.65169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.014 4.014 4 C -0.110 4.110 5 C -0.069 4.069 6 O -0.534 6.534 7 Si 0.680 3.320 8 C -0.073 4.073 9 C -0.211 4.211 10 C 0.141 3.859 11 O -0.312 6.312 12 C 0.071 3.929 13 C -0.109 4.109 14 H 0.106 0.894 15 C -0.120 4.120 16 C 0.076 3.924 17 H 0.085 0.915 18 O -0.560 6.560 19 C -0.164 4.164 20 C -0.152 4.152 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.377 0.623 28 H -0.261 1.261 29 H -0.256 1.256 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.380 0.620 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 0.697 -0.973 2.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.015 4.015 4 C -0.111 4.111 5 C -0.179 4.179 6 O -0.341 6.341 7 Si 0.582 3.418 8 C -0.090 4.090 9 C -0.229 4.229 10 C 0.096 3.904 11 O -0.225 6.225 12 C -0.004 4.004 13 C -0.128 4.128 14 H 0.124 0.876 15 C -0.157 4.157 16 C 0.017 3.983 17 H 0.102 0.898 18 O -0.366 6.366 19 C -0.201 4.201 20 C -0.171 4.171 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.225 0.775 28 H -0.186 1.186 29 H -0.181 1.181 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.452 1.412 -0.448 2.865 hybrid contribution 0.794 -1.139 0.053 1.389 sum -1.658 0.273 -0.396 1.726 Atomic orbital electron populations 1.21769 0.94356 1.02048 1.02349 1.20653 0.96318 0.92172 1.03773 1.19512 0.94969 0.95718 0.91270 1.18941 1.04869 0.94107 0.93133 1.24723 0.92896 0.98873 1.01411 1.86621 1.46618 1.56271 1.44601 0.95054 0.86478 0.82957 0.77348 1.20855 0.96152 0.94148 0.97871 1.21149 1.08510 1.01291 0.91980 1.18987 0.94442 0.92316 0.84699 1.86066 1.79856 1.28111 1.28495 1.22826 0.99114 0.80737 0.97758 1.22324 0.98142 0.96209 0.96083 0.87629 1.23060 0.97440 0.95109 1.00121 1.23330 0.84804 0.92005 0.98187 0.89752 1.86522 1.23277 1.69392 1.57399 1.23799 0.96539 0.98023 1.01770 1.20311 1.05197 0.92874 0.98675 0.92363 0.92324 0.92110 0.90851 0.89708 0.90674 0.77539 1.18635 1.18054 0.85367 0.85184 0.91472 0.91641 0.90081 0.88805 0.77188 0.89105 0.90746 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.09 9.78 37.16 0.36 0.45 16 2 C -0.09 -0.06 5.43 -27.88 -0.15 -0.21 16 3 C -0.01 -0.03 5.13 -104.65 -0.54 -0.57 16 4 C -0.11 -0.24 5.29 -104.60 -0.55 -0.79 16 5 C -0.07 -0.04 1.90 36.00 0.07 0.03 16 6 O -0.53 -0.80 11.91 -35.23 -0.42 -1.22 16 7 Si 0.68 -0.23 30.19 -169.99 -5.13 -5.37 16 8 C -0.07 -0.13 8.65 -39.61 -0.34 -0.48 16 9 C -0.21 -0.38 9.04 -39.43 -0.36 -0.74 16 10 C 0.14 0.39 6.69 -39.21 -0.26 0.12 16 11 O -0.31 -0.76 10.14 -19.40 -0.20 -0.96 16 12 C 0.07 0.00 4.57 37.16 0.17 0.17 16 13 C -0.11 0.08 4.00 -89.81 -0.36 -0.28 16 14 H 0.11 -0.10 8.14 -51.93 -0.42 -0.52 16 15 C -0.12 0.10 7.48 -25.92 -0.19 -0.09 16 16 C 0.08 -0.04 5.21 -25.83 -0.13 -0.18 16 17 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 18 O -0.56 -0.41 13.68 -35.23 -0.48 -0.89 16 19 C -0.16 0.07 7.48 -25.83 -0.19 -0.12 16 20 C -0.15 -0.39 9.62 -39.43 -0.38 -0.77 16 21 H 0.06 -0.06 6.70 -51.93 -0.35 -0.40 16 22 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 23 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.07 0.02 8.05 -51.93 -0.42 -0.40 16 25 H 0.08 0.09 6.43 -51.93 -0.33 -0.24 16 26 H 0.08 -0.08 5.91 -51.93 -0.31 -0.39 16 27 H 0.38 -0.92 8.74 45.56 0.40 -0.53 16 28 H -0.26 -0.39 7.11 56.52 0.40 0.01 16 29 H -0.26 -0.65 6.74 56.52 0.38 -0.27 16 30 H 0.13 0.07 4.89 -52.48 -0.26 -0.19 16 31 H 0.13 -0.01 6.30 -52.49 -0.33 -0.34 16 32 H 0.07 -0.07 7.66 -51.93 -0.40 -0.47 16 33 H 0.07 -0.01 7.39 -51.93 -0.38 -0.40 16 34 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 36 H 0.38 -1.22 9.12 45.56 0.42 -0.81 16 37 H 0.09 0.04 7.92 -51.93 -0.41 -0.38 16 38 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 39 H 0.13 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 314.15 15.07 4.73 4.73 Total: 0.00 -6.37 314.15 -9.33 -15.70 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: -4.97 Total: -8.54 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.86 Total: -3.45 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: -1.10 Total: -3.07 kcal Atomic # 14 Polarization: -0.23 SS G_CDS: -5.13 Total: -5.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -6.37 -9.33 -15.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.575 kcal (2) G-P(sol) polarization free energy of solvation -6.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds