Wall clock time and date at job start Mon Mar 8 2021 14:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47105 * 2 1 4 4 C 1.38250 * 119.96874 * 85.27947 * 3 2 1 5 5 C 1.50697 * 119.94428 * 359.97438 * 4 3 2 6 6 O 1.42896 * 109.47111 * 75.29630 * 5 4 3 7 7 Si 1.86299 * 109.47253 * 195.29768 * 5 4 3 8 8 C 1.38282 * 120.10863 * 180.27522 * 4 3 2 9 9 C 1.38123 * 120.05938 * 359.69766 * 8 4 3 10 10 C 1.38760 * 119.94204 * 0.02672 * 9 8 4 11 11 O 1.35891 * 120.05416 * 180.02562 * 10 9 8 12 12 C 1.42899 * 117.00395 * 359.97438 * 11 10 9 13 13 C 1.53001 * 109.47427 * 179.97438 * 12 11 10 14 14 H 1.08998 * 112.84956 * 45.33085 * 13 12 11 15 15 C 1.53782 * 113.61616 * 176.52972 * 13 12 11 16 16 C 1.53780 * 87.08087 * 139.98086 * 15 13 12 17 17 H 1.09006 * 113.61254 * 89.11956 * 16 15 13 18 18 O 1.42896 * 113.61264 * 219.93431 * 16 15 13 19 19 C 1.53779 * 113.61431 * 274.13883 * 13 12 11 20 20 C 1.38161 * 119.97305 * 264.99792 * 3 2 1 21 21 H 1.08999 * 109.47024 * 300.00026 * 1 2 3 22 22 H 1.09005 * 109.46786 * 59.99318 * 1 2 3 23 23 H 1.08995 * 109.47088 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46510 * 240.00679 * 2 1 3 25 25 H 1.08998 * 109.47098 * 120.00441 * 2 1 3 26 26 H 1.09003 * 109.47187 * 315.29680 * 5 4 3 27 27 H 0.96706 * 113.99917 * 179.97438 * 6 5 4 28 28 H 1.48499 * 110.00329 * 178.67917 * 7 5 4 29 29 H 1.48502 * 109.99678 * 300.00325 * 7 5 4 30 30 H 1.08006 * 119.97098 * 179.72383 * 8 4 3 31 31 H 1.07992 * 120.03265 * 180.02562 * 9 8 4 32 32 H 1.08999 * 109.47131 * 299.99853 * 12 11 10 33 33 H 1.09002 * 109.47126 * 60.00144 * 12 11 10 34 34 H 1.09003 * 113.60833 * 254.53213 * 15 13 12 35 35 H 1.09003 * 113.61574 * 25.34510 * 15 13 12 36 36 H 0.96706 * 114.00030 * 180.02562 * 18 16 15 37 37 H 1.09000 * 113.61770 * 334.56138 * 19 13 12 38 38 H 1.09002 * 113.61825 * 105.46876 * 19 13 12 39 39 H 1.08002 * 120.03267 * 0.03200 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1696 2.1048 1.1936 5 6 1.8161 1.4285 2.4930 6 8 2.8432 0.4977 2.8405 7 14 1.6581 2.7092 3.8368 8 6 2.6249 3.4105 1.1965 9 6 2.9496 4.0326 0.0068 10 6 2.8182 3.3464 -1.1920 11 8 3.1375 3.9561 -2.3637 12 6 3.6019 5.3053 -2.2876 13 6 3.9098 5.8190 -3.6955 14 1 3.1300 5.5725 -4.4160 15 6 4.3384 7.2955 -3.7326 16 6 5.3751 6.8864 -4.7921 17 1 4.9968 6.9314 -5.8134 18 8 6.6377 7.5378 -4.6389 19 6 5.3278 5.4743 -4.1806 20 6 2.3608 2.0368 -1.1923 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.8693 0.9000 2.3818 27 1 2.6818 0.0247 3.6684 28 1 1.2785 2.0585 5.1165 29 1 2.9425 3.4368 3.9983 30 1 2.7271 3.9442 2.1299 31 1 3.3055 5.0522 0.0096 32 1 2.8325 5.9293 -1.8330 33 1 4.5067 5.3445 -1.6810 34 1 3.5664 7.9647 -4.1126 35 1 4.7802 7.6455 -2.7996 36 1 7.2939 7.2849 -5.3027 37 1 6.0421 5.3251 -3.3709 38 1 5.3537 4.6754 -4.9218 39 1 2.2573 1.5008 -2.1241 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_11354858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:15:08 Heat of formation + Delta-G solvation = -71.962288 kcal Electronic energy + Delta-G solvation = -19995.643426 eV Core-core repulsion = 16870.837955 eV Total energy + Delta-G solvation = -3124.805471 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.50228 -40.40911 -39.17572 -37.38852 -36.04591 -34.83750 -32.29460 -30.46636 -29.35649 -26.77593 -26.31600 -25.01445 -23.52399 -22.89286 -21.36782 -20.60688 -18.77475 -18.57025 -18.53845 -17.52653 -17.00673 -16.83951 -16.28762 -15.92271 -15.72311 -15.34671 -14.96392 -14.58906 -14.43050 -14.12189 -14.01620 -13.97402 -13.65782 -13.48419 -12.99344 -12.91776 -12.64373 -12.36746 -12.18882 -12.17870 -11.95413 -11.86654 -11.64640 -11.55169 -11.21703 -10.75690 -10.40791 -9.85724 -9.18499 -4.95052 0.26960 0.27866 1.29247 1.56663 1.90995 2.07849 2.56140 3.28565 3.45025 3.45482 3.54852 3.69645 3.75240 3.80165 3.93062 3.95708 4.10476 4.14605 4.21460 4.23291 4.32228 4.38765 4.47067 4.51556 4.60867 4.67183 4.73522 4.75931 4.78252 4.96423 4.97548 5.06880 5.10448 5.11260 5.24644 5.30145 5.36227 5.38865 5.59376 5.73033 6.37537 6.61408 6.85121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.022 4.022 4 C -0.123 4.123 5 C -0.077 4.077 6 O -0.555 6.555 7 Si 0.755 3.245 8 C -0.081 4.081 9 C -0.215 4.215 10 C 0.128 3.872 11 O -0.324 6.324 12 C 0.067 3.933 13 C -0.104 4.104 14 H 0.110 0.890 15 C -0.120 4.120 16 C 0.074 3.926 17 H 0.100 0.900 18 O -0.582 6.582 19 C -0.165 4.165 20 C -0.166 4.166 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.392 0.608 28 H -0.283 1.283 29 H -0.297 1.297 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.395 0.605 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 0.805 -1.000 3.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.023 4.023 4 C -0.123 4.123 5 C -0.186 4.186 6 O -0.364 6.364 7 Si 0.661 3.339 8 C -0.099 4.099 9 C -0.234 4.234 10 C 0.083 3.917 11 O -0.238 6.238 12 C -0.008 4.008 13 C -0.123 4.123 14 H 0.128 0.872 15 C -0.157 4.157 16 C 0.015 3.985 17 H 0.118 0.882 18 O -0.390 6.390 19 C -0.203 4.203 20 C -0.184 4.184 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.243 0.757 28 H -0.210 1.210 29 H -0.225 1.225 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.130 1.504 -0.489 3.507 hybrid contribution 1.062 -1.182 0.067 1.591 sum -2.068 0.322 -0.422 2.135 Atomic orbital electron populations 1.21756 0.93297 1.02664 1.02520 1.20660 0.97204 0.91266 1.03609 1.19727 0.94890 0.96414 0.91221 1.19207 1.04823 0.94384 0.93874 1.24901 0.93340 0.99321 1.01043 1.86575 1.47259 1.56715 1.45894 0.94183 0.83801 0.80724 0.75200 1.21058 0.96144 0.94382 0.98322 1.21353 1.08277 1.02030 0.91720 1.19151 0.94847 0.92606 0.85109 1.86044 1.80000 1.29180 1.28620 1.22969 0.99415 0.79990 0.98405 1.22301 0.97958 0.96291 0.95714 0.87211 1.23065 0.97668 0.95074 0.99892 1.23448 0.84511 0.91506 0.98999 0.88241 1.86478 1.24187 1.69827 1.58519 1.23775 0.96564 0.98417 1.01514 1.20484 1.05669 0.93179 0.99110 0.91770 0.92584 0.91242 0.90775 0.90061 0.88941 0.75735 1.20985 1.22468 0.84434 0.83696 0.90332 0.91703 0.89014 0.89459 0.75505 0.90244 0.90636 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 9.78 71.98 0.70 0.94 16 2 C -0.09 -0.13 5.43 29.85 0.16 0.03 16 3 C -0.02 -0.11 5.13 -19.88 -0.10 -0.21 16 4 C -0.12 -0.55 5.29 -19.85 -0.11 -0.66 16 5 C -0.08 -0.06 1.90 71.23 0.14 0.08 16 6 O -0.55 -1.63 11.91 -148.98 -1.77 -3.40 16 7 Si 0.76 -0.61 30.19 68.60 2.07 1.46 16 8 C -0.08 -0.33 8.65 22.25 0.19 -0.14 16 9 C -0.22 -0.89 9.04 22.37 0.20 -0.69 16 10 C 0.13 0.80 6.69 22.51 0.15 0.95 16 11 O -0.32 -1.82 10.14 -92.33 -0.94 -2.76 16 12 C 0.07 0.03 4.57 71.98 0.33 0.35 16 13 C -0.10 0.14 4.00 -10.27 -0.04 0.10 16 14 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 15 C -0.12 0.22 7.48 31.12 0.23 0.46 16 16 C 0.07 -0.10 5.21 31.18 0.16 0.07 16 17 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 18 O -0.58 -0.91 13.68 -148.98 -2.04 -2.94 16 19 C -0.16 0.07 7.48 31.18 0.23 0.30 16 20 C -0.17 -1.01 9.62 22.37 0.22 -0.79 16 21 H 0.06 -0.18 6.70 -2.39 -0.02 -0.20 16 22 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 23 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 24 H 0.07 0.07 8.05 -2.38 -0.02 0.05 16 25 H 0.08 0.18 6.43 -2.39 -0.02 0.17 16 26 H 0.09 -0.28 5.91 -2.39 -0.01 -0.29 16 27 H 0.39 -2.02 8.74 -74.05 -0.65 -2.67 16 28 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 29 H -0.30 -1.78 6.74 99.48 0.67 -1.11 16 30 H 0.14 0.19 4.89 -2.91 -0.01 0.18 16 31 H 0.15 0.01 6.30 -2.91 -0.02 -0.01 16 32 H 0.08 -0.17 7.66 -2.39 -0.02 -0.19 16 33 H 0.06 0.02 7.39 -2.39 -0.02 0.00 16 34 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.09 -0.04 8.10 -2.39 -0.02 -0.06 16 36 H 0.39 -2.50 9.12 -74.05 -0.68 -3.18 16 37 H 0.08 0.15 7.92 -2.39 -0.02 0.13 16 38 H 0.07 -0.07 8.14 -2.39 -0.02 -0.08 16 39 H 0.13 0.59 8.06 -2.91 -0.02 0.56 16 Total: 0.00 -14.58 314.15 -0.46 -15.05 By element: Atomic # 1 Polarization: -7.94 SS G_CDS: -0.26 Total: -8.20 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 2.47 Total: 0.79 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -4.75 Total: -9.10 kcal Atomic # 14 Polarization: -0.61 SS G_CDS: 2.07 Total: 1.46 kcal Total: -14.58 -0.46 -15.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_11354858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.916 kcal (2) G-P(sol) polarization free energy of solvation -14.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds