Wall clock time and date at job start Mon Mar 8 2021 13:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47242 * 2 1 4 4 C 1.38124 * 119.97178 * 265.00536 * 3 2 1 5 5 C 1.38757 * 119.93971 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.05005 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99507 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.46854 * 75.00277 * 7 6 5 9 9 Si 1.63101 * 113.99905 * 179.97438 * 8 7 6 10 10 C 1.86306 * 109.46968 * 299.99867 * 9 8 7 11 11 C 1.86297 * 109.47197 * 59.99753 * 9 8 7 12 12 C 1.86302 * 109.47016 * 179.97438 * 9 8 7 13 13 C 1.53000 * 109.46869 * 60.00213 * 12 9 8 14 14 C 1.52998 * 109.46788 * 179.97438 * 12 9 8 15 15 C 1.52998 * 109.46886 * 299.99828 * 12 9 8 16 16 C 1.38706 * 119.89140 * 0.26952 * 5 4 3 17 17 C 1.38172 * 119.94392 * 359.50028 * 16 5 4 18 18 C 1.38244 * 120.05145 * 0.48003 * 17 16 5 19 19 C 1.50707 * 119.94223 * 179.74834 * 18 17 16 20 20 O 1.42900 * 109.46927 * 105.01881 * 19 18 17 21 21 Si 1.86297 * 109.46884 * 345.02270 * 19 18 17 22 22 H 1.48501 * 109.47230 * 60.00222 * 21 19 18 23 23 H 1.48504 * 109.47173 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47332 * 299.99935 * 21 19 18 25 25 H 1.09005 * 109.46983 * 299.99886 * 1 2 3 26 26 H 1.08997 * 109.47304 * 59.99845 * 1 2 3 27 27 H 1.09000 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47062 * 240.00617 * 2 1 3 29 29 H 1.08997 * 109.47304 * 120.00155 * 2 1 3 30 30 H 1.07994 * 120.02896 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47490 * 315.00136 * 7 6 5 32 32 H 1.09001 * 109.47232 * 194.99490 * 7 6 5 33 33 H 1.08998 * 109.46973 * 59.99630 * 10 9 8 34 34 H 1.09001 * 109.46903 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46903 * 299.99734 * 10 9 8 36 36 H 1.09005 * 109.47355 * 60.00017 * 11 9 8 37 37 H 1.08997 * 109.47216 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.47207 * 300.00013 * 11 9 8 39 39 H 1.08997 * 109.47412 * 59.99882 * 13 12 9 40 40 H 1.08999 * 109.46454 * 180.02562 * 13 12 9 41 41 H 1.09006 * 109.47253 * 299.99285 * 13 12 9 42 42 H 1.08997 * 109.47329 * 60.00309 * 14 12 9 43 43 H 1.08999 * 109.46825 * 180.02562 * 14 12 9 44 44 H 1.08997 * 109.47384 * 300.00052 * 14 12 9 45 45 H 1.08997 * 109.47329 * 60.00388 * 15 12 9 46 46 H 1.09009 * 109.46785 * 180.02562 * 15 12 9 47 47 H 1.08997 * 109.47366 * 299.99774 * 15 12 9 48 48 H 1.07998 * 120.02945 * 179.72491 * 16 5 4 49 49 H 1.08000 * 119.97355 * 180.22839 * 17 16 5 50 50 H 1.08996 * 109.46890 * 225.02389 * 19 18 17 51 51 H 0.96694 * 114.00553 * 300.00059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0367 -1.1920 5 6 2.8225 3.3451 -1.1913 6 8 3.1456 3.9534 -2.3628 7 6 3.6140 5.3013 -2.2862 8 8 4.9579 5.3117 -1.8006 9 14 5.6046 6.8034 -1.6701 10 6 5.6183 7.6228 -3.3432 11 6 4.5852 7.8210 -0.4886 12 6 7.3487 6.6702 -1.0288 13 6 8.1862 5.8343 -1.9988 14 6 7.9555 8.0694 -0.9070 15 6 7.3368 5.9975 0.3453 16 6 2.9588 4.0294 0.0075 17 6 2.6246 3.4105 1.1968 18 6 2.1641 2.1070 1.1934 19 6 1.8057 1.4324 2.4925 20 8 0.3838 1.3613 2.6158 21 14 2.5041 2.4126 3.9145 22 1 1.9364 3.7846 3.8961 23 1 2.1505 1.7482 5.1947 24 1 3.9817 2.4865 3.7863 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2577 1.5003 -2.1237 31 1 2.9778 5.8690 -1.6072 32 1 3.5824 5.7538 -3.2774 33 1 4.5977 7.7007 -3.7180 34 1 6.0509 8.6195 -3.2561 35 1 6.2148 7.0274 -4.0345 36 1 4.5771 7.3416 0.4903 37 1 5.0171 8.8180 -0.4017 38 1 3.5646 7.8989 -0.8634 39 1 8.1946 6.3136 -2.9777 40 1 9.2065 5.7560 -1.6233 41 1 7.7541 4.8374 -2.0859 42 1 7.3589 8.6653 -0.2163 43 1 8.9760 7.9914 -0.5323 44 1 7.9639 8.5483 -1.8861 45 1 6.9047 5.0006 0.2581 46 1 8.3573 5.9200 0.7207 47 1 6.7402 6.5930 1.0362 48 1 3.3224 5.0463 0.0111 49 1 2.7270 3.9441 2.1302 50 1 2.2224 0.4253 2.5060 51 1 -0.0550 2.2230 2.6112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_14468166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:31:25 Heat of formation + Delta-G solvation = -156.854362 kcal Electronic energy + Delta-G solvation = -27170.701309 eV Core-core repulsion = 23579.158822 eV Total energy + Delta-G solvation = -3591.542487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44177 -39.72532 -37.52073 -36.93424 -36.73190 -34.72523 -31.95213 -30.38515 -29.63307 -29.22704 -27.95711 -27.49300 -27.41651 -25.90514 -24.69830 -23.00562 -21.50021 -20.52204 -18.97412 -18.52126 -18.39891 -17.51570 -16.84507 -16.35352 -16.09508 -15.96289 -15.66549 -15.22959 -14.99230 -14.89462 -14.84821 -14.60909 -14.43512 -14.36732 -14.13189 -13.82942 -13.75576 -13.64644 -13.57066 -13.40083 -13.31824 -13.02943 -13.01682 -12.65886 -12.49135 -12.39931 -12.17735 -12.16265 -12.05412 -11.91411 -11.87248 -11.69053 -11.64100 -11.54489 -11.27518 -10.58035 -10.27177 -10.19757 -9.73646 -9.12596 0.37660 0.38980 1.16530 1.18512 1.41827 1.54007 1.54676 1.85908 1.93185 2.06673 2.43394 2.73021 3.50790 3.61865 3.73222 3.81113 3.94479 3.96098 4.03057 4.03737 4.20039 4.29955 4.37453 4.46148 4.49936 4.52877 4.56507 4.58468 4.59159 4.60723 4.71842 4.72643 4.77963 4.88745 4.92167 4.96593 5.02678 5.03104 5.04245 5.14698 5.16443 5.21946 5.25147 5.31596 5.34420 5.38900 5.40571 5.41776 5.47601 5.62485 5.70289 5.80767 6.37674 6.57820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.014 4.014 4 C -0.148 4.148 5 C 0.140 3.860 6 O -0.298 6.298 7 C 0.249 3.751 8 O -0.645 6.645 9 Si 1.291 2.709 10 C -0.513 4.513 11 C -0.515 4.515 12 C -0.372 4.372 13 C -0.135 4.135 14 C -0.137 4.137 15 C -0.135 4.135 16 C -0.196 4.196 17 C -0.087 4.087 18 C -0.156 4.156 19 C -0.072 4.072 20 O -0.534 6.534 21 Si 0.944 3.056 22 H -0.253 1.253 23 H -0.254 1.254 24 H -0.250 1.250 25 H 0.083 0.917 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.133 0.867 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.117 0.883 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 2.564 -0.107 2.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.122 4.122 3 C -0.014 4.014 4 C -0.167 4.167 5 C 0.096 3.904 6 O -0.212 6.212 7 C 0.136 3.864 8 O -0.605 6.605 9 Si 1.423 2.577 10 C -0.615 4.615 11 C -0.617 4.617 12 C -0.416 4.416 13 C -0.192 4.192 14 C -0.194 4.194 15 C -0.192 4.192 16 C -0.215 4.215 17 C -0.105 4.105 18 C -0.156 4.156 19 C -0.183 4.183 20 O -0.339 6.339 21 Si 0.767 3.233 22 H -0.178 1.178 23 H -0.178 1.178 24 H -0.173 1.173 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.148 0.852 49 H 0.142 0.858 50 H 0.134 0.866 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.127 2.041 0.450 2.094 hybrid contribution 0.073 1.184 -0.387 1.248 sum 0.200 3.226 0.063 3.232 Atomic orbital electron populations 1.21909 0.93845 1.02065 1.03343 1.20572 0.97115 0.91637 1.02841 1.19531 0.94677 0.96060 0.91139 1.20361 1.04877 0.92578 0.98855 1.18965 0.94300 0.92427 0.84749 1.86261 1.77413 1.28883 1.28631 1.23407 0.80774 0.82445 0.99786 1.85331 1.31130 1.60188 1.83837 0.76590 0.64444 0.51310 0.65347 1.27032 1.04580 1.09186 1.20689 1.27070 1.10146 1.11470 1.13015 1.25743 1.16695 0.98201 1.00936 1.21520 0.99854 0.99643 0.98195 1.21561 1.01298 0.94898 1.01674 1.21524 1.02153 1.00437 0.95119 1.21139 1.07136 1.01237 0.91956 1.20874 0.97524 0.94234 0.97850 1.19991 1.05151 0.94811 0.95669 1.24838 0.86184 1.06937 1.00333 1.86500 1.17134 1.34322 1.95925 0.85789 0.80674 0.78919 0.77914 1.17755 1.17788 1.17296 0.89837 0.93231 0.92701 0.91225 0.90485 0.84933 0.91961 0.87354 0.91387 0.90339 0.90525 0.90688 0.90173 0.91385 0.92627 0.92659 0.92104 0.92488 0.92352 0.92447 0.92123 0.92631 0.92712 0.85213 0.85833 0.86573 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.07 9.85 37.15 0.37 0.29 16 2 C -0.08 -0.04 5.55 -27.88 -0.15 -0.19 16 3 C -0.01 -0.02 5.13 -104.64 -0.54 -0.56 16 4 C -0.15 -0.32 9.62 -39.43 -0.38 -0.70 16 5 C 0.14 0.35 6.63 -39.22 -0.26 0.09 16 6 O -0.30 -0.70 10.40 -43.24 -0.45 -1.15 16 7 C 0.25 -0.11 5.42 101.05 0.55 0.44 16 8 O -0.64 -0.16 8.02 -59.04 -0.47 -0.63 16 9 Si 1.29 -2.32 8.45 -169.99 -1.44 -3.75 16 10 C -0.51 0.87 8.50 101.05 0.86 1.73 16 11 C -0.52 1.00 8.50 101.05 0.86 1.86 16 12 C -0.37 0.27 0.53 -90.62 -0.05 0.22 16 13 C -0.13 0.01 7.85 37.16 0.29 0.30 16 14 C -0.14 0.16 7.85 37.16 0.29 0.45 16 15 C -0.14 0.02 7.85 37.16 0.29 0.31 16 16 C -0.20 -0.31 8.78 -39.43 -0.35 -0.65 16 17 C -0.09 -0.09 8.65 -39.60 -0.34 -0.43 16 18 C -0.16 -0.16 5.26 -104.60 -0.55 -0.71 16 19 C -0.07 0.02 2.08 36.01 0.07 0.10 16 20 O -0.53 0.17 10.17 -35.23 -0.36 -0.19 16 21 Si 0.94 -0.25 25.49 -169.99 -4.33 -4.58 16 22 H -0.25 0.10 6.73 56.52 0.38 0.48 16 23 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 24 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 25 H 0.08 0.08 5.32 -51.93 -0.28 -0.20 16 26 H 0.05 0.04 8.14 -51.93 -0.42 -0.39 16 27 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 -0.01 8.05 -51.93 -0.42 -0.42 16 29 H 0.08 0.00 6.43 -51.93 -0.33 -0.34 16 30 H 0.13 0.17 8.06 -52.49 -0.42 -0.25 16 31 H 0.06 -0.15 5.79 -51.93 -0.30 -0.45 16 32 H 0.11 -0.32 7.21 -51.93 -0.37 -0.69 16 33 H 0.07 -0.16 7.48 -51.93 -0.39 -0.55 16 34 H 0.08 -0.15 7.79 -51.93 -0.40 -0.56 16 35 H 0.08 -0.09 7.79 -51.93 -0.40 -0.50 16 36 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 37 H 0.08 -0.17 7.79 -51.93 -0.40 -0.58 16 38 H 0.07 -0.17 7.48 -51.93 -0.39 -0.56 16 39 H 0.05 -0.04 7.80 -51.93 -0.40 -0.45 16 40 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 42 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 43 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 44 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 45 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 46 H 0.05 0.01 8.14 -51.92 -0.42 -0.41 16 47 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 48 H 0.13 0.00 5.85 -52.49 -0.31 -0.31 16 49 H 0.12 -0.05 4.88 -52.49 -0.26 -0.31 16 50 H 0.12 -0.10 6.53 -51.93 -0.34 -0.44 16 51 H 0.37 -1.18 8.70 45.56 0.40 -0.78 16 LS Contribution 392.26 15.07 5.91 5.91 Total: 0.00 -4.68 392.26 -8.58 -13.26 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -8.40 Total: -11.43 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 0.96 Total: 2.56 kcal Atomic # 8 Polarization: -0.69 SS G_CDS: -1.28 Total: -1.97 kcal Atomic # 14 Polarization: -2.56 SS G_CDS: -5.77 Total: -8.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -4.68 -8.58 -13.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_14468166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.593 kcal (2) G-P(sol) polarization free energy of solvation -4.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds