Wall clock time and date at job start Mon Mar 8 2021 13:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47242 * 2 1 4 4 C 1.38124 * 119.97178 * 265.00536 * 3 2 1 5 5 C 1.38757 * 119.93971 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.05005 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99507 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.46854 * 75.00277 * 7 6 5 9 9 Si 1.63101 * 113.99905 * 179.97438 * 8 7 6 10 10 C 1.86306 * 109.46968 * 299.99867 * 9 8 7 11 11 C 1.86297 * 109.47197 * 59.99753 * 9 8 7 12 12 C 1.86302 * 109.47016 * 179.97438 * 9 8 7 13 13 C 1.53000 * 109.46869 * 60.00213 * 12 9 8 14 14 C 1.52998 * 109.46788 * 179.97438 * 12 9 8 15 15 C 1.52998 * 109.46886 * 299.99828 * 12 9 8 16 16 C 1.38706 * 119.89140 * 0.26952 * 5 4 3 17 17 C 1.38172 * 119.94392 * 359.50028 * 16 5 4 18 18 C 1.38244 * 120.05145 * 0.48003 * 17 16 5 19 19 C 1.50707 * 119.94223 * 179.74834 * 18 17 16 20 20 O 1.42900 * 109.46927 * 105.01881 * 19 18 17 21 21 Si 1.86297 * 109.46884 * 345.02270 * 19 18 17 22 22 H 1.48501 * 109.47230 * 60.00222 * 21 19 18 23 23 H 1.48504 * 109.47173 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47332 * 299.99935 * 21 19 18 25 25 H 1.09005 * 109.46983 * 299.99886 * 1 2 3 26 26 H 1.08997 * 109.47304 * 59.99845 * 1 2 3 27 27 H 1.09000 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47062 * 240.00617 * 2 1 3 29 29 H 1.08997 * 109.47304 * 120.00155 * 2 1 3 30 30 H 1.07994 * 120.02896 * 359.97438 * 4 3 2 31 31 H 1.09000 * 109.47490 * 315.00136 * 7 6 5 32 32 H 1.09001 * 109.47232 * 194.99490 * 7 6 5 33 33 H 1.08998 * 109.46973 * 59.99630 * 10 9 8 34 34 H 1.09001 * 109.46903 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46903 * 299.99734 * 10 9 8 36 36 H 1.09005 * 109.47355 * 60.00017 * 11 9 8 37 37 H 1.08997 * 109.47216 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.47207 * 300.00013 * 11 9 8 39 39 H 1.08997 * 109.47412 * 59.99882 * 13 12 9 40 40 H 1.08999 * 109.46454 * 180.02562 * 13 12 9 41 41 H 1.09006 * 109.47253 * 299.99285 * 13 12 9 42 42 H 1.08997 * 109.47329 * 60.00309 * 14 12 9 43 43 H 1.08999 * 109.46825 * 180.02562 * 14 12 9 44 44 H 1.08997 * 109.47384 * 300.00052 * 14 12 9 45 45 H 1.08997 * 109.47329 * 60.00388 * 15 12 9 46 46 H 1.09009 * 109.46785 * 180.02562 * 15 12 9 47 47 H 1.08997 * 109.47366 * 299.99774 * 15 12 9 48 48 H 1.07998 * 120.02945 * 179.72491 * 16 5 4 49 49 H 1.08000 * 119.97355 * 180.22839 * 17 16 5 50 50 H 1.08996 * 109.46890 * 225.02389 * 19 18 17 51 51 H 0.96694 * 114.00553 * 300.00059 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3606 2.0367 -1.1920 5 6 2.8225 3.3451 -1.1913 6 8 3.1456 3.9534 -2.3628 7 6 3.6140 5.3013 -2.2862 8 8 4.9579 5.3117 -1.8006 9 14 5.6046 6.8034 -1.6701 10 6 5.6183 7.6228 -3.3432 11 6 4.5852 7.8210 -0.4886 12 6 7.3487 6.6702 -1.0288 13 6 8.1862 5.8343 -1.9988 14 6 7.9555 8.0694 -0.9070 15 6 7.3368 5.9975 0.3453 16 6 2.9588 4.0294 0.0075 17 6 2.6246 3.4105 1.1968 18 6 2.1641 2.1070 1.1934 19 6 1.8057 1.4324 2.4925 20 8 0.3838 1.3613 2.6158 21 14 2.5041 2.4126 3.9145 22 1 1.9364 3.7846 3.8961 23 1 2.1505 1.7482 5.1947 24 1 3.9817 2.4865 3.7863 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.2577 1.5003 -2.1237 31 1 2.9778 5.8690 -1.6072 32 1 3.5824 5.7538 -3.2774 33 1 4.5977 7.7007 -3.7180 34 1 6.0509 8.6195 -3.2561 35 1 6.2148 7.0274 -4.0345 36 1 4.5771 7.3416 0.4903 37 1 5.0171 8.8180 -0.4017 38 1 3.5646 7.8989 -0.8634 39 1 8.1946 6.3136 -2.9777 40 1 9.2065 5.7560 -1.6233 41 1 7.7541 4.8374 -2.0859 42 1 7.3589 8.6653 -0.2163 43 1 8.9760 7.9914 -0.5323 44 1 7.9639 8.5483 -1.8861 45 1 6.9047 5.0006 0.2581 46 1 8.3573 5.9200 0.7207 47 1 6.7402 6.5930 1.0362 48 1 3.3224 5.0463 0.0111 49 1 2.7270 3.9441 2.1302 50 1 2.2224 0.4253 2.5060 51 1 -0.0550 2.2230 2.6112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_14468166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:31:24 Heat of formation + Delta-G solvation = -147.159309 kcal Electronic energy + Delta-G solvation = -27170.280900 eV Core-core repulsion = 23579.158822 eV Total energy + Delta-G solvation = -3591.122078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.187 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48003 -39.73048 -37.47998 -36.87613 -36.71152 -34.76669 -31.99569 -30.42841 -29.47375 -29.10969 -27.86970 -27.42697 -27.37881 -25.89366 -24.73334 -23.05513 -21.52701 -20.46684 -19.00199 -18.50342 -18.33537 -17.51708 -16.85411 -16.32579 -16.06641 -15.94551 -15.65142 -15.23196 -14.96003 -14.86478 -14.81571 -14.60925 -14.46808 -14.36271 -14.05262 -13.77470 -13.74939 -13.53135 -13.41145 -13.33739 -13.21905 -12.99972 -12.94783 -12.67638 -12.44797 -12.40597 -12.18946 -12.16695 -11.97309 -11.93755 -11.81258 -11.63818 -11.60019 -11.52800 -11.27546 -10.43619 -10.24866 -10.11421 -9.81654 -9.19748 0.30637 0.30827 1.20680 1.31490 1.43068 1.54447 1.66655 1.92524 2.03919 2.15594 2.50303 2.65939 3.57525 3.70465 3.76120 3.82691 3.93943 4.06720 4.08561 4.10230 4.17153 4.26421 4.42192 4.43348 4.56226 4.57931 4.68600 4.70551 4.71163 4.74871 4.75192 4.78545 4.80141 4.86988 4.96620 5.00035 5.05751 5.06154 5.06436 5.12257 5.18261 5.22479 5.29007 5.32252 5.34427 5.37004 5.42954 5.56711 5.57870 5.61423 5.65614 5.76281 6.33088 6.76372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.020 4.020 4 C -0.163 4.163 5 C 0.126 3.874 6 O -0.315 6.315 7 C 0.234 3.766 8 O -0.663 6.663 9 Si 1.318 2.682 10 C -0.519 4.519 11 C -0.519 4.519 12 C -0.382 4.382 13 C -0.138 4.138 14 C -0.141 4.141 15 C -0.137 4.137 16 C -0.203 4.203 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.068 4.068 20 O -0.542 6.542 21 Si 0.972 3.028 22 H -0.247 1.247 23 H -0.273 1.273 24 H -0.264 1.264 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.143 0.857 49 H 0.137 0.863 50 H 0.121 0.879 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 3.476 0.031 3.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.021 4.021 4 C -0.182 4.182 5 C 0.081 3.919 6 O -0.230 6.230 7 C 0.122 3.878 8 O -0.623 6.623 9 Si 1.449 2.551 10 C -0.621 4.621 11 C -0.621 4.621 12 C -0.424 4.424 13 C -0.195 4.195 14 C -0.198 4.198 15 C -0.195 4.195 16 C -0.221 4.221 17 C -0.111 4.111 18 C -0.159 4.159 19 C -0.179 4.179 20 O -0.349 6.349 21 Si 0.798 3.202 22 H -0.171 1.171 23 H -0.199 1.199 24 H -0.189 1.189 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.161 0.839 49 H 0.155 0.845 50 H 0.139 0.861 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.487 2.962 0.583 3.058 hybrid contribution 0.295 0.898 -0.430 1.039 sum -0.192 3.860 0.152 3.868 Atomic orbital electron populations 1.21875 0.93839 1.02162 1.02973 1.20592 0.97062 0.91213 1.03246 1.19682 0.94686 0.96535 0.91164 1.20522 1.05477 0.92927 0.99263 1.19151 0.94708 0.92749 0.85252 1.86234 1.77668 1.30271 1.28823 1.23850 0.80733 0.81574 1.01652 1.85322 1.31581 1.61293 1.84143 0.76116 0.63079 0.50707 0.65174 1.27076 1.05151 1.09342 1.20516 1.27074 1.10672 1.11603 1.12774 1.25925 1.17945 0.98200 1.00358 1.21545 0.99582 0.99451 0.98899 1.21602 1.00974 0.94783 1.02406 1.21546 1.01804 1.00232 0.95878 1.21339 1.07057 1.01919 0.91809 1.21092 0.97279 0.94410 0.98306 1.20163 1.04815 0.94908 0.96014 1.24834 0.86343 1.07160 0.99587 1.86473 1.17029 1.35555 1.95823 0.85386 0.79398 0.78841 0.76618 1.17080 1.19850 1.18890 0.90114 0.93654 0.92348 0.90921 0.89979 0.84882 0.90093 0.85179 0.90447 0.89883 0.91119 0.90821 0.89672 0.90462 0.91893 0.93341 0.93061 0.91496 0.93189 0.91630 0.93063 0.93363 0.91724 0.83942 0.84515 0.86123 0.76467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.17 9.85 71.98 0.71 0.54 16 2 C -0.08 -0.09 5.55 29.85 0.17 0.07 16 3 C -0.02 -0.07 5.13 -19.88 -0.10 -0.17 16 4 C -0.16 -0.87 9.62 22.37 0.22 -0.65 16 5 C 0.13 0.72 6.63 22.51 0.15 0.87 16 6 O -0.32 -1.65 10.40 -69.68 -0.72 -2.37 16 7 C 0.23 -0.29 5.42 113.37 0.61 0.32 16 8 O -0.66 -0.33 8.02 -126.21 -1.01 -1.34 16 9 Si 1.32 -5.36 8.45 68.60 0.58 -4.78 16 10 C -0.52 2.20 8.50 113.37 0.96 3.17 16 11 C -0.52 2.67 8.50 113.37 0.96 3.63 16 12 C -0.38 0.43 0.53 -10.79 -0.01 0.43 16 13 C -0.14 -0.11 7.85 71.98 0.56 0.45 16 14 C -0.14 0.35 7.85 71.98 0.56 0.92 16 15 C -0.14 -0.05 7.85 71.98 0.56 0.51 16 16 C -0.20 -0.64 8.78 22.37 0.20 -0.45 16 17 C -0.09 -0.18 8.65 22.26 0.19 0.01 16 18 C -0.16 -0.32 5.26 -19.85 -0.10 -0.43 16 19 C -0.07 0.05 2.08 71.24 0.15 0.20 16 20 O -0.54 0.57 10.17 -148.98 -1.52 -0.95 16 21 Si 0.97 -0.69 25.49 68.60 1.75 1.06 16 22 H -0.25 0.46 6.73 99.48 0.67 1.13 16 23 H -0.27 -0.68 7.11 99.48 0.71 0.02 16 24 H -0.26 -0.45 7.11 99.48 0.71 0.26 16 25 H 0.08 0.14 5.32 -2.38 -0.01 0.13 16 26 H 0.04 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.07 0.02 8.05 -2.39 -0.02 0.00 16 29 H 0.08 0.00 6.43 -2.39 -0.02 -0.02 16 30 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 31 H 0.08 -0.46 5.79 -2.39 -0.01 -0.47 16 32 H 0.13 -0.86 7.21 -2.39 -0.02 -0.88 16 33 H 0.08 -0.47 7.48 -2.39 -0.02 -0.49 16 34 H 0.08 -0.42 7.79 -2.39 -0.02 -0.44 16 35 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 36 H 0.07 -0.33 7.79 -2.38 -0.02 -0.35 16 37 H 0.08 -0.50 7.79 -2.39 -0.02 -0.52 16 38 H 0.08 -0.52 7.48 -2.39 -0.02 -0.54 16 39 H 0.06 -0.06 7.80 -2.39 -0.02 -0.08 16 40 H 0.05 0.08 8.14 -2.39 -0.02 0.07 16 41 H 0.05 0.13 7.97 -2.38 -0.02 0.11 16 42 H 0.07 -0.30 7.79 -2.39 -0.02 -0.32 16 43 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.06 -0.27 7.79 -2.39 -0.02 -0.29 16 45 H 0.05 0.11 7.96 -2.39 -0.02 0.09 16 46 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 48 H 0.14 -0.06 5.85 -2.91 -0.02 -0.08 16 49 H 0.14 -0.20 4.88 -2.91 -0.01 -0.21 16 50 H 0.12 -0.23 6.53 -2.39 -0.02 -0.25 16 51 H 0.39 -2.65 8.70 -74.06 -0.64 -3.30 16 Total: 0.00 -11.03 392.26 5.85 -5.18 By element: Atomic # 1 Polarization: -7.20 SS G_CDS: 0.97 Total: -6.22 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.80 Total: 9.43 kcal Atomic # 8 Polarization: -1.41 SS G_CDS: -3.25 Total: -4.66 kcal Atomic # 14 Polarization: -6.05 SS G_CDS: 2.33 Total: -3.72 kcal Total: -11.03 5.85 -5.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_14468166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.977 kcal (2) G-P(sol) polarization free energy of solvation -11.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds