Wall clock time and date at job start Mon Mar 8 2021 14:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47283 * 2 1 4 4 C 1.38240 * 119.97662 * 84.99790 * 3 2 1 5 5 C 1.50704 * 119.94066 * 0.02562 * 4 3 2 6 6 O 1.42903 * 109.47082 * 75.01901 * 5 4 3 7 7 Si 1.86298 * 109.47026 * 195.02080 * 5 4 3 8 8 C 1.38288 * 120.11591 * 180.02562 * 4 3 2 9 9 C 1.38119 * 120.05366 * 0.24016 * 8 4 3 10 10 C 1.38758 * 119.94423 * 359.46692 * 9 8 4 11 11 O 1.35898 * 120.05486 * 180.30356 * 10 9 8 12 12 C 1.42901 * 117.00080 * 0.24640 * 11 10 9 13 13 C 1.53002 * 109.47059 * 180.02562 * 12 11 10 14 14 H 1.09004 * 112.84889 * 314.67114 * 13 12 11 15 15 C 1.53775 * 113.61439 * 85.86412 * 13 12 11 16 16 C 1.53956 * 87.02166 * 139.95049 * 15 13 12 17 17 H 1.09000 * 113.74801 * 220.05725 * 16 15 13 18 18 N 1.46502 * 113.53600 * 89.19031 * 16 15 13 19 19 C 1.34772 * 120.00013 * 107.50641 * 18 16 15 20 20 O 1.21504 * 120.00348 * 0.02562 * 19 18 16 21 21 O 1.34639 * 119.99681 * 180.02562 * 19 18 16 22 22 C 1.45205 * 116.99769 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47229 * 59.99922 * 22 21 19 24 24 C 1.53001 * 109.46820 * 179.97438 * 22 21 19 25 25 C 1.53003 * 109.47047 * 299.99627 * 22 21 19 26 26 C 1.53781 * 113.61309 * 183.47265 * 13 12 11 27 27 C 1.38172 * 119.97137 * 264.98161 * 3 2 1 28 28 H 1.09005 * 109.46937 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47231 * 300.00066 * 1 2 3 30 30 H 1.08996 * 109.47359 * 59.99936 * 1 2 3 31 31 H 1.09007 * 109.47005 * 239.99930 * 2 1 3 32 32 H 1.08996 * 109.47359 * 120.00064 * 2 1 3 33 33 H 1.08999 * 109.47149 * 315.01995 * 5 4 3 34 34 H 0.96695 * 114.00214 * 59.99904 * 6 5 4 35 35 H 1.48498 * 109.99895 * 180.02562 * 7 5 4 36 36 H 1.48504 * 109.99985 * 301.31691 * 7 5 4 37 37 H 1.08002 * 119.96980 * 179.97438 * 8 4 3 38 38 H 1.07998 * 120.02956 * 179.72220 * 9 8 4 39 39 H 1.08998 * 109.47429 * 300.00517 * 12 11 10 40 40 H 1.09004 * 109.46686 * 60.00811 * 12 11 10 41 41 H 1.08998 * 113.61803 * 254.52697 * 15 13 12 42 42 H 1.09007 * 113.61497 * 25.43652 * 15 13 12 43 43 H 0.97005 * 119.99854 * 287.50864 * 18 16 15 44 44 H 1.09002 * 109.47233 * 60.00152 * 23 22 21 45 45 H 1.09001 * 109.47441 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.47154 * 300.00436 * 23 22 21 47 47 H 1.08996 * 109.47095 * 60.00341 * 24 22 21 48 48 H 1.09006 * 109.47084 * 179.97438 * 24 22 21 49 49 H 1.09002 * 109.47365 * 299.99678 * 24 22 21 50 50 H 1.09002 * 109.46547 * 60.00048 * 25 22 21 51 51 H 1.09001 * 109.46919 * 179.97438 * 25 22 21 52 52 H 1.08998 * 109.47153 * 300.00146 * 25 22 21 53 53 H 1.08992 * 113.61907 * 334.56974 * 26 13 12 54 54 H 1.09004 * 113.61187 * 105.47006 * 26 13 12 55 55 H 1.07997 * 120.02796 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.1642 2.1068 1.1929 5 6 1.8057 1.4323 2.4920 6 8 2.8289 0.4981 2.8420 7 14 1.6495 2.7142 3.8348 8 6 2.6244 3.4108 1.1962 9 6 2.9489 4.0328 0.0065 10 6 2.8233 3.3445 -1.1917 11 8 3.1478 3.9523 -2.3631 12 6 3.6169 5.2999 -2.2866 13 6 3.9290 5.8120 -3.6941 14 1 4.4913 5.0937 -4.2909 15 6 2.7067 6.3950 -4.4226 16 6 3.6467 7.4934 -4.9519 17 1 3.1977 8.4865 -4.9653 18 7 4.2976 7.1464 -6.2177 19 6 3.9156 7.7512 -7.3599 20 8 3.0317 8.5847 -7.3399 21 8 4.5135 7.4319 -8.5232 22 6 4.0516 8.1235 -9.7134 23 6 4.2625 9.6292 -9.5425 24 6 4.8425 7.6328 -10.9277 25 6 2.5633 7.8376 -9.9241 26 6 4.5231 7.2302 -3.7160 27 6 2.3612 2.0366 -1.1924 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.8573 0.9070 2.3791 34 1 3.7021 0.8967 2.9588 35 1 1.2968 2.0617 5.1213 36 1 2.9263 3.4591 3.9770 37 1 2.7261 3.9447 2.1295 38 1 3.3040 5.0528 0.0091 39 1 2.8487 5.9270 -1.8342 40 1 4.5204 5.3360 -1.6778 41 1 2.3116 5.7441 -5.2025 42 1 1.9344 6.7683 -3.7499 43 1 5.0035 6.4812 -6.2337 44 1 5.3228 9.8328 -9.3925 45 1 3.9161 10.1484 -10.4362 46 1 3.6994 9.9791 -8.6773 47 1 4.6926 6.5601 -11.0496 48 1 4.4955 8.1517 -11.8213 49 1 5.9027 7.8368 -10.7774 50 1 2.0002 8.1875 -9.0589 51 1 2.2164 8.3572 -10.8173 52 1 2.4131 6.7650 -10.0458 53 1 4.2485 7.8321 -2.8498 54 1 5.5925 7.2524 -3.9263 55 1 2.2579 1.5004 -2.1241 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14047408_15734082.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:30:17 Heat of formation + Delta-G solvation = -103.124495 kcal Electronic energy + Delta-G solvation = -32700.840993 eV Core-core repulsion = 28284.661888 eV Total energy + Delta-G solvation = -4416.179104 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.213 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.99025 -41.44986 -40.47684 -39.26826 -37.90343 -37.25750 -35.39204 -34.84846 -34.11896 -32.13934 -30.40250 -29.38773 -28.39081 -28.32423 -26.76272 -26.38609 -25.16597 -24.39056 -23.21851 -22.88031 -21.53872 -21.14772 -20.31091 -19.34803 -18.73890 -18.39424 -17.64965 -17.37472 -17.21563 -16.98484 -16.57756 -16.51382 -16.14026 -15.81977 -15.72705 -15.45308 -15.27599 -15.00876 -14.80559 -14.52672 -14.50291 -14.40201 -14.15759 -13.83689 -13.61821 -13.54065 -13.37419 -13.31315 -13.15385 -12.94748 -12.89354 -12.85910 -12.68263 -12.50948 -12.35399 -12.18462 -12.12083 -11.94956 -11.86909 -11.78864 -11.66284 -11.42290 -11.36384 -11.19544 -11.14325 -10.51744 -10.20988 -9.82589 -9.14810 -4.92314 0.30692 0.32035 1.10776 1.32552 1.57167 1.69414 1.94715 2.15931 2.63139 3.08578 3.39829 3.46913 3.51160 3.69883 3.71731 3.72441 3.75492 3.79467 3.85669 3.91832 3.92097 4.12530 4.21078 4.27925 4.31972 4.43348 4.44580 4.46224 4.52525 4.53934 4.59119 4.59979 4.65764 4.72855 4.74130 4.74212 4.76580 4.81030 4.85364 4.87625 4.97742 5.00181 5.03135 5.06085 5.08324 5.12250 5.15330 5.24852 5.26946 5.29842 5.33103 5.37975 5.46026 5.59082 5.62388 5.77176 6.34525 6.44400 6.51590 7.29918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.021 4.021 4 C -0.159 4.159 5 C -0.077 4.077 6 O -0.546 6.546 7 Si 0.761 3.239 8 C -0.080 4.080 9 C -0.211 4.211 10 C 0.131 3.869 11 O -0.328 6.328 12 C 0.063 3.937 13 C -0.105 4.105 14 H 0.098 0.902 15 C -0.146 4.146 16 C 0.129 3.871 17 H 0.097 0.903 18 N -0.685 5.685 19 C 0.646 3.354 20 O -0.592 6.592 21 O -0.370 6.370 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.117 4.117 27 C -0.169 4.169 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.384 0.616 35 H -0.303 1.303 36 H -0.276 1.276 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.416 0.584 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.087 0.913 52 H 0.060 0.940 53 H 0.121 0.879 54 H 0.092 0.908 55 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 2.225 -0.067 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.021 4.021 4 C -0.159 4.159 5 C -0.186 4.186 6 O -0.354 6.354 7 Si 0.667 3.333 8 C -0.098 4.098 9 C -0.230 4.230 10 C 0.085 3.915 11 O -0.242 6.242 12 C -0.011 4.011 13 C -0.123 4.123 14 H 0.117 0.883 15 C -0.184 4.184 16 C 0.025 3.975 17 H 0.115 0.885 18 N -0.344 5.344 19 C 0.399 3.601 20 O -0.483 6.483 21 O -0.285 6.285 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.195 4.195 25 C -0.237 4.237 26 C -0.155 4.155 27 C -0.187 4.187 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.137 0.863 34 H 0.233 0.767 35 H -0.232 1.232 36 H -0.203 1.203 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.253 0.747 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.106 0.894 52 H 0.079 0.921 53 H 0.139 0.861 54 H 0.111 0.889 55 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.804 2.460 0.354 2.612 hybrid contribution 1.318 -0.748 -0.151 1.523 sum 2.121 1.712 0.203 2.733 Atomic orbital electron populations 1.21750 0.93692 1.02503 1.02374 1.20651 0.97007 0.91806 1.03481 1.19657 0.94910 0.96144 0.91384 1.20043 1.05465 0.95125 0.95301 1.25144 0.93983 1.00127 0.99323 1.86561 1.21334 1.36503 1.90972 0.94078 0.85271 0.79262 0.74703 1.21111 0.96209 0.93872 0.98567 1.21393 1.08060 1.02035 0.91505 1.19139 0.94636 0.92418 0.85295 1.86068 1.79869 1.29582 1.28714 1.23068 0.99810 0.79846 0.98389 1.22600 0.98099 0.96925 0.94683 0.88336 1.23586 0.97219 0.97521 1.00102 1.21908 0.95077 0.99344 0.81156 0.88477 1.44397 1.41586 1.44348 1.04065 1.18316 0.80042 0.80002 0.81710 1.90902 1.34054 1.36702 1.86629 1.86313 1.61687 1.64723 1.15737 1.22368 0.95141 0.92043 0.81390 1.22471 1.02621 0.94276 1.04307 1.21894 1.00448 1.02709 0.94431 1.22474 0.94843 1.02444 1.03970 1.23318 1.00649 0.94448 0.97082 1.20466 1.05829 0.93528 0.98893 0.91555 0.91894 0.92607 0.90932 0.90108 0.86298 0.76679 1.23166 1.20266 0.83877 0.83194 0.90274 0.90465 0.92314 0.87859 0.74712 0.91868 0.89432 0.91734 0.91282 0.88261 0.91114 0.91785 0.89394 0.92081 0.86068 0.88947 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.09 9.77 71.98 0.70 0.80 16 2 C -0.09 -0.13 5.43 29.85 0.16 0.03 16 3 C -0.02 -0.06 5.13 -19.88 -0.10 -0.16 16 4 C -0.16 -0.16 5.26 -19.85 -0.10 -0.26 16 5 C -0.08 0.01 1.91 71.24 0.14 0.14 16 6 O -0.55 -1.38 11.91 -148.98 -1.77 -3.15 16 7 Si 0.76 -1.45 30.24 68.60 2.07 0.62 16 8 C -0.08 0.06 8.65 22.25 0.19 0.25 16 9 C -0.21 0.09 9.04 22.37 0.20 0.30 16 10 C 0.13 0.38 6.69 22.51 0.15 0.53 16 11 O -0.33 -0.80 10.14 -92.40 -0.94 -1.73 16 12 C 0.06 -0.28 4.57 71.98 0.33 0.04 16 13 C -0.10 0.56 3.88 -10.27 -0.04 0.52 16 14 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 15 C -0.15 0.36 7.44 31.18 0.23 0.59 16 16 C 0.13 -0.28 4.33 45.58 0.20 -0.08 16 17 H 0.10 0.10 7.46 -2.39 -0.02 0.08 16 18 N -0.68 -0.17 5.26 -567.33 -2.99 -3.16 16 19 C 0.65 4.36 8.06 129.79 1.05 5.41 16 20 O -0.59 -7.10 11.48 19.83 0.23 -6.87 16 21 O -0.37 -2.11 9.94 -55.48 -0.55 -2.66 16 22 C 0.13 0.40 1.13 -10.79 -0.01 0.38 16 23 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 24 C -0.14 0.26 8.85 71.98 0.64 0.90 16 25 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 26 C -0.12 0.95 7.39 31.12 0.23 1.18 16 27 C -0.17 -0.67 9.62 22.37 0.22 -0.46 16 28 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 29 H 0.06 -0.10 6.67 -2.39 -0.02 -0.12 16 30 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.07 0.07 8.05 -2.38 -0.02 0.05 16 32 H 0.08 0.24 6.43 -2.39 -0.02 0.23 16 33 H 0.12 -0.11 5.90 -2.39 -0.01 -0.12 16 34 H 0.38 -1.07 8.70 -74.06 -0.64 -1.71 16 35 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 36 H -0.28 -0.17 6.68 99.48 0.66 0.50 16 37 H 0.14 -0.59 4.85 -2.91 -0.01 -0.60 16 38 H 0.15 -0.80 6.30 -2.91 -0.02 -0.82 16 39 H 0.08 -0.54 7.38 -2.39 -0.02 -0.56 16 40 H 0.08 -0.52 7.67 -2.38 -0.02 -0.54 16 41 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.10 -0.40 7.92 -2.38 -0.02 -0.42 16 43 H 0.42 -1.61 8.81 -92.70 -0.82 -2.42 16 44 H 0.06 0.14 8.14 -2.39 -0.02 0.13 16 45 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 47 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 49 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 50 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 51 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 52 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 53 H 0.12 -1.35 8.10 -2.39 -0.02 -1.37 16 54 H 0.09 -0.86 8.14 -2.38 -0.02 -0.88 16 55 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 Total: 0.00 -17.16 428.43 0.87 -16.29 By element: Atomic # 1 Polarization: -8.89 SS G_CDS: -0.56 Total: -9.45 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.38 Total: 10.11 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -2.99 Total: -3.16 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -3.03 Total: -14.42 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: 2.07 Total: 0.62 kcal Total: -17.16 0.87 -16.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_15734082.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.835 kcal (2) G-P(sol) polarization free energy of solvation -17.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds