Wall clock time and date at job start Mon Mar 8 2021 15:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47306 * 2 1 4 4 C 1.38236 * 119.97246 * 84.99620 * 3 2 1 5 5 C 1.50699 * 119.94796 * 0.02562 * 4 3 2 6 6 O 1.42910 * 109.47290 * 74.97197 * 5 4 3 7 7 Si 1.86300 * 109.47532 * 194.97501 * 5 4 3 8 8 C 1.38290 * 120.11070 * 179.97438 * 4 3 2 9 9 C 1.38121 * 120.05384 * 0.02562 * 8 4 3 10 10 C 1.38751 * 119.94492 * 0.02562 * 9 8 4 11 11 O 1.35902 * 120.05322 * 180.02562 * 10 9 8 12 12 C 1.42900 * 117.00143 * 0.02562 * 11 10 9 13 13 C 1.52998 * 109.46923 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47655 * 54.99345 * 13 12 11 15 15 C 1.52998 * 109.47106 * 174.99961 * 13 12 11 16 16 C 1.52998 * 109.47429 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46788 * 299.99799 * 16 15 13 18 18 H 1.09008 * 109.47201 * 299.99563 * 17 16 15 19 19 O 1.42903 * 109.47256 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.47329 * 59.99953 * 17 16 15 21 21 C 1.52998 * 109.46901 * 299.99578 * 20 17 16 22 22 C 1.38172 * 119.96589 * 265.29475 * 3 2 1 23 23 H 1.09001 * 109.46714 * 59.99893 * 1 2 3 24 24 H 1.08992 * 109.46980 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47023 * 300.00201 * 1 2 3 26 26 H 1.08997 * 109.47150 * 239.99290 * 2 1 3 27 27 H 1.09001 * 109.46714 * 120.00107 * 2 1 3 28 28 H 1.08999 * 109.47048 * 314.97760 * 5 4 3 29 29 H 0.96698 * 113.99839 * 180.02562 * 6 5 4 30 30 H 1.48497 * 109.99848 * 300.00165 * 7 5 4 31 31 H 1.48498 * 109.99487 * 61.31771 * 7 5 4 32 32 H 1.07996 * 119.97180 * 180.02562 * 8 4 3 33 33 H 1.07996 * 120.02430 * 180.02562 * 9 8 4 34 34 H 1.08993 * 109.47628 * 59.99737 * 12 11 10 35 35 H 1.09006 * 109.46786 * 299.99875 * 12 11 10 36 36 H 1.08997 * 109.47366 * 59.99207 * 15 13 12 37 37 H 1.09009 * 109.46785 * 299.99476 * 15 13 12 38 38 H 1.08997 * 109.47384 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47329 * 59.99386 * 16 15 13 40 40 H 0.96700 * 114.00311 * 180.02562 * 19 17 16 41 41 H 1.08997 * 109.47215 * 60.00152 * 20 17 16 42 42 H 1.08999 * 109.47164 * 180.02562 * 20 17 16 43 43 H 1.08997 * 109.47655 * 300.00305 * 21 20 17 44 44 H 1.09005 * 109.46908 * 179.97438 * 21 20 17 45 45 H 1.07997 * 120.02961 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1642 2.1067 1.1929 5 6 1.8057 1.4324 2.4921 6 8 2.8284 0.4973 2.8415 7 14 1.6508 2.7141 3.8352 8 6 2.6254 3.4104 1.1963 9 6 2.9551 4.0306 0.0070 10 6 2.8228 3.3446 -1.1918 11 8 3.1471 3.9525 -2.3632 12 6 3.6185 5.2993 -2.2865 13 6 3.9300 5.8116 -3.6941 14 1 3.0499 5.6945 -4.3264 15 6 4.3152 7.2906 -3.6249 16 6 4.6273 7.8028 -5.0325 17 6 5.7893 7.0002 -5.6211 18 1 6.6692 7.1173 -4.9885 19 8 6.0812 7.4789 -6.9356 20 6 5.4041 5.5211 -5.6904 21 6 5.0921 5.0090 -4.2828 22 6 2.3551 2.0387 -1.1930 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.8570 0.9077 2.3793 29 1 2.6633 0.0248 3.6689 30 1 2.9379 3.4365 3.9986 31 1 0.5688 3.6739 3.4987 32 1 2.7279 3.9441 2.1296 33 1 3.3157 5.0486 0.0102 34 1 4.5226 5.3338 -1.6786 35 1 2.8517 5.9274 -1.8330 36 1 5.1953 7.4077 -2.9926 37 1 3.4875 7.8624 -3.2051 38 1 4.9013 8.8566 -4.9832 39 1 3.7475 7.6857 -5.6651 40 1 6.8091 7.0142 -7.3708 41 1 4.5243 5.4039 -6.3230 42 1 6.2321 4.9492 -6.1093 43 1 5.9719 5.1261 -3.6501 44 1 4.8172 3.9553 -4.3322 45 1 2.2478 1.5039 -2.1250 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_16737254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:08:02 Heat of formation + Delta-G solvation = -117.581610 kcal Electronic energy + Delta-G solvation = -23792.631860 eV Core-core repulsion = 20354.772948 eV Total energy + Delta-G solvation = -3437.858911 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.171 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47114 -40.29836 -39.20096 -37.32362 -36.66714 -34.85527 -32.61792 -31.91082 -31.33103 -30.44455 -27.14641 -25.98147 -24.79865 -23.86088 -22.97900 -22.46521 -21.22695 -20.95940 -18.76730 -18.38230 -18.22150 -17.62220 -17.09862 -16.70996 -16.38110 -15.90247 -15.64663 -15.54102 -15.21368 -14.81364 -14.72577 -14.46586 -14.22183 -14.19347 -13.88190 -13.72282 -13.52859 -13.33894 -13.28507 -13.07760 -12.70175 -12.47401 -12.24437 -12.19912 -12.03363 -11.90953 -11.81633 -11.70910 -11.60770 -11.55174 -11.17318 -10.76028 -10.24233 -9.81098 -9.13282 -4.99088 0.31321 0.33274 1.28948 1.62689 1.96606 2.10202 2.61683 3.11693 3.46358 3.53776 3.61535 3.64383 3.73805 3.77480 3.98343 3.99509 4.04371 4.08983 4.14527 4.18827 4.25746 4.27054 4.32500 4.37596 4.40729 4.42872 4.46447 4.54905 4.60370 4.71250 4.73720 4.87332 4.93144 4.97401 5.01613 5.03526 5.08101 5.08311 5.09824 5.23305 5.25534 5.33260 5.34459 5.35422 5.62731 5.74843 6.40753 6.64682 6.67682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.013 4.013 4 C -0.112 4.112 5 C -0.064 4.064 6 O -0.544 6.544 7 Si 0.676 3.324 8 C -0.079 4.079 9 C -0.210 4.210 10 C 0.143 3.857 11 O -0.310 6.310 12 C 0.062 3.938 13 C -0.087 4.087 14 H 0.085 0.915 15 C -0.110 4.110 16 C -0.111 4.111 17 C 0.103 3.897 18 H 0.055 0.945 19 O -0.569 6.569 20 C -0.152 4.152 21 C -0.111 4.111 22 C -0.151 4.151 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.380 0.620 30 H -0.252 1.252 31 H -0.256 1.256 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.379 0.621 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -1.581 2.952 3.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.013 4.013 4 C -0.113 4.113 5 C -0.175 4.175 6 O -0.350 6.350 7 Si 0.578 3.422 8 C -0.096 4.096 9 C -0.229 4.229 10 C 0.097 3.903 11 O -0.223 6.223 12 C -0.013 4.013 13 C -0.106 4.106 14 H 0.104 0.896 15 C -0.148 4.148 16 C -0.149 4.149 17 C 0.044 3.956 18 H 0.073 0.927 19 O -0.375 6.375 20 C -0.190 4.190 21 C -0.149 4.149 22 C -0.169 4.169 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.227 0.773 30 H -0.177 1.177 31 H -0.180 1.180 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.226 0.774 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.003 -0.156 2.534 2.730 hybrid contribution 0.571 -0.222 -0.504 0.794 sum -0.432 -0.379 2.029 2.109 Atomic orbital electron populations 1.21772 0.94417 1.02150 1.02207 1.20664 0.96232 0.91948 1.04039 1.19543 0.94819 0.95841 0.91086 1.19050 1.04618 0.94078 0.93527 1.24609 0.93262 0.99570 1.00055 1.86518 1.45815 1.57130 1.45543 0.95485 0.80694 0.79923 0.86100 1.20758 0.96944 0.94437 0.97478 1.21122 1.08504 1.01276 0.92005 1.18964 0.94361 0.92351 0.84633 1.86064 1.79574 1.28357 1.28329 1.22925 0.98923 0.80830 0.98630 1.21231 0.99850 0.94947 0.94552 0.89634 1.21478 1.02120 0.94128 0.97048 1.21435 0.98112 0.99847 0.95467 1.21846 0.97265 0.92532 0.83957 0.92735 1.86517 1.57564 1.63304 1.30113 1.22277 1.02553 0.96300 0.97844 1.21515 0.97582 1.00209 0.95566 1.20349 1.04992 0.92888 0.98719 0.92469 0.91881 0.92529 0.90749 0.89292 0.90851 0.77283 1.17671 1.18022 0.86060 0.85240 0.91779 0.91765 0.91275 0.90769 0.90798 0.90913 0.77363 0.90912 0.91485 0.91770 0.90678 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 9.78 37.16 0.36 0.41 16 2 C -0.09 -0.07 5.43 -27.88 -0.15 -0.22 16 3 C -0.01 -0.03 5.13 -104.65 -0.54 -0.57 16 4 C -0.11 -0.34 5.29 -104.60 -0.55 -0.89 16 5 C -0.06 -0.03 1.91 36.01 0.07 0.04 16 6 O -0.54 -0.17 11.88 -35.23 -0.42 -0.58 16 7 Si 0.68 -0.36 30.19 -169.99 -5.13 -5.50 16 8 C -0.08 -0.26 8.65 -39.60 -0.34 -0.60 16 9 C -0.21 -0.59 9.04 -39.43 -0.36 -0.94 16 10 C 0.14 0.46 6.69 -39.22 -0.26 0.20 16 11 O -0.31 -0.80 9.67 -19.43 -0.19 -0.99 16 12 C 0.06 0.01 4.12 37.16 0.15 0.16 16 13 C -0.09 0.05 2.43 -90.62 -0.22 -0.17 16 14 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 15 C -0.11 0.15 5.20 -26.73 -0.14 0.01 16 16 C -0.11 0.00 5.57 -26.73 -0.15 -0.15 16 17 C 0.10 0.01 3.47 -26.73 -0.09 -0.08 16 18 H 0.05 -0.02 8.14 -51.92 -0.42 -0.45 16 19 O -0.57 -0.77 13.32 -35.23 -0.47 -1.23 16 20 C -0.15 0.07 5.55 -26.73 -0.15 -0.08 16 21 C -0.11 0.04 5.10 -26.73 -0.14 -0.10 16 22 C -0.15 -0.45 9.62 -39.43 -0.38 -0.83 16 23 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 24 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.06 -0.02 6.67 -51.93 -0.35 -0.37 16 26 H 0.07 0.02 8.05 -51.93 -0.42 -0.40 16 27 H 0.09 0.07 6.43 -51.93 -0.33 -0.26 16 28 H 0.07 -0.08 5.90 -51.93 -0.31 -0.39 16 29 H 0.38 -1.78 8.74 45.56 0.40 -1.38 16 30 H -0.25 -0.60 6.74 56.52 0.38 -0.22 16 31 H -0.26 -0.54 7.11 56.52 0.40 -0.14 16 32 H 0.12 0.32 4.89 -52.49 -0.26 0.06 16 33 H 0.13 0.11 6.30 -52.49 -0.33 -0.22 16 34 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 35 H 0.06 -0.04 7.66 -51.93 -0.40 -0.44 16 36 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.07 -0.14 8.14 -51.92 -0.42 -0.57 16 38 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 40 H 0.38 -0.95 9.08 45.56 0.41 -0.53 16 41 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 43 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 44 H 0.07 0.05 7.82 -51.93 -0.41 -0.35 16 45 H 0.13 0.24 8.06 -52.49 -0.42 -0.18 16 LS Contribution 348.72 15.07 5.26 5.26 Total: 0.00 -6.63 348.72 -10.51 -17.14 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: -6.67 Total: -10.27 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.88 Total: -3.83 kcal Atomic # 8 Polarization: -1.73 SS G_CDS: -1.08 Total: -2.81 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.13 Total: -5.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -6.63 -10.51 -17.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_16737254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.438 kcal (2) G-P(sol) polarization free energy of solvation -6.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds