Wall clock time and date at job start Mon Mar 8 2021 15:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50705 * 109.47040 * 2 1 4 4 C 1.38130 * 119.96955 * 265.25360 * 3 2 1 5 5 C 1.38754 * 119.93901 * 180.25049 * 4 3 2 6 6 O 1.35894 * 120.05313 * 179.74293 * 5 4 3 7 7 C 1.42906 * 117.00187 * 179.73128 * 6 5 4 8 8 C 1.50693 * 109.47463 * 180.02562 * 7 6 5 9 9 C 1.38233 * 120.00207 * 89.99418 * 8 7 6 10 10 C 1.38234 * 120.00037 * 179.72405 * 9 8 7 11 11 C 1.38234 * 120.00240 * 0.26327 * 10 9 8 12 12 Si 1.86795 * 120.00205 * 180.02562 * 11 10 9 13 13 C 1.86297 * 109.47192 * 89.99958 * 12 11 10 14 14 C 1.86301 * 109.47283 * 209.99980 * 12 11 10 15 15 C 1.86301 * 109.47118 * 329.99845 * 12 11 10 16 16 C 1.38238 * 119.99693 * 359.97438 * 11 10 9 17 17 C 1.38234 * 120.00067 * 0.02562 * 16 11 10 18 18 C 1.38710 * 119.89182 * 359.47921 * 5 4 3 19 19 C 1.38169 * 119.94203 * 0.26882 * 18 5 4 20 20 C 1.38252 * 120.05802 * 0.02562 * 19 18 5 21 21 C 1.50692 * 119.94626 * 180.02562 * 20 19 18 22 22 O 1.42894 * 109.47250 * 104.99920 * 21 20 19 23 23 Si 1.86307 * 109.47284 * 345.00184 * 21 20 19 24 24 H 1.48501 * 109.47133 * 59.99541 * 23 21 20 25 25 H 1.48493 * 109.47282 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46836 * 300.00170 * 23 21 20 27 27 H 1.08996 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46669 * 300.00170 * 1 2 3 29 29 H 1.08999 * 109.46644 * 59.99799 * 1 2 3 30 30 H 1.08999 * 109.47321 * 240.00208 * 2 1 3 31 31 H 1.08999 * 109.47300 * 119.99830 * 2 1 3 32 32 H 1.07995 * 120.02877 * 0.02806 * 4 3 2 33 33 H 1.09000 * 109.46902 * 60.00273 * 7 6 5 34 34 H 1.09001 * 109.46622 * 300.00169 * 7 6 5 35 35 H 1.08002 * 120.00157 * 0.02562 * 9 8 7 36 36 H 1.07999 * 120.00009 * 180.28389 * 10 9 8 37 37 H 1.08999 * 109.47282 * 60.00138 * 13 12 11 38 38 H 1.08997 * 109.47709 * 179.97438 * 13 12 11 39 39 H 1.09001 * 109.47505 * 300.00288 * 13 12 11 40 40 H 1.08998 * 109.47270 * 60.00089 * 14 12 11 41 41 H 1.08997 * 109.47416 * 180.02562 * 14 12 11 42 42 H 1.09006 * 109.46995 * 300.00168 * 14 12 11 43 43 H 1.09002 * 109.46976 * 60.00696 * 15 12 11 44 44 H 1.09005 * 109.47230 * 179.97438 * 15 12 11 45 45 H 1.08998 * 109.47233 * 299.99787 * 15 12 11 46 46 H 1.08001 * 119.99624 * 180.02562 * 16 11 10 47 47 H 1.07999 * 120.00008 * 180.02562 * 17 16 11 48 48 H 1.07995 * 120.03345 * 180.29458 * 18 5 4 49 49 H 1.07998 * 119.97444 * 180.02562 * 19 18 5 50 50 H 1.08999 * 109.47290 * 225.00609 * 21 20 19 51 51 H 0.96697 * 114.00235 * 300.00457 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3557 2.0384 -1.1925 5 6 2.8231 3.3449 -1.1913 6 8 3.1469 3.9529 -2.3627 7 6 3.6158 5.3007 -2.2863 8 6 3.9224 5.8054 -3.6727 9 6 2.9385 6.4339 -4.4127 10 6 3.2213 6.9020 -5.6823 11 6 4.4866 6.7366 -6.2140 12 14 4.8690 7.3697 -7.9293 13 6 5.4833 9.1251 -7.8207 14 6 6.1804 6.2999 -8.7081 15 6 3.3246 7.3154 -8.9699 16 6 5.4692 6.1036 -5.4758 17 6 5.1863 5.6356 -4.2063 18 6 2.9541 4.0311 0.0070 19 6 2.6244 3.4106 1.1966 20 6 2.1647 2.1068 1.1934 21 6 1.8053 1.4327 2.4923 22 8 0.3833 1.3612 2.6144 23 14 2.5020 2.4136 3.9148 24 1 1.9340 3.7856 3.8952 25 1 2.1483 1.7490 5.1947 26 1 3.9797 2.4879 3.7879 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2483 1.5037 -2.1246 33 1 4.5196 5.3369 -1.6780 34 1 2.8476 5.9274 -1.8334 35 1 1.9501 6.5637 -3.9972 36 1 2.4539 7.3971 -6.2587 37 1 6.3869 9.1569 -7.2119 38 1 5.7069 9.4945 -8.8215 39 1 4.7160 9.7511 -7.3650 40 1 5.8210 5.2729 -8.7717 41 1 6.4039 6.6696 -9.7088 42 1 7.0840 6.3317 -8.0992 43 1 2.5574 7.9415 -8.5143 44 1 3.5477 7.6853 -9.9707 45 1 2.9653 6.2884 -9.0335 46 1 6.4578 5.9748 -5.8911 47 1 5.9541 5.1415 -3.6294 48 1 3.3132 5.0496 0.0101 49 1 2.7258 3.9446 2.1299 50 1 2.2223 0.4257 2.5067 51 1 -0.0557 2.2227 2.6090 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14047408_9276060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 15:15:24 Heat of formation + Delta-G solvation = -76.659908 kcal Electronic energy + Delta-G solvation = -26834.406937 eV Core-core repulsion = 23207.657192 eV Total energy + Delta-G solvation = -3626.749746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44959 -40.22528 -39.14169 -37.16222 -34.77215 -33.27322 -31.90528 -31.62923 -30.41226 -29.59736 -28.46326 -28.43669 -27.51053 -26.10196 -24.80752 -23.50334 -23.05678 -22.26667 -21.29861 -18.83530 -18.41651 -17.74207 -17.13572 -17.02926 -16.60020 -16.18233 -15.88891 -15.75505 -15.50426 -15.08708 -14.71317 -14.55574 -14.38614 -14.24715 -14.19322 -14.13743 -13.97047 -13.89002 -13.82871 -13.61129 -13.48946 -13.28236 -13.27346 -13.12368 -13.01198 -12.78117 -12.44265 -12.25881 -12.13848 -12.09371 -11.96917 -11.71755 -11.58264 -11.34787 -11.06026 -10.92680 -10.85451 -10.28912 -9.80180 -9.77613 -9.71053 -9.11515 0.15110 0.33926 0.36394 0.52654 1.16793 1.40527 1.52563 1.67959 1.82648 1.87034 1.91446 2.28192 2.52187 2.68006 3.01681 3.48766 3.63368 3.73324 3.77510 3.86508 3.89854 4.05147 4.14785 4.20201 4.24808 4.27619 4.45186 4.49030 4.57058 4.58359 4.65149 4.68086 4.69283 4.69446 4.73220 4.73806 4.74337 4.74942 4.89393 4.98098 5.01287 5.13189 5.13662 5.19912 5.31114 5.33342 5.39265 5.44229 5.48265 5.51479 5.60075 5.60294 5.60756 5.68131 5.79353 6.09015 6.42817 6.56281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.011 4.011 4 C -0.151 4.151 5 C 0.141 3.859 6 O -0.307 6.307 7 C 0.100 3.900 8 C -0.089 4.089 9 C -0.106 4.106 10 C -0.092 4.092 11 C -0.361 4.361 12 Si 1.060 2.940 13 C -0.449 4.449 14 C -0.450 4.450 15 C -0.450 4.450 16 C -0.092 4.092 17 C -0.106 4.106 18 C -0.211 4.211 19 C -0.083 4.083 20 C -0.158 4.158 21 C -0.072 4.072 22 O -0.534 6.534 23 Si 0.946 3.054 24 H -0.254 1.254 25 H -0.254 1.254 26 H -0.251 1.251 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.129 0.871 49 H 0.125 0.875 50 H 0.116 0.884 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.770 2.081 -0.798 2.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.122 4.122 3 C -0.011 4.011 4 C -0.170 4.170 5 C 0.095 3.905 6 O -0.221 6.221 7 C 0.026 3.974 8 C -0.089 4.089 9 C -0.124 4.124 10 C -0.110 4.110 11 C -0.402 4.402 12 Si 1.252 2.748 13 C -0.556 4.556 14 C -0.558 4.558 15 C -0.558 4.558 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.230 4.230 19 C -0.100 4.100 20 C -0.159 4.159 21 C -0.183 4.183 22 O -0.339 6.339 23 Si 0.769 3.231 24 H -0.178 1.178 25 H -0.178 1.178 26 H -0.174 1.174 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.150 0.850 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.147 0.853 49 H 0.142 0.858 50 H 0.134 0.866 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.223 1.829 -0.212 2.211 hybrid contribution -0.148 0.560 -0.121 0.592 sum 1.074 2.389 -0.333 2.641 Atomic orbital electron populations 1.21910 0.93795 1.02103 1.03367 1.20583 0.97173 0.91610 1.02845 1.19553 0.94372 0.96053 0.91129 1.20360 1.04890 0.92892 0.98812 1.19014 0.94414 0.92379 0.84670 1.86176 1.79625 1.27758 1.28514 1.21642 0.99479 0.81257 0.95044 1.19457 0.94576 0.99970 0.94893 1.21148 0.98401 0.98049 0.94831 1.21081 0.96820 0.98227 0.94837 1.27486 0.95679 1.02315 1.14761 0.78180 0.67139 0.66811 0.62707 1.26122 1.06323 1.18645 1.04554 1.26137 1.12293 1.09987 1.07344 1.26137 1.15433 1.04683 1.09506 1.21082 0.99256 0.96775 0.93851 1.21150 0.96146 0.99051 0.96082 1.21147 1.08563 1.01202 0.92081 1.20878 0.97185 0.94148 0.97835 1.19994 1.05371 0.94837 0.95706 1.24840 0.86200 1.06939 1.00329 1.86500 1.17108 1.34351 1.95926 0.85755 0.80529 0.78890 0.77886 1.17768 1.17777 1.17420 0.92654 0.89815 0.93230 0.91228 0.90445 0.85009 0.91003 0.91019 0.86136 0.85872 0.91172 0.90997 0.91166 0.91023 0.90924 0.91174 0.91173 0.90924 0.91022 0.85874 0.86133 0.85278 0.85777 0.86596 0.77849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.11 9.85 37.16 0.37 0.26 16 2 C -0.08 -0.04 5.55 -27.88 -0.15 -0.20 16 3 C -0.01 -0.02 5.13 -104.64 -0.54 -0.55 16 4 C -0.15 -0.36 9.62 -39.43 -0.38 -0.74 16 5 C 0.14 0.36 6.69 -39.22 -0.26 0.10 16 6 O -0.31 -0.92 10.12 -19.41 -0.20 -1.11 16 7 C 0.10 0.07 4.86 36.00 0.18 0.25 16 8 C -0.09 -0.14 5.51 -104.63 -0.58 -0.71 16 9 C -0.11 -0.13 9.70 -39.58 -0.38 -0.51 16 10 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 11 C -0.36 0.02 4.59 -39.58 -0.18 -0.16 16 12 Si 1.06 -2.64 12.32 -169.99 -2.09 -4.73 16 13 C -0.45 0.71 8.65 101.05 0.87 1.59 16 14 C -0.45 0.77 8.53 101.05 0.86 1.63 16 15 C -0.45 0.77 8.53 101.05 0.86 1.64 16 16 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 17 C -0.11 -0.13 9.70 -39.58 -0.38 -0.52 16 18 C -0.21 -0.27 9.04 -39.43 -0.36 -0.63 16 19 C -0.08 -0.07 8.65 -39.60 -0.34 -0.42 16 20 C -0.16 -0.15 5.26 -104.60 -0.55 -0.70 16 21 C -0.07 0.02 2.07 36.00 0.07 0.10 16 22 O -0.53 0.13 10.17 -35.23 -0.36 -0.23 16 23 Si 0.95 -0.38 25.49 -169.99 -4.33 -4.72 16 24 H -0.25 0.11 6.73 56.52 0.38 0.50 16 25 H -0.25 -0.26 7.11 56.52 0.40 0.15 16 26 H -0.25 -0.14 7.11 56.52 0.40 0.27 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 28 H 0.08 0.09 5.32 -51.93 -0.28 -0.18 16 29 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.07 0.00 8.05 -51.93 -0.42 -0.41 16 31 H 0.08 0.00 6.43 -51.93 -0.33 -0.33 16 32 H 0.13 0.24 8.06 -52.49 -0.42 -0.19 16 33 H 0.07 -0.04 7.61 -51.93 -0.40 -0.43 16 34 H 0.07 -0.04 7.60 -51.93 -0.39 -0.43 16 35 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 36 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 42 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 43 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 44 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 45 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 46 H 0.12 -0.18 7.43 -52.49 -0.39 -0.57 16 47 H 0.12 0.00 8.06 -52.49 -0.42 -0.43 16 48 H 0.13 -0.07 6.30 -52.49 -0.33 -0.40 16 49 H 0.12 -0.07 4.88 -52.49 -0.26 -0.33 16 50 H 0.12 -0.11 6.53 -51.93 -0.34 -0.45 16 51 H 0.37 -1.13 8.70 45.56 0.40 -0.74 16 LS Contribution 407.42 15.07 6.14 6.14 Total: 0.00 -5.32 407.42 -10.22 -15.55 By element: Atomic # 1 Polarization: -2.75 SS G_CDS: -7.75 Total: -10.50 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.63 Total: -0.40 kcal Atomic # 8 Polarization: -0.79 SS G_CDS: -0.55 Total: -1.34 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: -6.43 Total: -9.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -5.32 -10.22 -15.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14047408_9276060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.114 kcal (2) G-P(sol) polarization free energy of solvation -5.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds