Wall clock time and date at job start Mon Mar 8 2021 13:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46753 * 2 1 4 4 C 1.52994 * 109.46901 * 240.00047 * 2 1 3 5 5 Si 1.86302 * 109.47206 * 119.99793 * 2 1 3 6 6 C 1.86298 * 109.47198 * 299.99861 * 5 2 1 7 7 C 1.86307 * 109.46847 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46906 * 59.99905 * 5 2 1 9 9 C 1.42904 * 113.99711 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.46825 * 180.02562 * 9 8 5 11 11 O 1.42897 * 109.47635 * 65.00315 * 10 9 8 12 12 C 1.35938 * 117.00400 * 179.97438 * 11 10 9 13 13 C 1.38676 * 120.01827 * 359.97438 * 12 11 10 14 14 C 1.38359 * 119.94555 * 180.02562 * 13 12 11 15 15 F 1.35093 * 120.00918 * 180.02562 * 14 13 12 16 16 C 1.38651 * 119.98472 * 0.02562 * 14 13 12 17 17 F 1.35095 * 119.98016 * 179.97438 * 16 14 13 18 18 C 1.38415 * 120.04227 * 359.97438 * 16 14 13 19 19 C 1.38158 * 120.05168 * 359.97438 * 18 16 14 20 20 C 1.50698 * 119.99358 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47410 * 105.00113 * 20 19 18 22 22 Si 1.86304 * 109.47095 * 344.99877 * 20 19 18 23 23 H 1.48500 * 109.46793 * 60.00199 * 22 20 19 24 24 H 1.48498 * 109.47630 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47292 * 300.00343 * 22 20 19 26 26 H 1.09002 * 109.47232 * 299.99962 * 1 2 3 27 27 H 1.09002 * 109.47403 * 59.99775 * 1 2 3 28 28 H 1.08995 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46760 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46917 * 299.99942 * 3 2 1 31 31 H 1.08997 * 109.47673 * 60.00096 * 3 2 1 32 32 H 1.09003 * 109.47203 * 299.99708 * 4 2 1 33 33 H 1.09003 * 109.47421 * 59.99659 * 4 2 1 34 34 H 1.09007 * 109.47118 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47347 * 179.97438 * 6 5 2 36 36 H 1.09003 * 109.47375 * 300.00138 * 6 5 2 37 37 H 1.09007 * 109.47146 * 60.00111 * 6 5 2 38 38 H 1.08998 * 109.46527 * 299.99966 * 7 5 2 39 39 H 1.08995 * 109.47486 * 59.99806 * 7 5 2 40 40 H 1.08994 * 109.46793 * 180.02562 * 7 5 2 41 41 H 1.08995 * 109.46913 * 60.00406 * 9 8 5 42 42 H 1.09004 * 109.47394 * 299.99873 * 9 8 5 43 43 H 1.09001 * 109.47174 * 304.99787 * 10 9 8 44 44 H 1.09005 * 109.46525 * 185.00096 * 10 9 8 45 45 H 1.07999 * 120.02825 * 0.04280 * 13 12 11 46 46 H 1.07997 * 119.96959 * 179.72811 * 18 16 14 47 47 H 1.09001 * 109.47426 * 225.00277 * 20 19 18 48 48 H 0.96697 * 114.00305 * 59.99964 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 14 2.1510 -0.8782 1.5212 6 6 1.5301 0.0001 3.0423 7 6 4.0141 -0.8774 1.5215 8 8 1.6073 -2.4158 1.5212 9 6 2.0295 -3.1815 2.6515 10 6 1.4646 -4.5995 2.5466 11 8 2.0330 -5.2561 1.4118 12 6 1.6342 -6.5337 1.1740 13 6 0.7155 -7.1419 2.0162 14 6 0.3110 -8.4425 1.7731 15 9 -0.5842 -9.0360 2.5924 16 6 0.8248 -9.1366 0.6883 17 9 0.4302 -10.4067 0.4513 18 6 1.7417 -8.5291 -0.1519 19 6 2.1459 -7.2300 0.0887 20 6 3.1447 -6.5700 -0.8266 21 8 2.4721 -5.6305 -1.6674 22 14 3.9720 -7.8650 -1.8800 23 1 2.9482 -8.5711 -2.6914 24 1 4.9567 -7.2148 -2.7815 25 1 4.6710 -8.8413 -1.0062 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9565 0.8899 32 1 1.6766 -1.7489 -1.2492 33 1 1.6765 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2495 35 1 1.8930 -0.5139 3.9322 36 1 1.8934 1.0278 3.0423 37 1 0.4400 0.0001 3.0423 38 1 4.3777 -1.3910 0.6315 39 1 4.3771 0.1503 1.5216 40 1 4.3774 -1.3916 2.4112 41 1 1.6654 -2.7117 3.5651 42 1 3.1184 -3.2254 2.6745 43 1 0.3815 -4.5518 2.4341 44 1 1.7118 -5.1568 3.4503 45 1 0.3159 -6.6006 2.8610 46 1 2.1444 -9.0723 -0.9940 47 1 3.8962 -6.0517 -0.2311 48 1 2.0179 -4.9260 -1.1853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14425792_10264010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:55:53 Heat of formation + Delta-G solvation = -238.399898 kcal Electronic energy + Delta-G solvation = -29822.964583 eV Core-core repulsion = 25444.515683 eV Total energy + Delta-G solvation = -4378.448899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.46871 -49.52404 -41.61940 -39.11398 -37.74669 -37.30062 -36.88284 -32.72135 -31.70526 -30.24413 -29.45417 -29.16402 -27.91154 -27.43933 -26.72426 -25.24638 -23.29083 -22.82666 -20.47944 -19.93137 -18.93619 -18.59658 -18.32274 -17.91429 -17.49945 -17.23643 -16.60662 -16.45433 -16.10454 -15.97595 -15.92806 -15.76077 -15.57695 -15.34509 -14.96339 -14.91510 -14.74712 -14.59854 -14.12259 -14.07980 -13.72627 -13.58820 -13.50768 -13.34228 -13.24962 -12.99986 -12.97157 -12.92272 -12.82961 -12.45238 -12.25212 -12.05972 -11.88763 -11.81334 -11.76823 -11.63576 -11.45966 -11.33650 -11.05902 -10.49153 -10.24435 -10.13938 -9.31155 -0.32903 -0.15302 1.17581 1.30374 1.49713 1.54343 1.64025 1.79049 1.95612 1.97453 2.10246 2.31672 2.67606 3.13815 3.28185 3.43752 3.62888 3.73491 3.79007 3.89683 3.95966 4.01443 4.07231 4.07444 4.14546 4.35835 4.41193 4.42438 4.48473 4.52908 4.56732 4.60837 4.63822 4.66158 4.73204 4.76420 4.81853 4.90713 4.95651 5.06412 5.07203 5.08781 5.22061 5.29845 5.36562 5.40901 5.44554 5.46024 5.53333 6.00829 6.62234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.374 4.374 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.290 2.710 6 C -0.514 4.514 7 C -0.511 4.511 8 O -0.619 6.619 9 C 0.086 3.914 10 C 0.052 3.948 11 O -0.293 6.293 12 C 0.168 3.832 13 C -0.219 4.219 14 C 0.116 3.884 15 F -0.121 7.121 16 C 0.038 3.962 17 F -0.125 7.125 18 C -0.090 4.090 19 C -0.128 4.128 20 C -0.080 4.080 21 O -0.535 6.535 22 Si 1.006 2.994 23 H -0.249 1.249 24 H -0.250 1.250 25 H -0.246 1.246 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.084 0.916 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 3.439 3.034 4.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.421 2.579 6 C -0.615 4.615 7 C -0.613 4.613 8 O -0.578 6.578 9 C 0.011 3.989 10 C -0.023 4.023 11 O -0.206 6.206 12 C 0.121 3.879 13 C -0.238 4.238 14 C 0.095 3.905 15 F -0.100 7.100 16 C 0.018 3.982 17 F -0.104 7.104 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.188 4.188 21 O -0.341 6.341 22 Si 0.825 3.175 23 H -0.173 1.173 24 H -0.174 1.174 25 H -0.169 1.169 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.172 0.828 46 H 0.171 0.829 47 H 0.102 0.898 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.536 2.320 1.851 3.904 hybrid contribution -0.830 0.889 1.405 1.859 sum 1.706 3.209 3.256 4.880 Atomic orbital electron populations 1.21513 0.93840 1.01978 1.01786 1.25784 1.00634 1.02602 1.12756 1.21563 1.00791 0.94946 1.02149 1.21508 1.00628 1.00307 0.96634 0.76673 0.63030 0.53194 0.65001 1.27067 1.07055 1.09688 1.17717 1.27034 1.24974 1.04767 1.04555 1.85403 1.79133 1.46080 1.47179 1.22085 0.99459 0.89409 0.87992 1.23177 0.99516 0.92161 0.87452 1.86152 1.64446 1.22451 1.47503 1.18432 0.92292 0.84542 0.92670 1.21115 1.03516 0.94874 1.04325 1.17348 0.91612 0.91684 0.89829 1.91571 1.64594 1.83444 1.70348 1.17397 1.01594 0.81560 0.97666 1.91557 1.89641 1.35130 1.94042 1.20888 0.96226 0.94517 0.99211 1.19547 1.02650 0.93795 0.96932 1.25185 0.96007 0.99597 0.98034 1.86688 1.71720 1.40855 1.34787 0.84587 0.78900 0.75463 0.78563 1.17331 1.17406 1.16900 0.92798 0.92765 0.92164 0.92505 0.92466 0.92580 0.91982 0.92820 0.92681 0.91543 0.90602 0.90839 0.90679 0.90720 0.91553 0.90165 0.91204 0.90157 0.90153 0.82794 0.82866 0.89838 0.77780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.11 7.85 37.16 0.29 0.40 16 2 C -0.37 0.47 0.53 -90.62 -0.05 0.42 16 3 C -0.14 0.18 7.85 37.16 0.29 0.47 16 4 C -0.13 0.09 7.85 37.15 0.29 0.39 16 5 Si 1.29 -3.28 8.45 -169.99 -1.44 -4.72 16 6 C -0.51 1.12 8.50 101.05 0.86 1.98 16 7 C -0.51 0.97 8.50 101.05 0.86 1.82 16 8 O -0.62 1.16 8.52 -40.07 -0.34 0.81 16 9 C 0.09 -0.30 5.51 37.16 0.20 -0.10 16 10 C 0.05 -0.17 5.12 37.16 0.19 0.02 16 11 O -0.29 0.33 9.00 -24.39 -0.22 0.11 16 12 C 0.17 -0.03 6.62 -39.24 -0.26 -0.29 16 13 C -0.22 0.08 9.01 -39.37 -0.35 -0.28 16 14 C 0.12 0.20 7.30 -39.38 -0.29 -0.09 16 15 F -0.12 -0.35 17.18 2.25 0.04 -0.32 16 16 C 0.04 0.08 7.30 -39.36 -0.29 -0.20 16 17 F -0.13 -0.45 17.18 2.25 0.04 -0.42 16 18 C -0.09 -0.09 8.63 -39.55 -0.34 -0.43 16 19 C -0.13 -0.05 5.28 -104.47 -0.55 -0.61 16 20 C -0.08 0.01 2.33 36.00 0.08 0.09 16 21 O -0.53 -0.52 12.65 -35.23 -0.45 -0.97 16 22 Si 1.01 -0.08 25.74 -169.99 -4.38 -4.45 16 23 H -0.25 -0.14 6.73 56.52 0.38 0.24 16 24 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 25 H -0.25 0.14 7.11 56.52 0.40 0.54 16 26 H 0.05 -0.07 7.79 -51.93 -0.40 -0.48 16 27 H 0.05 -0.01 8.14 -51.93 -0.42 -0.44 16 28 H 0.06 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.06 -0.10 7.79 -51.93 -0.40 -0.51 16 30 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.06 -0.11 7.79 -51.93 -0.40 -0.51 16 32 H 0.06 -0.04 7.97 -51.93 -0.41 -0.46 16 33 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.05 -0.06 7.79 -51.93 -0.40 -0.47 16 35 H 0.07 -0.18 7.48 -51.93 -0.39 -0.57 16 36 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 37 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 38 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 39 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 40 H 0.07 -0.15 7.48 -51.93 -0.39 -0.54 16 41 H 0.08 -0.45 7.21 -51.93 -0.37 -0.82 16 42 H 0.07 -0.30 7.21 -51.93 -0.37 -0.68 16 43 H 0.08 -0.30 7.66 -51.93 -0.40 -0.69 16 44 H 0.08 -0.42 7.66 -51.93 -0.40 -0.82 16 45 H 0.15 -0.41 6.30 -52.49 -0.33 -0.74 16 46 H 0.15 -0.03 4.88 -52.49 -0.26 -0.29 16 47 H 0.08 -0.12 7.82 -51.93 -0.41 -0.52 16 48 H 0.37 -0.31 8.61 45.56 0.39 0.08 16 LS Contribution 392.87 15.07 5.92 5.92 Total: 0.00 -4.51 392.87 -6.95 -11.46 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -7.07 Total: -11.03 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 0.94 Total: 3.59 kcal Atomic # 8 Polarization: 0.97 SS G_CDS: -1.01 Total: -0.04 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.08 Total: -0.73 kcal Atomic # 14 Polarization: -3.36 SS G_CDS: -5.81 Total: -9.17 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -4.51 -6.95 -11.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14425792_10264010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.940 kcal (2) G-P(sol) polarization free energy of solvation -4.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds