Wall clock time and date at job start Mon Mar 8 2021 12:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52993 * 109.47647 * 2 1 4 4 C 1.53008 * 109.46862 * 240.00242 * 2 1 3 5 5 Si 1.86303 * 109.46981 * 120.00504 * 2 1 3 6 6 C 1.86295 * 109.46844 * 299.99464 * 5 2 1 7 7 C 1.86299 * 109.46908 * 179.97438 * 5 2 1 8 8 O 1.63101 * 109.47115 * 59.99954 * 5 2 1 9 9 C 1.42899 * 113.99809 * 180.02562 * 8 5 2 10 10 C 1.52999 * 109.47121 * 179.97438 * 9 8 5 11 11 O 1.42897 * 109.47160 * 64.99311 * 10 9 8 12 12 C 1.42904 * 113.99876 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.46825 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.47635 * 65.00315 * 13 12 11 15 15 C 1.35938 * 117.00400 * 179.97438 * 14 13 12 16 16 C 1.38676 * 120.01827 * 359.97438 * 15 14 13 17 17 C 1.38359 * 119.94555 * 180.02562 * 16 15 14 18 18 F 1.35093 * 120.00918 * 180.02562 * 17 16 15 19 19 C 1.38651 * 119.98472 * 0.02562 * 17 16 15 20 20 F 1.35095 * 119.98016 * 179.97438 * 19 17 16 21 21 C 1.38415 * 120.04227 * 359.97438 * 19 17 16 22 22 C 1.38158 * 120.05168 * 359.97438 * 21 19 17 23 23 C 1.50698 * 119.99358 * 179.97438 * 22 21 19 24 24 O 1.42898 * 109.47410 * 105.00113 * 23 22 21 25 25 Si 1.86304 * 109.47095 * 344.99877 * 23 22 21 26 26 H 1.48500 * 109.46793 * 60.00199 * 25 23 22 27 27 H 1.48498 * 109.47630 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47292 * 300.00343 * 25 23 22 29 29 H 1.09003 * 109.47225 * 299.99914 * 1 2 3 30 30 H 1.09008 * 109.47069 * 59.99729 * 1 2 3 31 31 H 1.09003 * 109.47756 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47770 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47466 * 300.00340 * 3 2 1 34 34 H 1.09003 * 109.46738 * 59.99787 * 3 2 1 35 35 H 1.08998 * 109.47327 * 299.99942 * 4 2 1 36 36 H 1.08994 * 109.47172 * 60.00063 * 4 2 1 37 37 H 1.09005 * 109.46676 * 180.02562 * 4 2 1 38 38 H 1.09001 * 109.46736 * 179.97438 * 6 5 2 39 39 H 1.08998 * 109.47560 * 300.00378 * 6 5 2 40 40 H 1.09001 * 109.47173 * 60.00439 * 6 5 2 41 41 H 1.08996 * 109.47213 * 299.99794 * 7 5 2 42 42 H 1.09003 * 109.47476 * 60.00322 * 7 5 2 43 43 H 1.09008 * 109.46995 * 179.97438 * 7 5 2 44 44 H 1.08997 * 109.47304 * 59.99859 * 9 8 5 45 45 H 1.08995 * 109.46969 * 299.99474 * 9 8 5 46 46 H 1.09002 * 109.46946 * 305.00053 * 10 9 8 47 47 H 1.08992 * 109.47245 * 185.00234 * 10 9 8 48 48 H 1.08995 * 109.46913 * 60.00696 * 12 11 10 49 49 H 1.09004 * 109.47394 * 300.00163 * 12 11 10 50 50 H 1.09001 * 109.47174 * 304.99787 * 13 12 11 51 51 H 1.09005 * 109.46525 * 185.00096 * 13 12 11 52 52 H 1.07999 * 120.02825 * 0.04280 * 16 15 14 53 53 H 1.07997 * 119.96959 * 179.72811 * 21 19 17 54 54 H 1.09001 * 109.47426 * 225.00277 * 23 22 21 55 55 H 0.96697 * 114.00305 * 59.99964 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 14 2.1509 -0.8784 1.5211 6 6 1.5300 -0.0002 3.0422 7 6 4.0139 -0.8791 1.5207 8 8 1.6072 -2.4161 1.5210 9 6 2.0284 -3.1816 2.6518 10 6 1.4625 -4.5992 2.5473 11 8 2.0307 -5.2565 1.4129 12 6 1.5666 -6.5948 1.2237 13 6 2.2380 -7.1975 -0.0120 14 8 3.6435 -7.3139 0.2184 15 6 4.3929 -7.8358 -0.7885 16 6 3.7871 -8.2278 -1.9728 17 6 4.5512 -8.7593 -2.9964 18 9 3.9625 -9.1412 -4.1508 19 6 5.9213 -8.9000 -2.8372 20 9 6.6673 -9.4195 -3.8366 21 6 6.5254 -8.5085 -1.6550 22 6 5.7641 -7.9766 -0.6321 23 6 6.4230 -7.5513 0.6547 24 8 6.5015 -6.1253 0.7012 25 14 8.1393 -8.2709 0.7409 26 1 8.9396 -7.7815 -0.4103 27 1 8.7885 -7.8525 2.0092 28 1 8.0577 -9.7529 0.6927 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 1.8929 -0.5144 3.9321 39 1 1.8933 1.0275 3.0423 40 1 0.4400 -0.0001 3.0422 41 1 4.3768 -1.3931 0.6307 42 1 4.3777 0.1485 1.5206 43 1 4.3772 -1.3926 2.4109 44 1 1.6635 -2.7115 3.5650 45 1 3.1172 -3.2255 2.6756 46 1 0.3795 -4.5507 2.4343 47 1 1.7088 -5.1562 3.4512 48 1 0.4858 -6.5881 1.0835 49 1 1.8156 -7.1931 2.1002 50 1 2.0631 -6.5512 -0.8721 51 1 1.8190 -8.1845 -0.2080 52 1 2.7198 -8.1181 -2.0960 53 1 7.5921 -8.6227 -1.5305 54 1 5.8356 -7.9106 1.4998 55 1 5.6428 -5.6825 0.6605 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14425792_16896866.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:49:59 Heat of formation + Delta-G solvation = -274.685044 kcal Electronic energy + Delta-G solvation = -35870.761998 eV Core-core repulsion = 30860.982227 eV Total energy + Delta-G solvation = -5009.779771 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 392.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.64068 -49.71063 -41.59816 -39.36806 -38.54515 -37.40899 -37.26597 -36.80554 -32.78462 -32.17104 -30.66741 -29.61825 -29.14264 -29.03290 -27.82420 -27.35710 -26.76441 -25.15314 -23.39837 -23.21763 -22.80916 -20.39456 -19.93664 -19.00688 -18.68432 -18.11134 -17.97477 -17.91570 -17.54623 -17.29221 -16.54997 -16.47989 -16.24380 -16.13110 -16.09253 -15.80077 -15.73797 -15.45536 -15.35203 -15.23465 -14.83375 -14.74005 -14.66389 -14.31803 -14.14830 -13.90976 -13.69987 -13.48968 -13.33544 -13.25360 -13.14681 -13.03603 -12.93717 -12.91533 -12.78130 -12.51681 -12.39985 -12.30761 -12.19281 -11.90008 -11.82621 -11.75655 -11.65782 -11.46455 -11.36693 -11.14157 -11.07383 -10.49893 -10.28761 -10.25640 -10.02441 -9.36514 -0.38723 -0.21128 1.17124 1.49806 1.52320 1.58934 1.83637 1.88324 1.95829 2.05932 2.17597 2.53076 2.61112 2.72586 3.06398 3.25305 3.43650 3.71770 3.88966 3.91188 4.04358 4.13736 4.14224 4.14593 4.18785 4.29016 4.37272 4.39877 4.43588 4.47144 4.49345 4.52521 4.55909 4.64659 4.70832 4.73150 4.76655 4.79194 4.81562 4.82251 4.83492 4.84624 4.89226 4.89825 5.01348 5.10293 5.10828 5.22331 5.34261 5.35641 5.42530 5.46098 5.57260 5.63373 5.67353 6.05986 6.32894 6.64515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.319 2.681 6 C -0.517 4.517 7 C -0.519 4.519 8 O -0.634 6.634 9 C 0.073 3.927 10 C 0.056 3.944 11 O -0.396 6.396 12 C 0.059 3.941 13 C 0.048 3.952 14 O -0.298 6.298 15 C 0.174 3.826 16 C -0.210 4.210 17 C 0.103 3.897 18 F -0.132 7.132 19 C 0.018 3.982 20 F -0.139 7.139 21 C -0.093 4.093 22 C -0.131 4.131 23 C -0.080 4.080 24 O -0.548 6.548 25 Si 1.021 2.979 26 H -0.263 1.263 27 H -0.265 1.265 28 H -0.236 1.236 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.106 0.894 52 H 0.177 0.823 53 H 0.161 0.839 54 H 0.099 0.901 55 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -0.212 6.304 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.448 2.552 6 C -0.619 4.619 7 C -0.620 4.620 8 O -0.593 6.593 9 C -0.002 4.002 10 C -0.021 4.021 11 O -0.316 6.316 12 C -0.018 4.018 13 C -0.026 4.026 14 O -0.211 6.211 15 C 0.127 3.873 16 C -0.230 4.230 17 C 0.083 3.917 18 F -0.110 7.110 19 C -0.002 4.002 20 F -0.117 7.117 21 C -0.111 4.111 22 C -0.133 4.133 23 C -0.188 4.188 24 O -0.355 6.355 25 Si 0.842 3.158 26 H -0.187 1.187 27 H -0.189 1.189 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.124 0.876 52 H 0.194 0.806 53 H 0.178 0.822 54 H 0.117 0.883 55 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.933 -0.743 6.226 6.922 hybrid contribution -1.193 0.544 -0.929 1.607 sum -4.127 -0.198 5.297 6.718 Atomic orbital electron populations 1.21526 0.94148 1.01756 1.01804 1.25947 1.00483 1.02916 1.13278 1.21603 1.01164 0.94842 1.02202 1.21514 1.00787 0.99972 0.96932 0.76134 0.62092 0.52972 0.63969 1.27082 1.06948 1.09756 1.18068 1.27149 1.25918 1.04612 1.04346 1.85389 1.79261 1.46358 1.48337 1.22324 0.99584 0.90769 0.87530 1.22793 0.98260 0.91993 0.89008 1.87973 1.68363 1.26617 1.48599 1.22669 0.98405 0.83535 0.97147 1.23305 0.77241 1.02362 0.99689 1.86158 1.21382 1.76583 1.36990 1.18434 0.90147 0.91878 0.86888 1.21299 1.02761 1.06367 0.92526 1.17541 0.89414 1.00931 0.83855 1.91539 1.83976 1.88825 1.46674 1.17615 0.87975 1.06315 0.88306 1.91512 1.76095 1.84805 1.59329 1.20986 1.01721 0.97846 0.90547 1.19654 0.91081 1.04043 0.98497 1.25229 1.13423 0.85713 0.94413 1.86668 1.35683 1.16413 1.96698 0.84386 0.72405 0.78875 0.80129 1.18738 1.18937 1.15902 0.91945 0.93523 0.92485 0.92054 0.93247 0.91673 0.92634 0.93502 0.92501 0.90762 0.90560 0.90961 0.91654 0.90742 0.91081 0.89239 0.91491 0.91889 0.90163 0.89101 0.91127 0.90323 0.87605 0.80585 0.82179 0.88323 0.77113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 7.85 71.98 0.56 0.53 16 2 C -0.38 0.04 0.53 -10.80 -0.01 0.04 16 3 C -0.14 0.10 7.85 71.98 0.56 0.67 16 4 C -0.13 -0.23 7.85 71.98 0.56 0.34 16 5 Si 1.32 -3.36 8.45 68.60 0.58 -2.78 16 6 C -0.52 1.62 8.50 113.37 0.96 2.58 16 7 C -0.52 0.44 8.50 113.37 0.96 1.40 16 8 O -0.63 0.17 8.52 -144.33 -1.23 -1.06 16 9 C 0.07 -0.29 5.50 71.98 0.40 0.11 16 10 C 0.06 -0.27 6.32 71.98 0.45 0.19 16 11 O -0.40 0.50 10.27 -135.05 -1.39 -0.88 16 12 C 0.06 -0.40 6.32 71.98 0.45 0.05 16 13 C 0.05 -0.32 5.12 71.98 0.37 0.04 16 14 O -0.30 0.71 9.00 -88.22 -0.79 -0.09 16 15 C 0.17 -0.05 6.62 22.49 0.15 0.10 16 16 C -0.21 0.09 9.01 22.40 0.20 0.29 16 17 C 0.10 0.47 7.30 22.40 0.16 0.63 16 18 F -0.13 -0.95 17.18 44.97 0.77 -0.18 16 19 C 0.02 0.11 7.30 22.41 0.16 0.27 16 20 F -0.14 -1.28 17.18 44.97 0.77 -0.51 16 21 C -0.09 -0.28 8.63 22.29 0.19 -0.08 16 22 C -0.13 -0.17 5.28 -19.77 -0.10 -0.27 16 23 C -0.08 0.01 2.33 71.24 0.17 0.17 16 24 O -0.55 -1.39 12.65 -148.98 -1.89 -3.28 16 25 Si 1.02 0.20 25.74 68.60 1.77 1.97 16 26 H -0.26 -0.59 6.73 99.48 0.67 0.08 16 27 H -0.26 -0.65 7.11 99.48 0.71 0.06 16 28 H -0.24 0.33 7.11 99.48 0.71 1.04 16 29 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 30 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.06 0.04 7.97 -2.39 -0.02 0.02 16 32 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 33 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 35 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 36 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.06 0.06 7.79 -2.38 -0.02 0.04 16 38 H 0.07 -0.34 7.48 -2.39 -0.02 -0.36 16 39 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 40 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 41 H 0.06 0.07 7.79 -2.39 -0.02 0.05 16 42 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 43 H 0.07 -0.13 7.48 -2.38 -0.02 -0.15 16 44 H 0.09 -0.76 7.21 -2.39 -0.02 -0.78 16 45 H 0.07 -0.31 7.21 -2.39 -0.02 -0.32 16 46 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 48 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 49 H 0.07 -0.60 8.14 -2.38 -0.02 -0.62 16 50 H 0.08 -0.50 7.66 -2.39 -0.02 -0.52 16 51 H 0.11 -1.20 7.66 -2.38 -0.02 -1.22 16 52 H 0.18 -1.00 6.30 -2.91 -0.02 -1.02 16 53 H 0.16 0.12 4.88 -2.91 -0.01 0.10 16 54 H 0.10 -0.32 7.82 -2.39 -0.02 -0.34 16 55 H 0.38 -0.27 8.61 -74.06 -0.64 -0.91 16 Total: 0.00 -13.18 448.33 5.78 -7.40 By element: Atomic # 1 Polarization: -8.62 SS G_CDS: 0.97 Total: -7.65 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.22 Total: 7.06 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -5.30 Total: -5.31 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 1.55 Total: -0.69 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.35 Total: -0.81 kcal Total: -13.18 5.78 -7.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14425792_16896866.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.290 kcal (2) G-P(sol) polarization free energy of solvation -13.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -274.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds