Wall clock time and date at job start Mon Mar 8 2021 13:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35950 * 116.99607 * 180.02562 * 12 11 10 14 14 C 1.38666 * 120.01971 * 359.97438 * 13 12 11 15 15 C 1.38362 * 119.94379 * 180.02562 * 14 13 12 16 16 F 1.35104 * 120.00873 * 180.02562 * 15 14 13 17 17 C 1.38653 * 119.98405 * 0.02562 * 15 14 13 18 18 F 1.35099 * 119.97784 * 179.97438 * 17 15 14 19 19 C 1.38410 * 120.04424 * 0.02562 * 17 15 14 20 20 C 1.38168 * 120.04886 * 359.71986 * 19 17 15 21 21 C 1.50701 * 119.99195 * 180.29446 * 20 19 17 22 22 O 1.42906 * 109.46854 * 105.25637 * 21 20 19 23 23 Si 1.86302 * 109.47035 * 345.26095 * 21 20 19 24 24 H 1.48494 * 109.47265 * 59.99879 * 23 21 20 25 25 H 1.48500 * 109.46901 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46851 * 299.99489 * 23 21 20 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.07999 * 120.02905 * 359.97438 * 14 13 12 49 49 H 1.07992 * 119.97512 * 179.97438 * 19 17 15 50 50 H 1.08998 * 109.47650 * 225.25471 * 21 20 19 51 51 H 0.96700 * 114.00145 * 300.00596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6979 -7.6069 4.6629 14 6 2.4938 -7.1875 5.7182 15 6 2.8085 -8.0677 6.7382 16 9 3.5834 -7.6603 7.7672 17 6 2.3285 -9.3681 6.7041 18 9 2.6363 -10.2276 7.6999 19 6 1.5350 -9.7864 5.6500 20 6 1.2154 -8.9072 4.6332 21 6 0.3459 -9.3622 3.4895 22 8 -0.9638 -8.8099 3.6379 23 14 0.2395 -11.2221 3.4920 24 1 -0.3494 -11.6825 4.7751 25 1 -0.6178 -11.6704 2.3654 26 1 1.6004 -11.7960 3.3378 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8683 -6.1748 5.7434 49 1 1.1621 -10.7996 5.6244 50 1 0.7781 -9.0242 2.5476 51 1 -1.4095 -9.0691 4.4559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_14425792_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:29 Heat of formation + Delta-G solvation = -241.070985 kcal Electronic energy + Delta-G solvation = -30630.798332 eV Core-core repulsion = 26096.695987 eV Total energy + Delta-G solvation = -4534.102345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.50886 -49.56567 -41.60179 -39.09122 -38.18671 -37.43311 -36.88027 -33.71283 -32.70507 -30.80473 -29.50153 -29.15106 -27.91085 -27.43344 -27.04801 -26.81055 -24.20357 -23.17720 -22.43905 -20.47716 -19.88807 -19.01117 -18.61925 -17.96714 -17.79507 -17.56966 -17.29033 -17.02396 -16.33945 -16.15432 -16.03424 -16.02488 -15.87391 -15.58519 -15.51490 -15.27629 -14.91956 -14.81089 -14.69058 -14.55188 -14.12869 -14.06681 -13.67225 -13.58560 -13.50028 -13.31546 -13.08319 -13.00301 -12.97672 -12.96151 -12.76064 -12.50565 -12.44161 -12.23914 -12.13739 -11.92021 -11.82923 -11.75534 -11.72770 -11.49571 -11.41028 -10.48942 -10.44317 -10.31479 -10.12736 -9.34030 -0.38748 -0.18037 1.05015 1.25394 1.33287 1.45124 1.67066 1.84652 1.89487 1.98020 2.05436 2.39369 2.63402 3.10162 3.21799 3.36916 3.58460 3.68455 3.69752 3.75858 3.89901 4.03320 4.07251 4.08260 4.10391 4.17461 4.28370 4.37090 4.42571 4.46754 4.49595 4.59604 4.63051 4.65412 4.66160 4.71202 4.76941 4.81675 4.85407 4.90996 4.95588 4.95951 5.06605 5.06815 5.15587 5.29786 5.35699 5.37107 5.38377 5.45955 5.48340 5.53748 6.05081 6.51690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.289 2.711 6 C -0.512 4.512 7 C -0.512 4.512 8 O -0.622 6.622 9 C 0.089 3.911 10 C -0.123 4.123 11 C 0.052 3.948 12 O -0.287 6.287 13 C 0.183 3.817 14 C -0.223 4.223 15 C 0.119 3.881 16 F -0.121 7.121 17 C 0.036 3.964 18 F -0.125 7.125 19 C -0.094 4.094 20 C -0.137 4.137 21 C -0.067 4.067 22 O -0.529 6.529 23 Si 0.941 3.059 24 H -0.249 1.249 25 H -0.246 1.246 26 H -0.246 1.246 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.155 0.845 49 H 0.153 0.847 50 H 0.124 0.876 51 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.152 1.395 -0.873 1.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.420 2.580 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.582 6.582 9 C 0.014 3.986 10 C -0.160 4.160 11 C -0.024 4.024 12 O -0.199 6.199 13 C 0.136 3.864 14 C -0.242 4.242 15 C 0.099 3.901 16 F -0.099 7.099 17 C 0.015 3.985 18 F -0.104 7.104 19 C -0.113 4.113 20 C -0.138 4.138 21 C -0.177 4.177 22 O -0.334 6.334 23 Si 0.763 3.237 24 H -0.173 1.173 25 H -0.170 1.170 26 H -0.169 1.169 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.172 0.828 49 H 0.171 0.829 50 H 0.142 0.858 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.018 0.535 -1.710 1.792 hybrid contribution 0.663 0.887 1.339 1.737 sum 0.680 1.422 -0.371 1.619 Atomic orbital electron populations 1.21515 0.93764 1.02060 1.01819 1.25784 1.00732 1.02629 1.12692 1.21559 1.00764 0.94905 1.02179 1.21516 1.00585 1.00277 0.96774 0.76691 0.62977 0.53303 0.65037 1.27041 1.07082 1.09544 1.17689 1.27041 1.25054 1.04806 1.04450 1.85333 1.79303 1.46073 1.47454 1.21796 0.98087 0.91503 0.87259 1.21509 1.03662 0.93087 0.97745 1.22870 0.98780 0.80618 1.00090 1.86205 1.69900 1.21765 1.42050 1.18371 0.91793 0.89498 0.86781 1.21161 1.05701 1.01906 0.95445 1.17365 0.94126 0.91700 0.86951 1.91577 1.71820 1.90531 1.55984 1.17366 1.04012 0.87254 0.89849 1.91560 1.91680 1.68543 1.58620 1.20893 0.97373 1.00938 0.92095 1.19564 1.03592 0.91606 0.99033 1.24833 0.83892 1.10489 0.98524 1.86595 1.26590 1.75061 1.45114 0.85837 0.82273 0.73917 0.81677 1.17335 1.16987 1.16890 0.92705 0.92761 0.92107 0.92521 0.92472 0.92513 0.92115 0.92766 0.92713 0.91521 0.90666 0.90802 0.90817 0.90659 0.91522 0.92359 0.92372 0.89427 0.89272 0.91248 0.91195 0.82777 0.82948 0.85801 0.77877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.04 7.85 37.16 0.29 0.33 16 2 C -0.37 0.28 0.53 -90.62 -0.05 0.23 16 3 C -0.14 0.14 7.85 37.16 0.29 0.43 16 4 C -0.13 0.05 7.85 37.16 0.29 0.34 16 5 Si 1.29 -2.27 8.45 -169.99 -1.44 -3.71 16 6 C -0.51 0.72 8.50 101.05 0.86 1.58 16 7 C -0.51 0.74 8.50 101.05 0.86 1.60 16 8 O -0.62 0.40 8.56 -35.23 -0.30 0.10 16 9 C 0.09 -0.21 5.12 37.16 0.19 -0.02 16 10 C -0.12 0.24 5.95 -26.73 -0.16 0.08 16 11 C 0.05 -0.13 4.74 37.16 0.18 0.05 16 12 O -0.29 0.03 9.47 -19.58 -0.19 -0.16 16 13 C 0.18 -0.01 6.66 -39.24 -0.26 -0.27 16 14 C -0.22 0.10 9.01 -39.38 -0.35 -0.26 16 15 C 0.12 0.15 7.30 -39.38 -0.29 -0.13 16 16 F -0.12 -0.31 17.18 2.25 0.04 -0.27 16 17 C 0.04 0.05 7.30 -39.36 -0.29 -0.24 16 18 F -0.13 -0.37 17.18 2.25 0.04 -0.33 16 19 C -0.09 0.02 8.63 -39.54 -0.34 -0.32 16 20 C -0.14 0.05 5.27 -104.47 -0.55 -0.50 16 21 C -0.07 0.07 2.37 36.01 0.09 0.15 16 22 O -0.53 0.15 12.88 -35.23 -0.45 -0.31 16 23 Si 0.94 -1.37 25.48 -169.99 -4.33 -5.71 16 24 H -0.25 0.42 6.74 56.52 0.38 0.80 16 25 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 26 H -0.25 0.20 7.11 56.52 0.40 0.60 16 27 H 0.05 -0.05 7.79 -51.93 -0.40 -0.45 16 28 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 29 H 0.06 0.00 7.96 -51.93 -0.41 -0.42 16 30 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 31 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 32 H 0.06 -0.09 7.79 -51.93 -0.40 -0.50 16 33 H 0.06 -0.01 7.96 -51.93 -0.41 -0.42 16 34 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 35 H 0.05 -0.05 7.79 -51.93 -0.40 -0.46 16 36 H 0.07 -0.12 7.48 -51.93 -0.39 -0.51 16 37 H 0.07 -0.12 7.79 -51.92 -0.40 -0.52 16 38 H 0.07 -0.08 7.79 -51.93 -0.40 -0.48 16 39 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 40 H 0.07 -0.12 7.79 -51.93 -0.40 -0.52 16 41 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 42 H 0.06 -0.21 7.21 -51.93 -0.37 -0.59 16 43 H 0.06 -0.22 7.21 -51.93 -0.37 -0.59 16 44 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 45 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.07 -0.27 7.66 -51.93 -0.40 -0.67 16 47 H 0.07 -0.26 7.66 -51.93 -0.40 -0.65 16 48 H 0.15 -0.40 6.30 -52.49 -0.33 -0.73 16 49 H 0.15 -0.26 4.88 -52.49 -0.26 -0.52 16 50 H 0.12 -0.16 7.83 -51.93 -0.41 -0.56 16 51 H 0.37 -1.38 8.70 45.56 0.40 -0.98 16 LS Contribution 414.98 15.07 6.25 6.25 Total: 0.00 -5.20 414.98 -7.54 -12.73 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -7.91 Total: -11.66 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 0.75 Total: 3.06 kcal Atomic # 8 Polarization: 0.58 SS G_CDS: -0.94 Total: -0.37 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.08 Total: -0.61 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: -5.77 Total: -9.41 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -5.20 -7.54 -12.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14425792_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -228.337 kcal (2) G-P(sol) polarization free energy of solvation -5.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds