Wall clock time and date at job start Mon Mar 8 2021 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35950 * 116.99607 * 180.02562 * 12 11 10 14 14 C 1.38666 * 120.01971 * 359.97438 * 13 12 11 15 15 C 1.38362 * 119.94379 * 180.02562 * 14 13 12 16 16 F 1.35104 * 120.00873 * 180.02562 * 15 14 13 17 17 C 1.38653 * 119.98405 * 0.02562 * 15 14 13 18 18 F 1.35099 * 119.97784 * 179.97438 * 17 15 14 19 19 C 1.38410 * 120.04424 * 0.02562 * 17 15 14 20 20 C 1.38168 * 120.04886 * 359.71986 * 19 17 15 21 21 C 1.50701 * 119.99195 * 180.29446 * 20 19 17 22 22 O 1.42906 * 109.46854 * 105.25637 * 21 20 19 23 23 Si 1.86302 * 109.47035 * 345.26095 * 21 20 19 24 24 H 1.48494 * 109.47265 * 59.99879 * 23 21 20 25 25 H 1.48500 * 109.46901 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46851 * 299.99489 * 23 21 20 27 27 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 28 28 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 33 33 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 34 34 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 35 35 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 36 36 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 37 37 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 38 38 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 39 39 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 40 40 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 41 41 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 42 42 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 43 43 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 44 44 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 45 45 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 46 46 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 47 47 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 48 48 H 1.07999 * 120.02905 * 359.97438 * 14 13 12 49 49 H 1.07992 * 119.97512 * 179.97438 * 19 17 15 50 50 H 1.08998 * 109.47650 * 225.25471 * 21 20 19 51 51 H 0.96700 * 114.00145 * 300.00596 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6979 -7.6069 4.6629 14 6 2.4938 -7.1875 5.7182 15 6 2.8085 -8.0677 6.7382 16 9 3.5834 -7.6603 7.7672 17 6 2.3285 -9.3681 6.7041 18 9 2.6363 -10.2276 7.6999 19 6 1.5350 -9.7864 5.6500 20 6 1.2154 -8.9072 4.6332 21 6 0.3459 -9.3622 3.4895 22 8 -0.9638 -8.8099 3.6379 23 14 0.2395 -11.2221 3.4920 24 1 -0.3494 -11.6825 4.7751 25 1 -0.6178 -11.6704 2.3654 26 1 1.6004 -11.7960 3.3378 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7209 -1.2494 36 1 1.8938 -0.5134 3.9323 37 1 1.8934 1.0279 3.0423 38 1 0.4400 0.0002 3.0423 39 1 4.3777 -1.3911 0.6315 40 1 4.3770 0.1503 1.5217 41 1 4.3774 -1.3909 2.4118 42 1 1.6655 -2.7116 3.5652 43 1 3.1185 -3.2254 2.6746 44 1 1.8274 -5.0693 1.6337 45 1 0.3749 -4.5551 2.5246 46 1 3.0051 -5.4633 3.7796 47 1 1.5528 -4.9492 4.6711 48 1 2.8683 -6.1748 5.7434 49 1 1.1621 -10.7996 5.6244 50 1 0.7781 -9.0242 2.5476 51 1 -1.4095 -9.0691 4.4559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_14425792_18527724.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:45:28 Heat of formation + Delta-G solvation = -232.572852 kcal Electronic energy + Delta-G solvation = -30630.429825 eV Core-core repulsion = 26096.695987 eV Total energy + Delta-G solvation = -4533.733839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.61724 -49.68686 -41.54462 -38.99765 -38.04908 -37.38199 -36.81251 -33.56283 -32.67177 -30.77377 -29.35978 -29.04303 -27.82954 -27.36265 -26.88722 -26.76728 -24.12046 -23.13602 -22.30055 -20.40945 -19.85665 -18.98597 -18.65383 -17.91825 -17.71908 -17.47555 -17.26721 -16.99194 -16.22505 -16.12831 -16.12264 -15.95442 -15.79816 -15.55225 -15.47409 -15.16047 -14.84676 -14.75941 -14.68463 -14.52420 -14.01459 -13.94829 -13.60551 -13.45960 -13.35791 -13.16379 -13.00811 -12.94171 -12.93407 -12.85691 -12.69875 -12.37898 -12.35834 -12.16840 -12.05109 -11.80480 -11.75192 -11.68268 -11.62968 -11.31884 -11.27147 -10.40861 -10.29346 -10.28618 -10.03997 -9.34166 -0.37311 -0.18124 1.15164 1.42823 1.44588 1.54483 1.80295 1.93355 2.01651 2.07541 2.14941 2.52577 2.63981 3.07963 3.26067 3.46717 3.70127 3.74773 3.92586 3.94282 4.06269 4.13664 4.14057 4.20216 4.38198 4.40100 4.43990 4.47768 4.48377 4.51429 4.53899 4.75198 4.76098 4.77651 4.80080 4.81246 4.83785 4.84220 4.91230 5.01512 5.09756 5.10397 5.10571 5.11209 5.23576 5.36439 5.38734 5.42491 5.46331 5.57890 5.63247 5.66517 6.15403 6.75400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.320 2.680 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.078 3.922 10 C -0.119 4.119 11 C 0.045 3.955 12 O -0.299 6.299 13 C 0.181 3.819 14 C -0.214 4.214 15 C 0.105 3.895 16 F -0.132 7.132 17 C 0.017 3.983 18 F -0.139 7.139 19 C -0.090 4.090 20 C -0.137 4.137 21 C -0.066 4.066 22 O -0.545 6.545 23 Si 0.972 3.028 24 H -0.242 1.242 25 H -0.269 1.269 26 H -0.254 1.254 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.177 0.823 49 H 0.166 0.834 50 H 0.124 0.876 51 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 1.768 -0.402 1.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.450 2.550 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.600 6.600 9 C 0.003 3.997 10 C -0.157 4.157 11 C -0.030 4.030 12 O -0.212 6.212 13 C 0.133 3.867 14 C -0.233 4.233 15 C 0.085 3.915 16 F -0.110 7.110 17 C -0.003 4.003 18 F -0.118 7.118 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.176 4.176 22 O -0.352 6.352 23 Si 0.795 3.205 24 H -0.166 1.166 25 H -0.194 1.194 26 H -0.178 1.178 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.194 0.806 49 H 0.183 0.817 50 H 0.142 0.858 51 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.372 0.922 -1.234 1.585 hybrid contribution 0.507 0.801 1.121 1.468 sum 0.880 1.723 -0.113 1.938 Atomic orbital electron populations 1.21542 0.94367 1.01747 1.01781 1.25974 1.00340 1.03056 1.13414 1.21603 1.01286 0.94746 1.02152 1.21543 1.01025 1.00016 0.96842 0.76110 0.62480 0.52587 0.63839 1.27110 1.06842 1.09855 1.18230 1.27101 1.25195 1.05020 1.04671 1.85324 1.79700 1.46656 1.48291 1.22028 0.99244 0.91068 0.87374 1.21460 1.02874 0.93614 0.97766 1.23069 0.99922 0.79570 1.00404 1.86197 1.70191 1.22719 1.42071 1.18472 0.91699 0.89659 0.86864 1.21317 1.04980 1.02565 0.94485 1.17556 0.94628 0.92052 0.87304 1.91544 1.72256 1.90644 1.56606 1.17603 1.05084 0.87401 0.90219 1.91518 1.91946 1.68997 1.59293 1.20986 0.96805 1.01539 0.91486 1.19687 1.03419 0.91680 0.99019 1.24873 0.83611 1.10789 0.98299 1.86559 1.26888 1.75421 1.46285 0.85397 0.81111 0.73062 0.80928 1.16595 1.19362 1.17784 0.92093 0.93480 0.92540 0.91777 0.93291 0.91805 0.92519 0.93497 0.92051 0.90751 0.90492 0.91252 0.91192 0.90491 0.90724 0.90797 0.90646 0.90286 0.90525 0.89420 0.89670 0.80618 0.81711 0.85794 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 7.85 71.98 0.56 0.55 16 2 C -0.39 0.47 0.53 -10.79 -0.01 0.46 16 3 C -0.14 0.27 7.85 71.98 0.56 0.83 16 4 C -0.14 0.01 7.85 71.98 0.56 0.57 16 5 Si 1.32 -5.36 8.45 68.60 0.58 -4.78 16 6 C -0.52 1.92 8.50 113.37 0.96 2.88 16 7 C -0.52 2.01 8.50 113.37 0.96 2.98 16 8 O -0.64 1.08 8.56 -148.98 -1.28 -0.19 16 9 C 0.08 -0.45 5.12 71.98 0.37 -0.08 16 10 C -0.12 0.52 5.95 30.59 0.18 0.70 16 11 C 0.04 -0.28 4.74 71.98 0.34 0.06 16 12 O -0.30 0.26 9.47 -92.98 -0.88 -0.62 16 13 C 0.18 -0.13 6.66 22.49 0.15 0.02 16 14 C -0.21 0.35 9.01 22.40 0.20 0.55 16 15 C 0.10 0.28 7.30 22.40 0.16 0.45 16 16 F -0.13 -0.74 17.18 44.97 0.77 0.04 16 17 C 0.02 0.06 7.30 22.41 0.16 0.22 16 18 F -0.14 -0.94 17.18 44.97 0.77 -0.17 16 19 C -0.09 0.05 8.63 22.29 0.19 0.24 16 20 C -0.14 0.14 5.27 -19.76 -0.10 0.03 16 21 C -0.07 0.15 2.37 71.24 0.17 0.31 16 22 O -0.54 0.42 12.88 -148.98 -1.92 -1.50 16 23 Si 0.97 -2.95 25.48 68.60 1.75 -1.21 16 24 H -0.24 1.03 6.74 99.48 0.67 1.70 16 25 H -0.27 -0.17 7.11 99.48 0.71 0.53 16 26 H -0.25 0.43 7.11 99.48 0.71 1.13 16 27 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 28 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.04 7.96 -2.38 -0.02 0.02 16 30 H 0.06 -0.23 7.79 -2.39 -0.02 -0.24 16 31 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 34 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 36 H 0.07 -0.39 7.48 -2.39 -0.02 -0.40 16 37 H 0.08 -0.30 7.79 -2.38 -0.02 -0.32 16 38 H 0.07 -0.18 7.79 -2.39 -0.02 -0.20 16 39 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.08 -0.32 7.79 -2.39 -0.02 -0.33 16 41 H 0.07 -0.40 7.48 -2.38 -0.02 -0.42 16 42 H 0.07 -0.66 7.21 -2.39 -0.02 -0.68 16 43 H 0.08 -0.70 7.21 -2.39 -0.02 -0.72 16 44 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.09 -0.86 7.66 -2.39 -0.02 -0.88 16 47 H 0.09 -0.78 7.66 -2.39 -0.02 -0.80 16 48 H 0.18 -1.21 6.30 -2.91 -0.02 -1.22 16 49 H 0.17 -0.63 4.88 -2.91 -0.01 -0.65 16 50 H 0.12 -0.30 7.83 -2.39 -0.02 -0.32 16 51 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 Total: 0.00 -12.37 414.98 6.24 -6.13 By element: Atomic # 1 Polarization: -9.49 SS G_CDS: 1.00 Total: -8.49 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.44 Total: 10.80 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: -4.07 Total: -2.32 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 1.55 Total: -0.13 kcal Atomic # 14 Polarization: -8.31 SS G_CDS: 2.33 Total: -5.98 kcal Total: -12.37 6.24 -6.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_14425792_18527724.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.440 kcal (2) G-P(sol) polarization free energy of solvation -12.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds