Wall clock time and date at job start Mon Mar 8 2021 17:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47357 * 2 1 4 4 C 1.53000 * 109.47641 * 239.99771 * 2 1 3 5 5 Si 1.86300 * 109.46934 * 119.99571 * 2 1 3 6 6 C 1.86300 * 109.47317 * 300.00076 * 5 2 1 7 7 C 1.86305 * 109.47305 * 180.02562 * 5 2 1 8 8 O 1.63102 * 109.47009 * 60.00163 * 5 2 1 9 9 C 1.42905 * 113.99852 * 179.97438 * 8 5 2 10 10 C 1.53004 * 109.46785 * 180.02562 * 9 8 5 11 11 O 1.42897 * 109.47198 * 65.00432 * 10 9 8 12 12 C 1.35975 * 117.00047 * 180.02562 * 11 10 9 13 13 C 1.38663 * 119.98747 * 359.97438 * 12 11 10 14 14 C 1.38259 * 120.08778 * 179.97438 * 13 12 11 15 15 C 1.38486 * 120.09737 * 0.02562 * 14 13 12 16 16 O 1.36596 * 131.47069 * 179.97438 * 15 14 13 17 17 C 1.43993 * 105.47537 * 162.71538 * 16 15 14 18 18 O 1.43983 * 103.74037 * 27.14683 * 17 16 15 19 19 C 1.36507 * 105.50015 * 332.84079 * 18 17 16 20 20 C 1.38492 * 131.47658 * 197.63816 * 19 18 17 21 21 C 1.50702 * 120.00547 * 359.93618 * 20 19 18 22 22 O 1.42892 * 109.47267 * 303.78120 * 21 20 19 23 23 Si 1.86303 * 109.46873 * 63.77848 * 21 20 19 24 24 H 1.48502 * 109.47263 * 54.54913 * 23 21 20 25 25 H 1.48505 * 109.46908 * 174.54584 * 23 21 20 26 26 H 1.48497 * 109.47264 * 294.54475 * 23 21 20 27 27 H 1.09000 * 109.47503 * 300.00511 * 1 2 3 28 28 H 1.09003 * 109.46919 * 60.00083 * 1 2 3 29 29 H 1.08999 * 109.47362 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46526 * 299.99773 * 3 2 1 32 32 H 1.09000 * 109.47231 * 59.99322 * 3 2 1 33 33 H 1.09000 * 109.46940 * 300.00118 * 4 2 1 34 34 H 1.09001 * 109.47159 * 59.99666 * 4 2 1 35 35 H 1.08998 * 109.47746 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47043 * 179.97438 * 6 5 2 37 37 H 1.09000 * 109.47202 * 300.00077 * 6 5 2 38 38 H 1.09006 * 109.46675 * 59.99916 * 6 5 2 39 39 H 1.09003 * 109.46867 * 300.00345 * 7 5 2 40 40 H 1.09000 * 109.46970 * 60.00073 * 7 5 2 41 41 H 1.08993 * 109.47184 * 180.02562 * 7 5 2 42 42 H 1.08997 * 109.47010 * 60.00481 * 9 8 5 43 43 H 1.08993 * 109.47514 * 300.00191 * 9 8 5 44 44 H 1.09000 * 109.46730 * 185.00634 * 10 9 8 45 45 H 1.08999 * 109.47023 * 305.00103 * 10 9 8 46 46 H 1.08007 * 119.95393 * 0.02562 * 13 12 11 47 47 H 1.07995 * 119.95107 * 180.02562 * 14 13 12 48 48 H 1.09002 * 110.56779 * 268.58563 * 17 16 15 49 49 H 1.08999 * 110.57255 * 145.70824 * 17 16 15 50 50 H 1.09001 * 109.47389 * 183.77833 * 21 20 19 51 51 H 0.96698 * 114.00169 * 299.99816 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1509 -0.8781 1.5212 6 6 1.5299 0.0002 3.0423 7 6 4.0140 -0.8775 1.5217 8 8 1.6072 -2.4159 1.5213 9 6 2.0293 -3.1815 2.6516 10 6 1.4644 -4.5996 2.5467 11 8 2.0329 -5.2561 1.4119 12 6 1.6333 -6.5337 1.1734 13 6 0.7138 -7.1408 2.0153 14 6 0.3056 -8.4396 1.7744 15 6 0.8141 -9.1380 0.6921 16 8 0.5795 -10.4065 0.2429 17 6 1.0560 -10.4273 -1.1157 18 8 2.0820 -9.4173 -1.1338 19 6 1.7380 -8.5302 -0.1549 20 6 2.1405 -7.2269 0.0845 21 6 3.1348 -6.5644 -0.8339 22 8 4.3230 -7.3553 -0.8998 23 14 2.3977 -6.4079 -2.5378 24 1 1.0956 -5.6993 -2.4508 25 1 3.3227 -5.6386 -3.4084 26 1 2.1876 -7.7610 -3.1124 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6768 -1.7489 -1.2491 34 1 1.6768 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2490 36 1 1.8929 -0.5139 3.9323 37 1 1.8932 1.0278 3.0423 38 1 0.4398 0.0001 3.0422 39 1 4.3777 -1.3911 0.6317 40 1 4.3769 0.1503 1.5219 41 1 4.3772 -1.3916 2.4115 42 1 1.6651 -2.7117 3.5652 43 1 3.1181 -3.2254 2.6748 44 1 1.7114 -5.1568 3.4504 45 1 0.3813 -4.5518 2.4340 46 1 0.3154 -6.5980 2.8598 47 1 -0.4110 -8.9102 2.4313 48 1 0.2533 -10.1702 -1.8070 49 1 1.4751 -11.4034 -1.3597 50 1 3.3787 -5.5733 -0.4512 51 1 4.7610 -7.4789 -0.0466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096578_10264010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:22:00 Heat of formation + Delta-G solvation = -198.535228 kcal Electronic energy + Delta-G solvation = -31230.317317 eV Core-core repulsion = 27026.914506 eV Total energy + Delta-G solvation = -4203.402811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.171 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23289 -40.92609 -38.53021 -37.76252 -37.23250 -36.82934 -36.78580 -32.58823 -30.97648 -29.90274 -29.25804 -29.02451 -27.81695 -27.34973 -26.84740 -26.69504 -24.67772 -23.15144 -22.59825 -20.39859 -19.73426 -19.01277 -18.80647 -18.11684 -17.86377 -17.57581 -16.95766 -16.48057 -16.26054 -16.18650 -15.87815 -15.62920 -15.48682 -15.21457 -14.89093 -14.82784 -14.69067 -14.60849 -14.06843 -13.95656 -13.93793 -13.73085 -13.54419 -13.45798 -13.33102 -13.13754 -13.02048 -12.93258 -12.89878 -12.54532 -12.41330 -12.35511 -12.30547 -12.14868 -11.79170 -11.67139 -11.50091 -11.38248 -11.24751 -11.20934 -11.03941 -10.26799 -10.02426 -9.66319 -8.82425 -0.03656 0.11651 1.15117 1.41918 1.45107 1.56619 1.60302 1.82170 1.92799 2.17368 2.19490 2.46687 2.51559 2.65139 3.28541 3.68648 3.75544 3.83107 3.88358 4.01503 4.10567 4.14015 4.14799 4.17768 4.21965 4.27836 4.38862 4.42412 4.48582 4.49627 4.69355 4.78478 4.81430 4.82323 4.83877 4.84424 4.85645 4.86176 4.95703 5.02174 5.05950 5.11091 5.11501 5.12808 5.20934 5.23119 5.36653 5.43212 5.46250 5.53934 5.63881 5.69010 6.00371 6.34064 6.67434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.387 4.387 3 C -0.140 4.140 4 C -0.139 4.139 5 Si 1.320 2.680 6 C -0.515 4.515 7 C -0.520 4.520 8 O -0.637 6.637 9 C 0.072 3.928 10 C 0.043 3.957 11 O -0.308 6.308 12 C 0.156 3.844 13 C -0.195 4.195 14 C -0.053 4.053 15 C -0.031 4.031 16 O -0.322 6.322 17 C 0.200 3.800 18 O -0.312 6.312 19 C 0.073 3.927 20 C -0.161 4.161 21 C -0.070 4.070 22 O -0.549 6.549 23 Si 1.006 2.994 24 H -0.250 1.250 25 H -0.257 1.257 26 H -0.261 1.261 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.178 0.822 47 H 0.161 0.839 48 H 0.099 0.901 49 H 0.157 0.843 50 H 0.096 0.904 51 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 2.360 5.743 6.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.429 4.429 3 C -0.197 4.197 4 C -0.196 4.196 5 Si 1.450 2.550 6 C -0.617 4.617 7 C -0.621 4.621 8 O -0.596 6.596 9 C -0.003 4.003 10 C -0.031 4.031 11 O -0.222 6.222 12 C 0.110 3.890 13 C -0.213 4.213 14 C -0.071 4.071 15 C -0.075 4.075 16 O -0.239 6.239 17 C 0.090 3.910 18 O -0.228 6.228 19 C 0.027 3.973 20 C -0.162 4.162 21 C -0.179 4.179 22 O -0.356 6.356 23 Si 0.826 3.174 24 H -0.173 1.173 25 H -0.181 1.181 26 H -0.185 1.185 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.195 0.805 47 H 0.179 0.821 48 H 0.116 0.884 49 H 0.175 0.825 50 H 0.114 0.886 51 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.220 2.159 3.971 5.036 hybrid contribution 0.446 0.073 0.780 0.901 sum -1.774 2.232 4.751 5.541 Atomic orbital electron populations 1.21533 0.94238 1.01737 1.01805 1.25999 1.00438 1.03006 1.13409 1.21597 1.01184 0.94789 1.02160 1.21556 1.00990 1.00018 0.97050 0.76109 0.62171 0.52792 0.63969 1.27057 1.06991 1.09741 1.17932 1.27143 1.25723 1.04776 1.04497 1.85410 1.79332 1.46538 1.48359 1.22419 1.00088 0.89518 0.88265 1.23448 0.99850 0.92174 0.87617 1.86109 1.64886 1.22417 1.48753 1.18227 0.93624 0.84886 0.92293 1.21345 1.01302 0.95596 1.03055 1.20221 0.99071 0.92915 0.94928 1.19981 1.01831 0.85218 1.00424 1.87351 1.80998 1.26486 1.29074 1.26089 0.87941 0.94454 0.82553 1.87467 1.47499 1.34817 1.53019 1.19327 0.95772 0.91348 0.90824 1.18495 1.06567 0.91047 1.00133 1.24859 0.86916 0.96329 1.09757 1.86686 1.38566 1.73809 1.36515 0.84572 0.78847 0.80224 0.73711 1.17320 1.18117 1.18515 0.91807 0.93691 0.92530 0.91970 0.93411 0.91619 0.92655 0.93548 0.92208 0.90446 0.90599 0.90925 0.91594 0.90646 0.90802 0.87543 0.90738 0.87652 0.89644 0.80512 0.82127 0.88365 0.82537 0.88628 0.77292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.58 16 2 C -0.39 0.33 0.53 -10.79 -0.01 0.32 16 3 C -0.14 0.22 7.85 71.98 0.56 0.78 16 4 C -0.14 -0.18 7.85 71.98 0.56 0.38 16 5 Si 1.32 -5.55 8.45 68.60 0.58 -4.97 16 6 C -0.52 2.62 8.50 113.37 0.96 3.59 16 7 C -0.52 1.50 8.50 113.37 0.96 2.47 16 8 O -0.64 1.41 8.52 -144.35 -1.23 0.18 16 9 C 0.07 -0.50 5.51 71.98 0.40 -0.11 16 10 C 0.04 -0.29 5.12 71.98 0.37 0.08 16 11 O -0.31 -0.12 8.87 -88.63 -0.79 -0.90 16 12 C 0.16 0.34 6.66 22.48 0.15 0.49 16 13 C -0.19 0.34 9.03 22.38 0.20 0.55 16 14 C -0.05 -0.04 10.05 22.33 0.22 0.18 16 15 C -0.03 -0.20 7.15 22.58 0.16 -0.04 16 16 O -0.32 -2.20 11.41 -77.19 -0.88 -3.08 16 17 C 0.20 0.53 8.89 113.37 1.01 1.54 16 18 O -0.31 -2.87 10.19 -76.13 -0.78 -3.65 16 19 C 0.07 0.60 5.95 22.59 0.13 0.73 16 20 C -0.16 -1.00 4.48 -19.69 -0.09 -1.08 16 21 C -0.07 -0.42 2.71 71.24 0.19 -0.23 16 22 O -0.55 -3.81 12.48 -148.98 -1.86 -5.67 16 23 Si 1.01 7.79 27.33 68.60 1.87 9.66 16 24 H -0.25 -1.82 7.11 99.48 0.71 -1.11 16 25 H -0.26 -2.14 7.11 99.48 0.71 -1.43 16 26 H -0.26 -2.74 6.74 99.48 0.67 -2.07 16 27 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 28 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 30 H 0.06 -0.17 7.79 -2.39 -0.02 -0.19 16 31 H 0.05 0.00 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 33 H 0.05 0.13 7.97 -2.39 -0.02 0.11 16 34 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.06 0.00 7.79 -2.39 -0.02 -0.01 16 36 H 0.08 -0.55 7.48 -2.39 -0.02 -0.57 16 37 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 38 H 0.07 -0.33 7.79 -2.38 -0.02 -0.35 16 39 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 40 H 0.07 -0.24 7.79 -2.39 -0.02 -0.26 16 41 H 0.07 -0.33 7.48 -2.39 -0.02 -0.34 16 42 H 0.11 -1.34 7.21 -2.39 -0.02 -1.36 16 43 H 0.07 -0.62 7.21 -2.39 -0.02 -0.63 16 44 H 0.11 -1.27 7.66 -2.39 -0.02 -1.29 16 45 H 0.09 -0.68 7.66 -2.39 -0.02 -0.70 16 46 H 0.18 -1.59 6.28 -2.91 -0.02 -1.61 16 47 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 48 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.10 0.35 6.82 -2.39 -0.02 0.33 16 51 H 0.38 0.23 9.08 -74.06 -0.67 -0.44 16 Total: 0.00 -16.46 408.71 4.25 -12.21 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: 0.96 Total: -14.02 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.37 Total: 10.25 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -5.53 Total: -13.12 kcal Atomic # 14 Polarization: 2.23 SS G_CDS: 2.45 Total: 4.69 kcal Total: -16.46 4.25 -12.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_10264010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.323 kcal (2) G-P(sol) polarization free energy of solvation -16.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds