Wall clock time and date at job start Mon Mar 8 2021 17:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86306 * 109.47066 * 2 1 4 4 C 1.50703 * 109.46865 * 240.00228 * 2 1 3 5 5 C 1.38658 * 120.00779 * 245.68529 * 4 2 1 6 6 O 1.35982 * 119.97887 * 0.02562 * 5 4 2 7 7 C 1.42904 * 116.99205 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46641 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46536 * 179.97438 * 8 7 6 10 10 O 1.42966 * 109.47097 * 299.99903 * 8 7 6 11 11 C 1.43086 * 113.76807 * 178.79698 * 10 8 7 12 12 C 1.53256 * 108.94478 * 302.02786 * 11 10 8 13 13 H 1.09001 * 109.57770 * 294.71835 * 12 11 10 14 14 N 1.46503 * 109.68135 * 174.39779 * 12 11 10 15 15 C 1.34525 * 124.45774 * 300.26834 * 14 12 11 16 16 O 1.21443 * 125.71508 * 0.02562 * 15 14 12 17 17 C 1.47824 * 108.57850 * 179.90921 * 15 14 12 18 18 C 1.40951 * 105.87617 * 0.34916 * 17 15 14 19 19 C 1.38569 * 119.81885 * 179.82928 * 18 17 15 20 20 C 1.38613 * 119.71673 * 359.93693 * 19 18 17 21 21 C 1.38227 * 120.46136 * 0.06445 * 20 19 18 22 22 C 1.38562 * 134.29902 * 180.10912 * 17 15 14 23 23 C 1.34523 * 124.46016 * 120.58060 * 14 12 11 24 24 O 1.21450 * 125.71219 * 359.97438 * 23 14 12 25 25 C 1.53265 * 108.84462 * 54.52462 * 12 11 10 26 26 O 1.42965 * 109.47122 * 59.99790 * 8 7 6 27 27 C 1.38691 * 120.02692 * 180.02562 * 5 4 2 28 28 C 1.38210 * 120.08806 * 359.97438 * 27 5 4 29 29 C 1.38533 * 120.10033 * 359.97438 * 28 27 5 30 30 C 1.38536 * 120.00481 * 65.66234 * 4 2 1 31 31 O 1.36507 * 131.47384 * 359.96653 * 30 4 2 32 32 C 1.43977 * 105.50208 * 197.28459 * 31 30 4 33 33 O 1.36601 * 131.46329 * 180.02562 * 29 28 27 34 34 H 0.96699 * 113.99849 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47636 * 120.00541 * 2 1 3 36 36 H 1.48501 * 109.99847 * 54.87497 * 3 2 1 37 37 H 1.48499 * 109.99684 * 176.19647 * 3 2 1 38 38 H 1.09003 * 109.46994 * 299.99794 * 7 6 5 39 39 H 1.09000 * 109.47070 * 59.99914 * 7 6 5 40 40 H 1.09003 * 109.56320 * 182.19025 * 11 10 8 41 41 H 1.09000 * 109.64841 * 61.92149 * 11 10 8 42 42 H 1.07989 * 120.13995 * 179.97438 * 19 18 17 43 43 H 1.07996 * 119.77144 * 180.02562 * 20 19 18 44 44 H 1.08001 * 119.76900 * 179.97438 * 21 20 19 45 45 H 1.08002 * 120.14291 * 0.28982 * 22 17 15 46 46 H 1.08997 * 109.55552 * 185.64056 * 25 12 11 47 47 H 1.09000 * 109.55567 * 65.31661 * 25 12 11 48 48 H 1.08008 * 119.95494 * 179.97438 * 27 5 4 49 49 H 1.08002 * 119.95134 * 180.02562 * 28 27 5 50 50 H 1.09004 * 110.56982 * 91.41755 * 32 31 30 51 51 H 1.08994 * 110.57580 * 214.14052 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.6285 -1.9025 -1.1070 6 8 2.8585 -2.4307 0.1248 7 6 3.5837 -3.6609 0.1779 8 6 3.7439 -4.0958 1.6361 9 1 4.2966 -5.0343 1.6766 10 8 4.4587 -3.0896 2.3577 11 6 4.6372 -3.3918 3.7448 12 6 3.2623 -3.5933 4.3911 13 1 2.7079 -2.6550 4.3703 14 7 3.4290 -4.0341 5.7783 15 6 4.0686 -5.1583 6.1481 16 8 4.5917 -5.9562 5.3966 17 6 4.0307 -5.2586 7.6224 18 6 3.3220 -4.1246 8.0679 19 6 3.1123 -3.9319 9.4240 20 6 3.6004 -4.8574 10.3331 21 6 4.2955 -5.9695 9.8961 22 6 4.5135 -6.1750 8.5428 23 6 2.9575 -3.3710 6.8496 24 8 2.3361 -2.3280 6.8207 25 6 2.4958 -4.6603 3.6018 26 8 2.4533 -4.2774 2.2238 27 6 3.0914 -2.5563 -2.2391 28 6 2.8583 -2.0215 -3.4921 29 6 2.1613 -0.8313 -3.6208 30 6 1.6960 -0.1727 -2.4854 31 8 1.0481 0.9639 -2.8750 32 6 0.7670 0.7857 -4.2758 33 8 1.8048 -0.1064 -4.7223 34 1 -0.3933 -0.8834 -0.0004 35 1 1.7924 -0.5139 0.8899 36 1 1.4623 2.5030 1.1413 37 1 3.5320 1.7712 0.0926 38 1 3.0388 -4.4279 -0.3726 39 1 4.5678 -3.5222 -0.2697 40 1 5.1533 -2.5661 4.2348 41 1 5.2263 -4.3031 3.8485 42 1 2.5704 -3.0647 9.7710 43 1 3.4371 -4.7083 11.3902 44 1 4.6712 -6.6833 10.6143 45 1 5.0575 -7.0455 8.2072 46 1 1.4803 -4.7416 3.9895 47 1 3.0030 -5.6202 3.6985 48 1 3.6348 -3.4847 -2.1415 49 1 3.2194 -2.5328 -4.3723 50 1 -0.2139 0.3310 -4.4148 51 1 0.8243 1.7384 -4.8022 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096578_13594088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 17:40:03 Heat of formation + Delta-G solvation = -170.495232 kcal Electronic energy + Delta-G solvation = -44230.004860 eV Core-core repulsion = 38416.280685 eV Total energy + Delta-G solvation = -5813.724175 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.133 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -43.75938 -43.20579 -41.51417 -40.73735 -40.00422 -39.50935 -38.27749 -37.43971 -37.23391 -37.13180 -36.90846 -34.59385 -32.65605 -32.20172 -31.66248 -30.40780 -29.58414 -27.55262 -26.88210 -26.63054 -26.40043 -25.57162 -24.61378 -23.53692 -23.32439 -22.80635 -22.34492 -21.06568 -19.87772 -19.18287 -19.03944 -19.02572 -18.83585 -18.71591 -18.07150 -17.89690 -17.70772 -17.62579 -17.09289 -17.07384 -16.71051 -16.58144 -16.31548 -16.20692 -16.07401 -15.91970 -15.79847 -15.53051 -15.48381 -15.38293 -15.10670 -15.03412 -14.83192 -14.73600 -14.39131 -14.21862 -14.09772 -13.89032 -13.84728 -13.61133 -13.47658 -13.32048 -12.93370 -12.73431 -12.71636 -12.53630 -12.43752 -12.37201 -12.26892 -11.75039 -11.68289 -11.44115 -11.28252 -11.21174 -11.01223 -10.91378 -10.29712 -10.28480 -9.73455 -8.84462 -4.97959 -1.16010 -0.09919 -0.05343 0.08729 0.81998 0.84190 1.22642 1.45309 1.56385 1.57331 1.78831 2.10330 2.15466 2.25222 2.39875 2.43777 2.53431 2.65430 3.01969 3.09898 3.16574 3.25877 3.42946 3.49840 3.61821 3.66686 3.72721 3.77464 3.86654 3.89477 3.93798 3.99271 4.00680 4.04936 4.07791 4.11218 4.13809 4.14801 4.18525 4.26565 4.29683 4.36883 4.41126 4.42184 4.48791 4.75634 4.76969 4.83787 4.89742 5.03250 5.08448 5.14800 5.16835 5.21473 5.29441 5.38349 5.61895 5.69090 5.86867 5.99680 6.21252 6.29087 6.55450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.063 4.063 3 Si 0.791 3.209 4 C -0.158 4.158 5 C 0.145 3.855 6 O -0.310 6.310 7 C 0.068 3.932 8 C 0.235 3.765 9 H 0.111 0.889 10 O -0.387 6.387 11 C 0.052 3.948 12 C 0.075 3.925 13 H 0.111 0.889 14 N -0.570 5.570 15 C 0.577 3.423 16 O -0.478 6.478 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.045 4.045 20 C -0.083 4.083 21 C -0.083 4.083 22 C -0.041 4.041 23 C 0.574 3.426 24 O -0.492 6.492 25 C 0.053 3.947 26 O -0.384 6.384 27 C -0.195 4.195 28 C -0.052 4.052 29 C -0.022 4.022 30 C 0.085 3.915 31 O -0.303 6.303 32 C 0.203 3.797 33 O -0.321 6.321 34 H 0.375 0.625 35 H 0.074 0.926 36 H -0.282 1.282 37 H -0.273 1.273 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.178 0.822 45 H 0.158 0.842 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.176 0.824 49 H 0.164 0.836 50 H 0.100 0.900 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -7.655 3.814 8.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.172 4.172 3 Si 0.693 3.307 4 C -0.160 4.160 5 C 0.099 3.901 6 O -0.223 6.223 7 C -0.007 4.007 8 C 0.141 3.859 9 H 0.128 0.872 10 O -0.306 6.306 11 C -0.025 4.025 12 C -0.028 4.028 13 H 0.129 0.871 14 N -0.314 5.314 15 C 0.369 3.631 16 O -0.351 6.351 17 C -0.162 4.162 18 C -0.164 4.164 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.060 4.060 23 C 0.365 3.635 24 O -0.364 6.364 25 C -0.024 4.024 26 O -0.303 6.303 27 C -0.214 4.214 28 C -0.070 4.070 29 C -0.066 4.066 30 C 0.039 3.961 31 O -0.219 6.219 32 C 0.093 3.907 33 O -0.238 6.238 34 H 0.224 0.776 35 H 0.091 0.909 36 H -0.209 1.209 37 H -0.199 1.199 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.195 0.805 45 H 0.176 0.824 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.193 0.807 49 H 0.182 0.818 50 H 0.118 0.882 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.867 -5.766 3.576 7.366 hybrid contribution -0.222 -1.377 0.523 1.490 sum 2.645 -7.144 4.099 8.650 Atomic orbital electron populations 1.86698 1.17047 1.34122 1.97191 1.25033 0.84663 1.12540 0.94941 0.92224 0.76355 0.75675 0.86449 1.18355 1.08035 0.96659 0.92944 1.18336 0.95000 0.91771 0.85011 1.86166 1.71720 1.39121 1.25336 1.23275 0.98856 0.85440 0.93080 1.24034 0.80867 0.91546 0.89494 0.87219 1.88236 1.74781 1.47522 1.20100 1.22981 0.94120 1.03854 0.81551 1.22574 1.00239 1.01180 0.78777 0.87118 1.46472 1.52653 1.24307 1.07990 1.18714 0.75759 0.79259 0.89413 1.90786 1.41582 1.42405 1.60329 1.20452 1.04665 0.98888 0.92229 1.20421 1.04384 0.97058 0.94534 1.21160 0.96110 0.99947 0.89181 1.21959 0.94174 0.92258 1.01726 1.21983 0.95355 0.97791 0.94928 1.21178 0.95296 0.97281 0.92198 1.18845 0.76628 0.83146 0.84831 1.90831 1.36883 1.21768 1.86966 1.22990 1.02579 0.95916 0.80919 1.88229 1.29809 1.88841 1.23453 1.21288 1.06503 1.03647 0.89919 1.20206 0.96820 0.90821 0.99153 1.19914 1.05607 0.96560 0.84519 1.19148 0.96701 0.86862 0.93347 1.87340 1.73429 1.34026 1.27064 1.26157 0.91416 0.96525 0.76598 1.87361 1.55060 1.50449 1.30903 0.77642 0.90888 1.20854 1.19866 0.86539 0.86874 0.87313 0.90270 0.83072 0.80647 0.80471 0.82429 0.87095 0.90329 0.80725 0.81837 0.88203 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -5.19 12.62 -148.98 -1.88 -7.07 16 2 C -0.06 -0.62 2.72 71.24 0.19 -0.43 16 3 Si 0.79 8.02 31.11 68.60 2.13 10.15 16 4 C -0.16 -1.27 4.62 -19.69 -0.09 -1.36 16 5 C 0.14 0.73 6.66 22.48 0.15 0.88 16 6 O -0.31 -1.76 8.69 -73.76 -0.64 -2.40 16 7 C 0.07 -0.12 4.83 71.98 0.35 0.23 16 8 C 0.24 0.31 3.59 71.98 0.26 0.57 16 9 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 10 O -0.39 -2.19 10.43 -121.89 -1.27 -3.46 16 11 C 0.05 0.19 6.33 72.07 0.46 0.65 16 12 C 0.07 0.36 3.07 45.17 0.14 0.50 16 13 H 0.11 0.90 7.59 -2.39 -0.02 0.89 16 14 N -0.57 -2.54 2.53 -739.54 -1.87 -4.42 16 15 C 0.58 2.02 7.35 86.82 0.64 2.66 16 16 O -0.48 -2.93 15.17 -3.54 -0.05 -2.99 16 17 C -0.16 0.02 6.41 -20.00 -0.13 -0.11 16 18 C -0.16 -0.17 6.41 -20.00 -0.13 -0.29 16 19 C -0.05 0.20 10.09 22.44 0.23 0.42 16 20 C -0.08 0.82 10.04 22.36 0.22 1.05 16 21 C -0.08 0.87 10.03 22.36 0.22 1.09 16 22 C -0.04 0.24 10.09 22.44 0.23 0.47 16 23 C 0.57 3.64 8.02 86.82 0.70 4.34 16 24 O -0.49 -6.15 17.44 -3.56 -0.06 -6.21 16 25 C 0.05 0.17 6.32 72.07 0.46 0.63 16 26 O -0.38 -1.87 10.43 -121.89 -1.27 -3.14 16 27 C -0.20 0.07 9.03 22.37 0.20 0.27 16 28 C -0.05 -0.05 10.05 22.33 0.22 0.18 16 29 C -0.02 -0.12 7.15 22.59 0.16 0.04 16 30 C 0.08 0.62 6.02 22.59 0.14 0.76 16 31 O -0.30 -1.71 9.71 -76.14 -0.74 -2.45 16 32 C 0.20 -0.09 8.89 113.37 1.01 0.92 16 33 O -0.32 -1.56 11.41 -77.24 -0.88 -2.44 16 34 H 0.37 1.47 9.07 -74.06 -0.67 0.79 16 35 H 0.07 0.86 6.83 -2.39 -0.02 0.85 16 36 H -0.28 -4.21 7.11 99.48 0.71 -3.50 16 37 H -0.27 -3.61 7.11 99.48 0.71 -2.91 16 38 H 0.12 -0.79 7.66 -2.39 -0.02 -0.81 16 39 H 0.11 -0.70 7.66 -2.39 -0.02 -0.71 16 40 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.08 0.22 6.68 -2.39 -0.02 0.21 16 42 H 0.15 -0.94 8.06 -2.92 -0.02 -0.97 16 43 H 0.18 -2.78 8.06 -2.91 -0.02 -2.80 16 44 H 0.18 -2.96 8.06 -2.91 -0.02 -2.98 16 45 H 0.16 -1.42 8.06 -2.91 -0.02 -1.44 16 46 H 0.11 0.24 8.14 -2.39 -0.02 0.23 16 47 H 0.08 0.19 6.68 -2.39 -0.02 0.17 16 48 H 0.18 -1.32 6.29 -2.91 -0.02 -1.34 16 49 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 50 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 51 H 0.16 -1.14 8.14 -2.39 -0.02 -1.16 16 Total: 0.00 -27.17 430.94 -0.51 -27.68 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: 0.41 Total: -16.72 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.62 Total: 13.46 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -1.87 Total: -4.42 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -6.80 Total: -30.15 kcal Atomic # 14 Polarization: 8.02 SS G_CDS: 2.13 Total: 10.15 kcal Total: -27.17 -0.51 -27.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_13594088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.815 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds