Wall clock time and date at job start Mon Mar 8 2021 13:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47404 * 2 1 4 4 C 1.53002 * 109.46956 * 239.99495 * 2 1 3 5 5 O 1.45200 * 109.46817 * 119.99797 * 2 1 3 6 6 C 1.34636 * 117.00020 * 59.99962 * 5 2 1 7 7 O 1.21504 * 120.00004 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00060 * 179.97438 * 6 5 2 9 9 C 1.46495 * 120.00220 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.85218 * 336.19332 * 9 8 6 11 11 C 1.53952 * 113.54082 * 107.50187 * 9 8 6 12 12 C 1.53781 * 87.01899 * 89.19193 * 11 9 8 13 13 H 1.09005 * 113.61247 * 270.77483 * 12 11 9 14 14 C 1.52996 * 113.61773 * 139.95652 * 12 11 9 15 15 O 1.42905 * 109.47410 * 85.86001 * 14 12 11 16 16 C 1.35977 * 116.99798 * 180.02562 * 15 14 12 17 17 C 1.38655 * 119.98376 * 180.02562 * 16 15 14 18 18 C 1.50705 * 120.00534 * 0.02562 * 17 16 15 19 19 O 1.42899 * 109.46991 * 123.51558 * 18 17 16 20 20 Si 1.86295 * 109.47391 * 243.52153 * 18 17 16 21 21 C 1.38530 * 119.99277 * 180.02562 * 17 16 15 22 22 C 1.39260 * 119.87777 * 359.97438 * 21 17 16 23 23 C 1.38526 * 119.91902 * 0.03759 * 22 21 17 24 24 C 1.38219 * 120.10292 * 359.96815 * 23 22 21 25 25 O 1.36603 * 108.61585 * 179.97438 * 22 21 17 26 26 C 1.43983 * 105.47424 * 17.28504 * 25 22 21 27 27 O 1.36505 * 131.47162 * 179.97438 * 21 17 16 28 28 C 1.53777 * 87.17458 * 25.36105 * 12 11 9 29 29 H 1.09001 * 109.47273 * 300.00612 * 1 2 3 30 30 H 1.09005 * 109.46715 * 59.99737 * 1 2 3 31 31 H 1.08994 * 109.47545 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47127 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47399 * 299.99844 * 3 2 1 34 34 H 1.08998 * 109.47814 * 59.99778 * 3 2 1 35 35 H 1.08994 * 109.47081 * 300.00392 * 4 2 1 36 36 H 1.08998 * 109.46943 * 60.00171 * 4 2 1 37 37 H 1.09005 * 109.46799 * 180.02562 * 4 2 1 38 38 H 0.97003 * 119.99898 * 359.97438 * 8 6 5 39 39 H 1.08999 * 113.66379 * 334.66860 * 11 9 8 40 40 H 1.08996 * 113.61669 * 203.70796 * 11 9 8 41 41 H 1.09001 * 109.47209 * 325.86073 * 14 12 11 42 42 H 1.09004 * 109.47495 * 205.86403 * 14 12 11 43 43 H 1.09002 * 109.47092 * 3.52163 * 18 17 16 44 44 H 0.96694 * 114.00446 * 300.00641 * 19 18 17 45 45 H 1.48507 * 109.99537 * 294.56542 * 20 18 17 46 46 H 1.48501 * 110.00243 * 55.88201 * 20 18 17 47 47 H 1.07996 * 119.95244 * 179.97438 * 23 22 21 48 48 H 1.07999 * 119.96315 * 179.97438 * 24 23 22 49 49 H 1.09001 * 110.57129 * 91.43003 * 26 25 22 50 50 H 1.08993 * 110.57628 * 214.15377 * 26 25 22 51 51 H 1.09002 * 113.61440 * 89.15599 * 28 12 11 52 52 H 1.09000 * 113.61850 * 219.97556 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5042 8 7 2.0679 -2.6656 2.4168 9 6 1.6738 -4.0667 2.5834 10 1 0.7589 -4.3159 2.0457 11 6 2.8239 -5.0616 2.3439 12 6 3.1499 -4.9213 3.8402 13 1 3.8468 -4.1128 4.0613 14 6 3.5394 -6.2410 4.5091 15 8 4.9385 -6.4708 4.3305 16 6 5.4505 -7.6100 4.8683 17 6 6.8007 -7.8945 4.7324 18 6 7.7007 -6.9410 3.9892 19 8 8.7768 -6.5408 4.8400 20 14 8.3858 -7.7852 2.4764 21 6 7.3224 -9.0552 5.2797 22 6 6.4885 -9.9341 5.9664 23 6 5.1401 -9.6457 6.0994 24 6 4.6218 -8.4870 5.5523 25 8 7.2349 -10.9912 6.4041 26 6 8.6038 -10.5507 6.3324 27 8 8.5904 -9.5605 5.2875 28 6 1.6753 -4.5372 4.0475 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7490 -1.2491 36 1 1.6766 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2490 38 1 2.6281 -2.2369 3.0826 39 1 3.6057 -4.6772 1.6888 40 1 2.4869 -6.0592 2.0622 41 1 2.9764 -7.0575 4.0570 42 1 3.3127 -6.1894 5.5741 43 1 7.1298 -6.0627 3.6879 44 1 8.4932 -6.0936 5.6490 45 1 9.2730 -8.9063 2.8785 46 1 7.2754 -8.2941 1.6319 47 1 4.4929 -10.3271 6.6314 48 1 3.5702 -8.2646 5.6570 49 1 8.9127 -10.1049 7.2779 50 1 9.2598 -11.3803 6.0691 51 1 1.0235 -5.3911 4.2323 52 1 1.5310 -3.7310 4.7667 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096578_15734082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:25 Heat of formation + Delta-G solvation = -151.072048 kcal Electronic energy + Delta-G solvation = -35525.235649 eV Core-core repulsion = 30652.462096 eV Total energy + Delta-G solvation = -4872.773553 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.36199 -41.96315 -41.18737 -40.18090 -38.32243 -37.85631 -37.46995 -36.95732 -35.36083 -34.10039 -32.59774 -30.65063 -29.22126 -28.37353 -28.30471 -26.93471 -26.82829 -26.69260 -24.99379 -23.75368 -23.20115 -22.68662 -21.17794 -20.29826 -19.83200 -19.29172 -19.09736 -18.82815 -18.06134 -17.70772 -17.57452 -17.26062 -17.07168 -16.81490 -16.48193 -16.41961 -15.90769 -15.76793 -15.60464 -15.42237 -15.25576 -15.04844 -14.88460 -14.43491 -14.30880 -14.20310 -14.07715 -13.98635 -13.62033 -13.59206 -13.36303 -13.31118 -13.11373 -12.92633 -12.87289 -12.80376 -12.59823 -12.41418 -12.33960 -12.31618 -11.90187 -11.67513 -11.52287 -11.40110 -11.37298 -11.16256 -11.14406 -11.11616 -10.18396 -9.84022 -8.96516 -5.00208 -0.17482 -0.01751 1.13179 1.31326 1.42558 1.57470 1.72162 1.98368 2.05215 2.32553 2.51707 3.11121 3.16345 3.41739 3.50576 3.57727 3.63740 3.73655 3.74939 3.77599 3.80326 3.81658 3.87107 3.93798 3.93972 4.08307 4.15522 4.26693 4.30417 4.42541 4.45711 4.48884 4.60800 4.61716 4.69019 4.75233 4.76105 4.77439 4.81231 4.83158 4.87330 4.90096 4.92972 4.97836 5.02024 5.06020 5.08707 5.09634 5.18119 5.26589 5.31627 5.48514 5.61871 5.87004 6.20402 6.37591 6.63425 7.32877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.593 6.593 8 N -0.684 5.684 9 C 0.128 3.872 10 H 0.094 0.906 11 C -0.149 4.149 12 C -0.102 4.102 13 H 0.105 0.895 14 C 0.058 3.942 15 O -0.311 6.311 16 C 0.156 3.844 17 C -0.162 4.162 18 C -0.062 4.062 19 O -0.544 6.544 20 Si 0.795 3.205 21 C 0.068 3.932 22 C -0.032 4.032 23 C -0.053 4.053 24 C -0.193 4.193 25 O -0.323 6.323 26 C 0.203 3.797 27 O -0.316 6.316 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.376 0.624 45 H -0.290 1.290 46 H -0.281 1.281 47 H 0.163 0.837 48 H 0.179 0.821 49 H 0.105 0.895 50 H 0.154 0.846 51 H 0.120 0.880 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 3.956 3.540 5.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.343 5.343 9 C 0.024 3.976 10 H 0.112 0.888 11 C -0.188 4.188 12 C -0.121 4.121 13 H 0.123 0.877 14 C -0.016 4.016 15 O -0.225 6.225 16 C 0.109 3.891 17 C -0.163 4.163 18 C -0.171 4.171 19 O -0.350 6.350 20 Si 0.698 3.302 21 C 0.023 3.977 22 C -0.076 4.076 23 C -0.071 4.071 24 C -0.211 4.211 25 O -0.240 6.240 26 C 0.092 3.908 27 O -0.233 6.233 28 C -0.154 4.154 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.224 0.776 45 H -0.217 1.217 46 H -0.207 1.207 47 H 0.181 0.819 48 H 0.197 0.803 49 H 0.123 0.877 50 H 0.172 0.828 51 H 0.139 0.861 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.462 2.768 2.001 4.211 hybrid contribution -0.495 -0.471 1.628 1.765 sum -2.957 2.297 3.629 5.215 Atomic orbital electron populations 1.22474 0.93991 1.03707 1.03535 1.22348 0.94482 0.92557 0.81458 1.21894 1.02472 0.90875 1.04263 1.22475 1.01640 1.02237 0.97403 1.86310 1.71521 1.23292 1.47272 1.18332 0.78576 0.80719 0.82478 1.90906 1.42279 1.71050 1.44160 1.44375 1.54878 1.11903 1.23136 1.21905 0.98509 0.78074 0.99131 0.88761 1.23618 0.98198 1.00237 0.96752 1.22611 0.97688 0.96614 0.95150 0.87662 1.23248 0.77595 0.98362 1.02378 1.86058 1.27603 1.36478 1.72322 1.18205 0.90476 0.87123 0.93304 1.18650 0.93856 0.96118 1.07725 1.24940 0.91188 1.00316 1.00673 1.86707 1.32010 1.79835 1.36463 0.93345 0.79724 0.80822 0.76280 1.19429 0.84425 0.94456 0.99435 1.20033 0.95048 0.88592 1.03905 1.20271 0.90355 0.97542 0.98954 1.21376 1.01913 0.94795 1.03020 1.87350 1.18360 1.34532 1.83782 1.26081 0.83022 0.90462 0.91227 1.87467 1.27279 1.53514 1.55001 1.23315 0.94805 1.02925 0.94392 0.91865 0.89519 0.91758 0.91185 0.88353 0.91113 0.91813 0.89497 0.91963 0.74594 0.92007 0.88109 0.90022 0.89291 0.88406 0.77557 1.21681 1.20746 0.81908 0.80332 0.87749 0.82846 0.86136 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.47 8.37 71.98 0.60 0.13 16 2 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 3 C -0.14 0.35 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 5 O -0.37 -1.74 9.94 -55.45 -0.55 -2.29 16 6 C 0.65 3.64 8.06 129.79 1.05 4.69 16 7 O -0.59 -6.63 11.48 19.83 0.23 -6.41 16 8 N -0.68 0.91 5.26 -567.34 -2.99 -2.08 16 9 C 0.13 -0.48 4.33 45.58 0.20 -0.28 16 10 H 0.09 0.00 7.46 -2.39 -0.02 -0.02 16 11 C -0.15 0.65 7.44 31.18 0.23 0.89 16 12 C -0.10 0.86 3.88 -10.27 -0.04 0.82 16 13 H 0.11 -0.86 8.14 -2.38 -0.02 -0.87 16 14 C 0.06 -0.46 4.56 71.98 0.33 -0.14 16 15 O -0.31 0.34 8.90 -93.29 -0.83 -0.49 16 16 C 0.16 0.30 6.66 22.48 0.15 0.45 16 17 C -0.16 -1.04 4.48 -19.69 -0.09 -1.13 16 18 C -0.06 -0.30 2.71 71.24 0.19 -0.11 16 19 O -0.54 -2.82 12.49 -148.98 -1.86 -4.68 16 20 Si 0.80 5.12 32.02 68.60 2.20 7.31 16 21 C 0.07 0.63 5.95 22.59 0.13 0.76 16 22 C -0.03 -0.24 7.15 22.58 0.16 -0.07 16 23 C -0.05 -0.07 10.05 22.33 0.22 0.15 16 24 C -0.19 0.33 9.03 22.38 0.20 0.53 16 25 O -0.32 -2.53 11.41 -77.26 -0.88 -3.41 16 26 C 0.20 0.70 8.89 113.37 1.01 1.70 16 27 O -0.32 -3.38 10.18 -76.10 -0.78 -4.16 16 28 C -0.12 1.20 7.39 31.12 0.23 1.43 16 29 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.19 8.14 -2.38 -0.02 -0.20 16 33 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 36 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.42 -2.41 8.81 -92.71 -0.82 -3.23 16 39 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.10 -0.53 7.92 -2.39 -0.02 -0.55 16 41 H 0.08 -0.81 7.39 -2.39 -0.02 -0.83 16 42 H 0.09 -1.01 7.66 -2.39 -0.02 -1.03 16 43 H 0.10 0.17 6.82 -2.39 -0.02 0.15 16 44 H 0.38 -0.38 9.07 -74.06 -0.67 -1.06 16 45 H -0.29 -4.15 6.76 99.48 0.67 -3.47 16 46 H -0.28 -2.88 7.11 99.48 0.71 -2.17 16 47 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 48 H 0.18 -1.62 6.29 -2.91 -0.02 -1.63 16 49 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 51 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 52 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 Total: 0.00 -23.34 419.89 -0.17 -23.51 By element: Atomic # 1 Polarization: -17.96 SS G_CDS: -0.52 Total: -18.48 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.81 Total: 11.16 kcal Atomic # 7 Polarization: 0.91 SS G_CDS: -2.99 Total: -2.08 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -4.67 Total: -21.44 kcal Atomic # 14 Polarization: 5.12 SS G_CDS: 2.20 Total: 7.31 kcal Total: -23.34 -0.17 -23.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_15734082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.559 kcal (2) G-P(sol) polarization free energy of solvation -23.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds