Wall clock time and date at job start Mon Mar 8 2021 13:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52996 * 109.47042 * 239.99985 * 2 1 3 5 5 O 1.45202 * 109.47163 * 119.99775 * 2 1 3 6 6 C 1.34637 * 116.99635 * 60.00219 * 5 2 1 7 7 O 1.21506 * 120.00344 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99431 * 180.02562 * 6 5 2 9 9 C 1.46505 * 119.99461 * 180.02562 * 8 6 5 10 10 H 1.08995 * 112.85264 * 336.19197 * 9 8 6 11 11 C 1.53785 * 113.69254 * 107.46541 * 9 8 6 12 12 C 1.53777 * 87.07933 * 139.98747 * 11 9 8 13 13 H 1.09001 * 113.69233 * 89.13029 * 12 11 9 14 14 C 1.52999 * 113.61231 * 220.01438 * 12 11 9 15 15 O 1.42903 * 109.47478 * 272.49922 * 14 12 11 16 16 C 1.35971 * 117.00192 * 179.97438 * 15 14 12 17 17 C 1.38655 * 119.98677 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00238 * 0.02562 * 17 16 15 19 19 O 1.42898 * 109.47009 * 245.07825 * 18 17 16 20 20 Si 1.86303 * 109.46838 * 125.08287 * 18 17 16 21 21 C 1.38534 * 119.98878 * 179.72482 * 17 16 15 22 22 C 1.39255 * 119.88078 * 0.25653 * 21 17 16 23 23 C 1.38519 * 119.91910 * 359.97438 * 22 21 17 24 24 C 1.38216 * 120.10376 * 359.97438 * 23 22 21 25 25 O 1.36602 * 108.61444 * 180.02562 * 22 21 17 26 26 C 1.43979 * 105.47852 * 342.71332 * 25 22 21 27 27 O 1.36510 * 131.46751 * 180.28310 * 21 17 16 28 28 C 1.53772 * 87.08490 * 334.56502 * 12 11 9 29 29 H 1.09007 * 109.47117 * 300.00134 * 1 2 3 30 30 H 1.08994 * 109.47391 * 59.99567 * 1 2 3 31 31 H 1.08997 * 109.47097 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47439 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47026 * 300.00720 * 3 2 1 34 34 H 1.09004 * 109.46840 * 59.99547 * 3 2 1 35 35 H 1.08992 * 109.47245 * 299.99874 * 4 2 1 36 36 H 1.09006 * 109.46996 * 60.00295 * 4 2 1 37 37 H 1.09000 * 109.47437 * 179.97438 * 4 2 1 38 38 H 0.96996 * 120.00703 * 359.97438 * 8 6 5 39 39 H 1.09000 * 113.61219 * 25.43660 * 11 9 8 40 40 H 1.08996 * 113.60735 * 254.53825 * 11 9 8 41 41 H 1.09006 * 109.47482 * 152.50041 * 14 12 11 42 42 H 1.09000 * 109.47154 * 32.50221 * 14 12 11 43 43 H 1.08992 * 109.47042 * 5.08427 * 18 17 16 44 44 H 0.96706 * 113.99402 * 60.00584 * 19 18 17 45 45 H 1.48501 * 109.99891 * 176.25321 * 20 18 17 46 46 H 1.48491 * 110.00162 * 297.57472 * 20 18 17 47 47 H 1.08004 * 119.95086 * 179.97438 * 23 22 21 48 48 H 1.07999 * 119.96432 * 180.02562 * 24 23 22 49 49 H 1.08997 * 110.57651 * 268.57424 * 26 25 22 50 50 H 1.09003 * 110.57483 * 145.69070 * 26 25 22 51 51 H 1.08998 * 113.61327 * 139.98341 * 28 12 11 52 52 H 1.08993 * 113.61694 * 270.80279 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5041 8 7 2.0673 -2.6653 2.4172 9 6 1.6741 -4.0668 2.5831 10 1 0.7602 -4.3167 2.0443 11 6 2.8214 -5.0628 2.3452 12 6 2.2718 -5.8603 3.5397 13 1 1.5213 -6.6010 3.2637 14 6 3.3617 -6.4296 4.4500 15 8 3.7710 -7.7084 3.9609 16 6 4.7409 -8.3555 4.6606 17 6 5.1851 -9.6000 4.2406 18 6 4.5933 -10.2351 3.0087 19 8 3.8899 -11.4233 3.3765 20 14 5.9579 -10.6655 1.8156 21 6 6.1773 -10.2567 4.9502 22 6 6.7229 -9.6670 6.0876 23 6 6.2725 -8.4257 6.5059 24 6 5.2832 -7.7718 5.7959 25 8 7.6720 -10.5049 6.6006 26 6 7.4142 -11.7892 6.0031 27 8 6.7838 -11.4632 4.7503 28 6 1.6742 -4.5374 4.0472 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2492 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.6268 -2.2365 3.0834 39 1 3.8104 -4.6395 2.5206 40 1 2.7492 -5.5932 1.3957 41 1 2.9711 -6.5358 5.4621 42 1 4.2168 -5.7537 4.4597 43 1 3.9037 -9.5363 2.5353 44 1 3.1637 -11.2741 3.9975 45 1 5.3973 -11.3737 0.6369 46 1 6.6598 -9.4315 1.3802 47 1 6.6950 -7.9680 7.3883 48 1 4.9340 -6.8038 6.1239 49 1 6.7412 -12.3749 6.6292 50 1 8.3470 -12.3272 5.8339 51 1 0.6760 -4.6437 4.4718 52 1 2.3491 -3.9713 4.6891 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15096578_15734236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:29:31 Heat of formation + Delta-G solvation = -152.043351 kcal Electronic energy + Delta-G solvation = -35298.449099 eV Core-core repulsion = 30425.633427 eV Total energy + Delta-G solvation = -4872.815672 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.181 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.20245 -41.86773 -41.19337 -40.19411 -38.23024 -37.77347 -37.32961 -36.82726 -35.32531 -34.24208 -32.48941 -30.58457 -29.29833 -28.33795 -28.29706 -26.99023 -26.77824 -26.67447 -25.11582 -23.62939 -22.96571 -22.30852 -21.43504 -20.63325 -19.77114 -19.07710 -18.94735 -18.72033 -17.97661 -17.81532 -17.51168 -17.23061 -17.08113 -16.77724 -16.59933 -16.23588 -16.02272 -15.69959 -15.50311 -15.41752 -15.31001 -15.00083 -14.50771 -14.35140 -14.17312 -14.13081 -13.86456 -13.85938 -13.74419 -13.52367 -13.43215 -13.31299 -13.12067 -12.87278 -12.83746 -12.78213 -12.67488 -12.50210 -12.29512 -12.18660 -12.04985 -11.94500 -11.62182 -11.30822 -11.28168 -11.25287 -11.06212 -10.97394 -10.19275 -9.67446 -8.83274 -4.69236 -0.02744 0.11991 1.16649 1.43007 1.58178 1.78811 1.85517 2.05595 2.10310 2.46001 2.59780 3.08858 3.19596 3.27650 3.30620 3.56591 3.57241 3.67874 3.73918 3.76731 3.78648 3.82409 3.90077 3.96245 3.98471 4.00732 4.06519 4.10981 4.18027 4.30171 4.38981 4.41830 4.47751 4.51391 4.55385 4.62117 4.69560 4.74834 4.77263 4.80038 4.86230 4.86600 4.92195 4.92381 5.00669 5.03260 5.08411 5.10076 5.14972 5.30496 5.35657 5.46077 5.58742 5.99676 6.20995 6.38951 6.62265 7.40686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.565 6.565 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.123 0.877 11 C -0.148 4.148 12 C -0.107 4.107 13 H 0.110 0.890 14 C 0.070 3.930 15 O -0.306 6.306 16 C 0.153 3.847 17 C -0.142 4.142 18 C -0.063 4.063 19 O -0.533 6.533 20 Si 0.746 3.254 21 C 0.096 3.904 22 C -0.005 4.005 23 C -0.054 4.054 24 C -0.202 4.202 25 O -0.307 6.307 26 C 0.211 3.789 27 O -0.289 6.289 28 C -0.135 4.135 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.406 0.594 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.364 0.636 45 H -0.250 1.250 46 H -0.252 1.252 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.087 0.913 50 H 0.136 0.864 51 H 0.086 0.914 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 2.389 4.475 5.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.454 6.454 8 N -0.360 5.360 9 C 0.037 3.963 10 H 0.140 0.860 11 C -0.187 4.187 12 C -0.126 4.126 13 H 0.128 0.872 14 C -0.005 4.005 15 O -0.220 6.220 16 C 0.107 3.893 17 C -0.144 4.144 18 C -0.172 4.172 19 O -0.338 6.338 20 Si 0.644 3.356 21 C 0.050 3.950 22 C -0.049 4.049 23 C -0.073 4.073 24 C -0.221 4.221 25 O -0.223 6.223 26 C 0.100 3.900 27 O -0.204 6.204 28 C -0.173 4.173 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.211 0.789 45 H -0.174 1.174 46 H -0.176 1.176 47 H 0.159 0.841 48 H 0.161 0.839 49 H 0.104 0.896 50 H 0.154 0.846 51 H 0.105 0.895 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.005 1.871 2.560 3.326 hybrid contribution -0.960 1.120 1.157 1.875 sum 0.045 2.991 3.717 4.771 Atomic orbital electron populations 1.22522 0.93826 1.05041 1.02726 1.22121 0.94453 0.91561 0.81856 1.21881 1.02327 0.92350 1.03348 1.22521 1.01603 1.03455 0.96556 1.86307 1.71493 1.23466 1.46750 1.18171 0.78611 0.80563 0.82264 1.90918 1.40930 1.70516 1.43057 1.44737 1.55431 1.12138 1.23742 1.22504 0.99331 0.77581 0.96867 0.85952 1.23636 0.99046 0.96794 0.99239 1.22349 0.97706 0.96150 0.96418 0.87219 1.22908 0.97252 0.82320 0.97995 1.86052 1.51701 1.32773 1.51425 1.18152 0.89348 0.90927 0.90907 1.18358 0.99388 0.94722 1.01910 1.25125 1.03237 0.89736 0.99101 1.86775 1.49515 1.30202 1.67275 0.92531 0.82077 0.84168 0.76778 1.19060 0.94023 0.87317 0.94564 1.19632 0.93859 0.95689 0.95740 1.19851 0.95774 0.91579 1.00087 1.20968 1.01541 1.02361 0.97248 1.87408 1.48910 1.19927 1.66103 1.25756 0.99194 0.85719 0.79346 1.87393 1.65490 1.33491 1.34066 1.23390 1.02666 0.95057 0.96206 0.92121 0.90910 0.89440 0.91404 0.89916 0.91391 0.89430 0.90914 0.92135 0.75843 0.89245 0.90160 0.91171 0.91328 0.89896 0.78938 1.17411 1.17597 0.84140 0.83885 0.89584 0.84636 0.89525 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.24 8.37 37.16 0.31 0.07 16 2 C 0.14 0.18 1.13 -90.62 -0.10 0.08 16 3 C -0.14 0.10 8.85 37.16 0.33 0.43 16 4 C -0.18 -0.27 8.37 37.16 0.31 0.04 16 5 O -0.37 -0.84 9.94 -40.32 -0.40 -1.24 16 6 C 0.65 1.67 8.06 54.06 0.44 2.11 16 7 O -0.57 -2.82 11.48 -19.28 -0.22 -3.04 16 8 N -0.70 0.45 5.36 -57.93 -0.31 0.14 16 9 C 0.14 -0.22 4.24 -67.11 -0.28 -0.51 16 10 H 0.12 -0.01 7.46 -51.93 -0.39 -0.40 16 11 C -0.15 0.26 7.43 -25.92 -0.19 0.07 16 12 C -0.11 0.32 4.01 -89.81 -0.36 -0.04 16 13 H 0.11 -0.29 8.14 -51.93 -0.42 -0.71 16 14 C 0.07 -0.19 4.58 37.16 0.17 -0.02 16 15 O -0.31 -0.08 8.90 -19.65 -0.17 -0.25 16 16 C 0.15 0.15 6.66 -39.26 -0.26 -0.11 16 17 C -0.14 -0.30 4.61 -104.36 -0.48 -0.78 16 18 C -0.06 -0.15 2.72 36.01 0.10 -0.05 16 19 O -0.53 -1.28 12.61 -35.23 -0.44 -1.72 16 20 Si 0.75 1.97 31.13 -169.99 -5.29 -3.32 16 21 C 0.10 0.22 6.02 -39.09 -0.24 -0.02 16 22 C 0.00 -0.01 7.15 -39.10 -0.28 -0.29 16 23 C -0.05 -0.01 10.05 -39.49 -0.40 -0.41 16 24 C -0.20 0.10 9.03 -39.42 -0.36 -0.25 16 25 O -0.31 -0.56 11.41 -46.03 -0.53 -1.08 16 26 C 0.21 -0.19 8.89 101.05 0.90 0.71 16 27 O -0.29 -0.46 9.73 -45.72 -0.45 -0.91 16 28 C -0.13 0.54 7.39 -25.92 -0.19 0.35 16 29 H 0.06 0.06 8.14 -51.92 -0.42 -0.36 16 30 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 31 H 0.09 0.30 5.88 -51.93 -0.31 -0.01 16 32 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 33 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.09 0.32 5.88 -51.93 -0.31 0.01 16 36 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.41 -1.14 8.84 -40.82 -0.36 -1.50 16 39 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 40 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 41 H 0.07 -0.27 7.65 -51.93 -0.40 -0.67 16 42 H 0.07 -0.24 7.37 -51.93 -0.38 -0.63 16 43 H 0.08 0.18 6.82 -51.93 -0.35 -0.18 16 44 H 0.36 -0.21 9.08 45.56 0.41 0.20 16 45 H -0.25 -1.17 7.11 56.52 0.40 -0.77 16 46 H -0.25 -1.03 7.11 56.52 0.40 -0.63 16 47 H 0.14 -0.24 8.06 -52.48 -0.42 -0.66 16 48 H 0.14 -0.44 6.29 -52.49 -0.33 -0.77 16 49 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 50 H 0.14 -0.52 8.14 -51.93 -0.42 -0.94 16 51 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 52 H 0.09 -0.49 8.08 -51.93 -0.42 -0.91 16 LS Contribution 419.36 15.07 6.32 6.32 Total: 0.00 -7.82 419.36 -10.02 -17.84 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -7.93 Total: -14.12 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.59 Total: 1.38 kcal Atomic # 7 Polarization: 0.45 SS G_CDS: -0.31 Total: 0.14 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -2.21 Total: -8.24 kcal Atomic # 14 Polarization: 1.97 SS G_CDS: -5.29 Total: -3.32 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -7.82 -10.02 -17.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096578_15734236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.205 kcal (2) G-P(sol) polarization free energy of solvation -7.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds