Wall clock time and date at job start Mon Mar 8 2021 12:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.47446 * 2 1 4 4 C 1.86307 * 109.46937 * 239.99776 * 2 1 3 5 5 C 1.86303 * 109.46943 * 120.00252 * 2 1 3 6 6 O 1.42899 * 109.47197 * 66.58718 * 5 2 1 7 7 C 1.35912 * 116.99383 * 282.06549 * 6 5 2 8 8 C 1.38643 * 120.04917 * 353.85116 * 7 6 5 9 9 C 1.38402 * 119.93007 * 180.02562 * 8 7 6 10 10 F 1.35099 * 119.98949 * 180.02562 * 9 8 7 11 11 C 1.38468 * 120.02084 * 359.74692 * 9 8 7 12 12 C 1.50698 * 119.95247 * 180.27217 * 11 9 8 13 13 O 1.42904 * 109.46887 * 75.23524 * 12 11 9 14 14 Si 1.86294 * 109.47443 * 315.23661 * 12 11 9 15 15 H 1.48503 * 109.47510 * 60.00001 * 14 12 11 16 16 H 1.48500 * 109.47279 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47210 * 299.99853 * 14 12 11 18 18 C 1.38259 * 120.08826 * 0.50967 * 11 9 8 19 19 C 1.38193 * 120.06930 * 359.49053 * 18 11 9 20 20 Br 1.89105 * 120.00738 * 180.27557 * 19 18 11 21 21 H 1.09005 * 109.46794 * 295.55658 * 1 2 3 22 22 H 1.09008 * 109.46840 * 55.54962 * 1 2 3 23 23 H 1.08997 * 109.47071 * 175.55340 * 1 2 3 24 24 H 1.08994 * 109.46890 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46717 * 300.00153 * 3 2 1 26 26 H 1.09000 * 109.47138 * 59.99982 * 3 2 1 27 27 H 1.08998 * 109.46944 * 305.00568 * 4 2 1 28 28 H 1.09002 * 109.46740 * 65.00340 * 4 2 1 29 29 H 1.09002 * 109.47072 * 185.00072 * 4 2 1 30 30 H 1.08990 * 109.46983 * 306.57885 * 5 2 1 31 31 H 1.09007 * 109.46643 * 186.58505 * 5 2 1 32 32 H 1.07994 * 120.03386 * 0.02562 * 8 7 6 33 33 H 1.08998 * 109.46937 * 195.23023 * 12 11 9 34 34 H 0.96698 * 114.00383 * 300.00225 * 13 12 11 35 35 H 1.07997 * 119.96178 * 179.76365 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8783 1.5211 6 8 2.1380 -2.2628 1.4464 7 6 0.8528 -2.5942 1.7392 8 6 -0.0222 -1.6290 2.2134 9 6 -1.3302 -1.9693 2.5113 10 9 -2.1841 -1.0296 2.9730 11 6 -1.7656 -3.2713 2.3309 12 6 -3.1919 -3.6388 2.6499 13 8 -4.0524 -3.1450 1.6214 14 14 -3.6777 -2.8832 4.2820 15 1 -3.5538 -1.4057 4.1999 16 1 -5.0833 -3.2449 4.5960 17 1 -2.7835 -3.3963 5.3507 18 6 -0.8923 -4.2357 1.8630 19 6 0.4146 -3.9000 1.5644 20 35 1.6055 -5.2187 0.9172 21 1 -0.3633 0.4434 0.9272 22 1 -0.3633 0.5814 -0.8475 23 1 -0.3633 -1.0245 -0.0797 24 1 3.5740 1.7563 -0.0005 25 1 2.1207 2.2702 -0.8900 26 1 2.1208 2.2703 0.8900 27 1 2.0492 -1.8768 -1.5671 28 1 2.1956 -0.3153 -2.4089 29 1 3.5703 -0.9566 -1.4775 30 1 2.0277 -0.4370 2.4071 31 1 3.5676 -0.7774 1.5820 32 1 0.3165 -0.6127 2.3502 33 1 -3.2828 -4.7233 2.7101 34 1 -4.0230 -2.1848 1.5113 35 1 -1.2330 -5.2513 1.7267 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096606_3095236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:46:00 Heat of formation + Delta-G solvation = -98.927488 kcal Electronic energy + Delta-G solvation = -20025.768571 eV Core-core repulsion = 16723.836290 eV Total energy + Delta-G solvation = -3301.932281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 336.011 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.50875 -41.45833 -39.13133 -37.32945 -33.38003 -32.37496 -30.30127 -29.58665 -28.41337 -28.37216 -28.12117 -26.26843 -23.79553 -22.67144 -19.78329 -18.76146 -18.18829 -17.55070 -17.27336 -16.80612 -16.54885 -15.91224 -15.58524 -15.44057 -14.89549 -14.44031 -14.19999 -14.13534 -13.95343 -13.82997 -13.78715 -13.33136 -13.26038 -13.17732 -13.04605 -12.96243 -12.53470 -12.31423 -12.19028 -11.73380 -11.30444 -11.22645 -10.88688 -10.83988 -10.81995 -10.46692 -9.92843 -9.18661 -0.33691 -0.08096 0.55468 1.13355 1.43456 1.47340 1.50633 1.68973 1.80512 1.89444 2.16716 2.25704 2.54340 2.91672 3.33652 3.44246 3.60431 3.75084 4.08003 4.17059 4.39266 4.51918 4.58432 4.69322 4.73973 4.76592 4.77405 4.79904 4.80984 4.82369 4.86372 4.93533 5.34086 5.51562 5.59252 5.61786 6.04829 6.56158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.052 2.948 3 C -0.454 4.454 4 C -0.463 4.463 5 C -0.270 4.270 6 O -0.284 6.284 7 C 0.177 3.823 8 C -0.234 4.234 9 C 0.140 3.860 10 F -0.122 7.122 11 C -0.189 4.189 12 C -0.067 4.067 13 O -0.546 6.546 14 Si 0.956 3.044 15 H -0.235 1.235 16 H -0.271 1.271 17 H -0.264 1.264 18 C -0.005 4.005 19 C -0.153 4.153 20 Br -0.033 7.033 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.176 0.824 33 H 0.139 0.861 34 H 0.385 0.615 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 3.055 0.267 3.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.244 2.756 3 C -0.562 4.562 4 C -0.569 4.569 5 C -0.388 4.388 6 O -0.195 6.195 7 C 0.128 3.872 8 C -0.254 4.254 9 C 0.121 3.879 10 F -0.100 7.100 11 C -0.191 4.191 12 C -0.178 4.178 13 O -0.352 6.352 14 Si 0.780 3.220 15 H -0.158 1.158 16 H -0.196 1.196 17 H -0.188 1.188 18 C -0.024 4.024 19 C -0.233 4.233 20 Br 0.052 6.948 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.193 0.807 33 H 0.156 0.844 34 H 0.234 0.766 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.431 2.197 0.746 2.726 hybrid contribution -0.049 0.863 -0.070 0.867 sum 1.382 3.060 0.677 3.425 Atomic orbital electron populations 1.26637 1.21129 1.04241 1.05176 0.78894 0.66220 0.65899 0.64538 1.26113 1.06862 1.17996 1.05267 1.26260 1.06556 1.07937 1.16146 1.28676 1.08685 0.84096 1.17380 1.86184 1.22571 1.28482 1.82284 1.18442 0.84983 0.91707 0.92107 1.21409 0.92908 1.02440 1.08614 1.17462 0.87804 0.85870 0.96809 1.91592 1.68684 1.64409 1.85324 1.20261 0.98924 0.92318 1.07616 1.24851 0.85457 1.06181 1.01308 1.86528 1.63952 1.28292 1.56453 0.85869 0.79823 0.81343 0.74950 1.15786 1.19637 1.18788 1.20924 0.88983 1.00702 0.91815 1.21276 0.96104 0.92453 1.13512 1.96768 1.61212 1.50282 1.86490 0.90385 0.90593 0.92000 0.90544 0.90709 0.90321 0.92165 0.91026 0.90994 0.89231 0.85264 0.80686 0.84350 0.76630 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.04 7.04 113.37 0.80 2.84 16 2 Si 1.05 -7.36 11.68 68.60 0.80 -6.55 16 3 C -0.45 3.15 8.65 113.37 0.98 4.13 16 4 C -0.46 1.04 8.65 113.37 0.98 2.03 16 5 C -0.27 1.47 5.31 113.37 0.60 2.07 16 6 O -0.28 -0.26 9.13 -92.55 -0.84 -1.10 16 7 C 0.18 0.25 5.78 22.51 0.13 0.38 16 8 C -0.23 0.22 5.62 22.41 0.13 0.35 16 9 C 0.14 0.03 6.62 22.36 0.15 0.18 16 10 F -0.12 -0.06 12.59 44.97 0.57 0.50 16 11 C -0.19 0.00 4.79 -19.81 -0.09 -0.09 16 12 C -0.07 0.09 2.81 71.24 0.20 0.29 16 13 O -0.55 -0.38 12.88 -148.98 -1.92 -2.30 16 14 Si 0.96 0.37 26.08 68.60 1.79 2.16 16 15 H -0.23 -0.25 5.28 99.48 0.53 0.27 16 16 H -0.27 -0.92 7.11 99.48 0.71 -0.21 16 17 H -0.26 -0.63 7.11 99.48 0.71 0.08 16 18 C 0.00 0.00 9.40 22.26 0.21 0.21 16 19 C -0.15 -0.37 6.24 22.40 0.14 -0.23 16 20 Br -0.03 -0.12 33.16 -20.37 -0.68 -0.79 16 21 H 0.08 -0.45 6.50 -2.38 -0.02 -0.47 16 22 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 23 H 0.06 -0.10 6.55 -2.39 -0.02 -0.11 16 24 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 25 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 26 H 0.08 -0.62 7.96 -2.39 -0.02 -0.64 16 27 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 30 H 0.09 -0.73 6.06 -2.39 -0.01 -0.75 16 31 H 0.13 -1.04 7.96 -2.38 -0.02 -1.06 16 32 H 0.18 -0.99 4.24 -2.91 -0.01 -1.00 16 33 H 0.14 -0.65 7.77 -2.39 -0.02 -0.67 16 34 H 0.39 -1.66 8.44 -74.06 -0.63 -2.28 16 35 H 0.17 -0.64 8.00 -2.91 -0.02 -0.66 16 Total: 0.00 -10.20 307.18 5.00 -5.20 By element: Atomic # 1 Polarization: -10.33 SS G_CDS: 1.06 Total: -9.27 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.22 Total: 12.14 kcal Atomic # 8 Polarization: -0.64 SS G_CDS: -2.76 Total: -3.40 kcal Atomic # 9 Polarization: -0.06 SS G_CDS: 0.57 Total: 0.50 kcal Atomic # 14 Polarization: -6.98 SS G_CDS: 2.59 Total: -4.39 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.68 Total: -0.79 kcal Total: -10.20 5.00 -5.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_3095236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.726 kcal (2) G-P(sol) polarization free energy of solvation -10.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds