Wall clock time and date at job start Mon Mar 8 2021 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86308 * 109.46889 * 2 1 4 4 C 1.86296 * 109.47559 * 239.99946 * 2 1 3 5 5 C 1.86798 * 109.47086 * 119.99761 * 2 1 3 6 6 C 1.38231 * 120.00385 * 90.00348 * 5 2 1 7 7 C 1.38227 * 120.00750 * 180.02562 * 6 5 2 8 8 C 1.38236 * 119.99481 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99721 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47317 * 89.99895 * 9 8 7 11 11 C 1.35911 * 117.00286 * 179.97438 * 10 9 8 12 12 C 1.38643 * 120.04355 * 359.97438 * 11 10 9 13 13 C 1.38405 * 119.92732 * 180.02562 * 12 11 10 14 14 F 1.35097 * 119.98701 * 180.02562 * 13 12 11 15 15 C 1.38460 * 120.02010 * 359.97438 * 13 12 11 16 16 C 1.50703 * 119.94877 * 179.97438 * 15 13 12 17 17 O 1.42898 * 109.47560 * 284.99889 * 16 15 13 18 18 Si 1.86302 * 109.46600 * 165.00237 * 16 15 13 19 19 H 1.48500 * 109.47269 * 60.00156 * 18 16 15 20 20 H 1.48503 * 109.46982 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47283 * 299.99922 * 18 16 15 22 22 C 1.38254 * 120.09662 * 0.02562 * 15 13 12 23 23 C 1.38200 * 120.06458 * 359.97438 * 22 15 13 24 24 Br 1.89099 * 120.00801 * 179.97438 * 23 22 15 25 25 C 1.38229 * 120.00326 * 0.25048 * 8 7 6 26 26 C 1.38233 * 119.99834 * 359.48945 * 25 8 7 27 27 H 1.08998 * 109.47539 * 300.00137 * 1 2 3 28 28 H 1.09004 * 109.47417 * 60.00252 * 1 2 3 29 29 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47173 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46885 * 300.00074 * 3 2 1 32 32 H 1.08998 * 109.47142 * 59.99620 * 3 2 1 33 33 H 1.08997 * 109.46952 * 300.00417 * 4 2 1 34 34 H 1.09004 * 109.46918 * 59.99496 * 4 2 1 35 35 H 1.08998 * 109.47431 * 179.97438 * 4 2 1 36 36 H 1.08007 * 119.99787 * 359.97438 * 6 5 2 37 37 H 1.07994 * 120.00599 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47598 * 329.99977 * 9 8 7 39 39 H 1.09008 * 109.46986 * 209.99656 * 9 8 7 40 40 H 1.07998 * 120.03600 * 0.29450 * 12 11 10 41 41 H 1.09000 * 109.47252 * 45.00760 * 16 15 13 42 42 H 0.96695 * 114.00587 * 300.00683 * 17 16 15 43 43 H 1.07994 * 119.96848 * 179.97438 * 22 15 13 44 44 H 1.08003 * 120.00398 * 179.72674 * 25 8 7 45 45 H 1.08003 * 120.00208 * 180.23250 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7161 -2.2430 1.4911 7 6 3.1763 -2.8948 2.6199 8 6 3.4056 -2.1839 3.7831 9 6 3.9069 -2.8945 5.0139 10 8 5.3359 -2.8946 5.0153 11 6 5.9520 -3.4997 6.0647 12 6 5.1969 -4.0806 7.0720 13 6 5.8268 -4.6958 8.1399 14 9 5.0922 -5.2627 9.1218 15 6 7.2096 -4.7313 8.2016 16 6 7.8938 -5.4010 9.3654 17 8 7.7994 -4.5638 10.5196 18 14 9.6874 -5.6867 8.9505 19 1 10.3447 -4.3844 8.6725 20 1 10.3616 -6.3472 10.0970 21 1 9.7856 -6.5567 7.7511 22 6 7.9634 -4.1523 7.1977 23 6 7.3384 -3.5371 6.1297 24 35 8.3711 -2.7450 4.7578 25 6 3.1698 -0.8224 3.8190 26 6 2.7146 -0.1698 2.6886 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.5739 1.7566 -0.0005 31 1 2.1205 2.2704 -0.8900 32 1 2.1205 2.2704 0.8899 33 1 2.1207 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5741 -0.8778 -1.5213 36 1 2.5357 -2.7987 0.5827 37 1 3.3560 -3.9593 2.5933 38 1 3.5436 -3.9222 5.0135 39 1 3.5427 -2.3808 5.9037 40 1 4.1184 -4.0569 7.0212 41 1 7.4114 -6.3569 9.5694 42 1 8.2087 -3.6947 10.4097 43 1 9.0418 -4.1808 7.2481 44 1 3.3447 -0.2678 4.7291 45 1 2.5339 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_7_15096606_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:59:45 Heat of formation + Delta-G solvation = -104.013134 kcal Electronic energy + Delta-G solvation = -27374.468118 eV Core-core repulsion = 23248.335507 eV Total energy + Delta-G solvation = -4126.132611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 412.042 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06677 -41.59759 -40.17072 -39.09708 -37.37478 -33.58234 -33.04855 -32.10415 -31.94485 -30.09802 -29.61045 -28.47742 -28.44962 -27.79000 -26.35816 -24.23224 -23.54952 -22.72109 -22.07451 -19.92684 -18.73771 -18.22691 -17.46007 -17.40357 -17.22309 -16.90257 -16.52496 -16.16035 -15.87989 -15.64594 -15.56335 -15.37550 -15.10141 -14.43414 -14.42571 -14.29128 -14.19428 -14.07954 -13.94682 -13.81078 -13.64017 -13.33886 -13.30426 -13.29292 -13.13679 -12.97071 -12.58660 -12.42069 -12.32476 -12.20819 -11.92238 -11.83198 -11.67308 -11.21466 -11.08707 -10.94120 -10.88895 -10.55678 -10.12520 -9.83670 -9.76101 -9.40013 -0.33577 -0.17464 0.08064 0.49186 0.55511 1.01313 1.31742 1.43422 1.65340 1.75934 1.80944 1.82717 2.04501 2.06854 2.50285 2.89743 2.98776 3.24765 3.30530 3.49524 3.64740 3.67057 3.67945 3.95838 4.02608 4.12488 4.16194 4.24869 4.44404 4.46195 4.55222 4.61849 4.64146 4.66868 4.67965 4.71876 4.72505 4.72776 4.73046 4.80665 4.93375 5.09119 5.27837 5.34092 5.41959 5.46193 5.50277 5.54512 5.57325 5.93748 6.04966 6.45435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.104 4.104 8 C -0.090 4.090 9 C 0.096 3.904 10 O -0.285 6.285 11 C 0.196 3.804 12 C -0.245 4.245 13 C 0.189 3.811 14 F -0.119 7.119 15 C -0.191 4.191 16 C -0.074 4.074 17 O -0.533 6.533 18 Si 0.942 3.058 19 H -0.246 1.246 20 H -0.245 1.245 21 H -0.243 1.243 22 C -0.032 4.032 23 C -0.136 4.136 24 Br -0.020 7.020 25 C -0.104 4.104 26 C -0.091 4.091 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.121 0.879 42 H 0.377 0.623 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 0.927 -1.968 2.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.400 4.400 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.090 4.090 9 C 0.021 3.979 10 O -0.198 6.198 11 C 0.147 3.853 12 C -0.265 4.265 13 C 0.169 3.831 14 F -0.097 7.097 15 C -0.194 4.194 16 C -0.185 4.185 17 O -0.338 6.338 18 Si 0.763 3.237 19 H -0.170 1.170 20 H -0.169 1.169 21 H -0.166 1.166 22 C -0.051 4.051 23 C -0.217 4.217 24 Br 0.065 6.935 25 C -0.122 4.122 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.224 0.776 43 H 0.166 0.834 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.356 0.604 -2.527 2.622 hybrid contribution -0.790 0.088 0.626 1.011 sum -1.145 0.691 -1.901 2.324 Atomic orbital electron populations 1.26124 1.20398 1.04594 1.04537 0.78186 0.66852 0.66143 0.63665 1.26138 1.06516 1.18527 1.04591 1.26137 1.06518 1.08047 1.15075 1.27500 1.02766 0.99516 1.10230 1.21080 0.97464 0.94674 0.97721 1.21141 0.98605 0.99905 0.92534 1.19347 1.01312 0.94196 0.94184 1.21814 0.77795 1.00953 0.97310 1.86337 1.21630 1.71403 1.40398 1.18265 0.90363 0.90139 0.86534 1.21200 1.01660 1.07480 0.96190 1.17161 0.88255 0.92540 0.85178 1.91574 1.76738 1.81661 1.59698 1.20251 0.92520 1.06645 0.99937 1.24877 1.11458 0.96700 0.85423 1.86571 1.82276 1.30112 1.34851 0.85793 0.74396 0.81951 0.81531 1.16976 1.16882 1.16632 1.20824 1.00444 0.93227 0.90618 1.20987 0.91403 1.10092 0.99189 1.96798 1.68504 1.80893 1.47301 1.21143 0.98614 0.93467 0.98965 1.21084 0.97481 0.99791 0.92576 0.91160 0.90980 0.91161 0.91018 0.90918 0.91161 0.91163 0.90917 0.91017 0.85828 0.86079 0.90453 0.90445 0.82980 0.86128 0.77611 0.83403 0.86076 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.83 8.65 101.05 0.87 1.70 16 2 Si 1.06 -2.94 12.32 -169.99 -2.09 -5.04 16 3 C -0.45 0.88 8.53 101.05 0.86 1.74 16 4 C -0.45 0.88 8.53 101.05 0.86 1.74 16 5 C -0.36 0.19 4.59 -39.58 -0.18 0.01 16 6 C -0.09 0.01 9.29 -39.59 -0.37 -0.36 16 7 C -0.10 -0.05 9.70 -39.59 -0.38 -0.43 16 8 C -0.09 -0.05 5.51 -104.62 -0.58 -0.63 16 9 C 0.10 -0.05 4.87 36.01 0.18 0.12 16 10 O -0.29 -0.43 9.45 -19.46 -0.18 -0.62 16 11 C 0.20 0.25 6.68 -39.21 -0.26 -0.01 16 12 C -0.24 -0.09 9.02 -39.37 -0.35 -0.44 16 13 C 0.19 0.23 7.24 -39.44 -0.29 -0.06 16 14 F -0.12 -0.28 16.75 2.25 0.04 -0.25 16 15 C -0.19 -0.09 5.27 -104.53 -0.55 -0.64 16 16 C -0.07 0.02 2.45 36.01 0.09 0.11 16 17 O -0.53 -0.24 12.88 -35.23 -0.45 -0.70 16 18 Si 0.94 -0.92 25.49 -169.99 -4.33 -5.25 16 19 H -0.25 0.34 6.73 56.52 0.38 0.72 16 20 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 21 H -0.24 0.10 7.11 56.52 0.40 0.50 16 22 C -0.03 -0.01 8.39 -39.59 -0.33 -0.34 16 23 C -0.14 -0.21 6.24 -39.37 -0.25 -0.45 16 24 Br -0.02 -0.04 33.16 -68.01 -2.25 -2.30 16 25 C -0.10 -0.05 9.70 -39.59 -0.38 -0.43 16 26 C -0.09 0.01 9.29 -39.58 -0.37 -0.36 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.11 7.96 -51.92 -0.41 -0.53 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 34 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.12 -0.24 7.43 -52.48 -0.39 -0.63 16 37 H 0.12 -0.10 8.06 -52.49 -0.42 -0.53 16 38 H 0.08 -0.15 7.60 -51.93 -0.39 -0.55 16 39 H 0.08 -0.15 7.61 -51.92 -0.39 -0.54 16 40 H 0.15 -0.23 6.30 -52.49 -0.33 -0.56 16 41 H 0.12 -0.08 7.90 -51.93 -0.41 -0.49 16 42 H 0.38 -1.15 8.70 45.56 0.40 -0.76 16 43 H 0.15 -0.14 4.88 -52.49 -0.26 -0.40 16 44 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 45 H 0.12 -0.24 7.43 -52.48 -0.39 -0.63 16 LS Contribution 400.01 15.07 6.03 6.03 Total: 0.00 -5.59 400.01 -10.21 -15.80 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -5.53 Total: -8.95 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.43 Total: 1.26 kcal Atomic # 8 Polarization: -0.67 SS G_CDS: -0.64 Total: -1.31 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.04 Total: -0.25 kcal Atomic # 14 Polarization: -3.86 SS G_CDS: -6.43 Total: -10.29 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.25 Total: -2.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -5.59 -10.21 -15.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.210 kcal (2) G-P(sol) polarization free energy of solvation -5.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds