Wall clock time and date at job start Mon Mar 8 2021 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86308 * 109.46889 * 2 1 4 4 C 1.86296 * 109.47559 * 239.99946 * 2 1 3 5 5 C 1.86798 * 109.47086 * 119.99761 * 2 1 3 6 6 C 1.38231 * 120.00385 * 90.00348 * 5 2 1 7 7 C 1.38227 * 120.00750 * 180.02562 * 6 5 2 8 8 C 1.38236 * 119.99481 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99721 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47317 * 89.99895 * 9 8 7 11 11 C 1.35911 * 117.00286 * 179.97438 * 10 9 8 12 12 C 1.38643 * 120.04355 * 359.97438 * 11 10 9 13 13 C 1.38405 * 119.92732 * 180.02562 * 12 11 10 14 14 F 1.35097 * 119.98701 * 180.02562 * 13 12 11 15 15 C 1.38460 * 120.02010 * 359.97438 * 13 12 11 16 16 C 1.50703 * 119.94877 * 179.97438 * 15 13 12 17 17 O 1.42898 * 109.47560 * 284.99889 * 16 15 13 18 18 Si 1.86302 * 109.46600 * 165.00237 * 16 15 13 19 19 H 1.48500 * 109.47269 * 60.00156 * 18 16 15 20 20 H 1.48503 * 109.46982 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47283 * 299.99922 * 18 16 15 22 22 C 1.38254 * 120.09662 * 0.02562 * 15 13 12 23 23 C 1.38200 * 120.06458 * 359.97438 * 22 15 13 24 24 Br 1.89099 * 120.00801 * 179.97438 * 23 22 15 25 25 C 1.38229 * 120.00326 * 0.25048 * 8 7 6 26 26 C 1.38233 * 119.99834 * 359.48945 * 25 8 7 27 27 H 1.08998 * 109.47539 * 300.00137 * 1 2 3 28 28 H 1.09004 * 109.47417 * 60.00252 * 1 2 3 29 29 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47173 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46885 * 300.00074 * 3 2 1 32 32 H 1.08998 * 109.47142 * 59.99620 * 3 2 1 33 33 H 1.08997 * 109.46952 * 300.00417 * 4 2 1 34 34 H 1.09004 * 109.46918 * 59.99496 * 4 2 1 35 35 H 1.08998 * 109.47431 * 179.97438 * 4 2 1 36 36 H 1.08007 * 119.99787 * 359.97438 * 6 5 2 37 37 H 1.07994 * 120.00599 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47598 * 329.99977 * 9 8 7 39 39 H 1.09008 * 109.46986 * 209.99656 * 9 8 7 40 40 H 1.07998 * 120.03600 * 0.29450 * 12 11 10 41 41 H 1.09000 * 109.47252 * 45.00760 * 16 15 13 42 42 H 0.96695 * 114.00587 * 300.00683 * 17 16 15 43 43 H 1.07994 * 119.96848 * 179.97438 * 22 15 13 44 44 H 1.08003 * 120.00398 * 179.72674 * 25 8 7 45 45 H 1.08003 * 120.00208 * 180.23250 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7566 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8805 1.5252 6 6 2.7161 -2.2430 1.4911 7 6 3.1763 -2.8948 2.6199 8 6 3.4056 -2.1839 3.7831 9 6 3.9069 -2.8945 5.0139 10 8 5.3359 -2.8946 5.0153 11 6 5.9520 -3.4997 6.0647 12 6 5.1969 -4.0806 7.0720 13 6 5.8268 -4.6958 8.1399 14 9 5.0922 -5.2627 9.1218 15 6 7.2096 -4.7313 8.2016 16 6 7.8938 -5.4010 9.3654 17 8 7.7994 -4.5638 10.5196 18 14 9.6874 -5.6867 8.9505 19 1 10.3447 -4.3844 8.6725 20 1 10.3616 -6.3472 10.0970 21 1 9.7856 -6.5567 7.7511 22 6 7.9634 -4.1523 7.1977 23 6 7.3384 -3.5371 6.1297 24 35 8.3711 -2.7450 4.7578 25 6 3.1698 -0.8224 3.8190 26 6 2.7146 -0.1698 2.6886 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.5739 1.7566 -0.0005 31 1 2.1205 2.2704 -0.8900 32 1 2.1205 2.2704 0.8899 33 1 2.1207 -1.9058 -1.5211 34 1 2.1207 -0.3644 -2.4111 35 1 3.5741 -0.8778 -1.5213 36 1 2.5357 -2.7987 0.5827 37 1 3.3560 -3.9593 2.5933 38 1 3.5436 -3.9222 5.0135 39 1 3.5427 -2.3808 5.9037 40 1 4.1184 -4.0569 7.0212 41 1 7.4114 -6.3569 9.5694 42 1 8.2087 -3.6947 10.4097 43 1 9.0418 -4.1808 7.2481 44 1 3.3447 -0.2678 4.7291 45 1 2.5339 0.8947 2.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15096606_9276060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 13:59:45 Heat of formation + Delta-G solvation = -93.397373 kcal Electronic energy + Delta-G solvation = -27374.007784 eV Core-core repulsion = 23248.335507 eV Total energy + Delta-G solvation = -4125.672277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 412.042 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.18155 -41.61855 -40.12951 -39.09345 -37.37555 -33.59568 -33.05987 -32.11433 -31.88503 -30.16008 -29.44537 -28.30144 -28.27507 -27.74590 -26.35158 -24.25078 -23.49540 -22.75123 -22.02831 -19.96065 -18.75654 -18.22544 -17.44341 -17.40583 -17.25280 -16.91492 -16.55325 -16.10978 -15.88488 -15.63746 -15.55391 -15.40705 -15.07755 -14.44024 -14.34601 -14.17822 -14.05465 -13.95571 -13.89510 -13.71375 -13.57814 -13.31882 -13.14721 -13.12186 -12.97363 -12.95752 -12.52347 -12.39610 -12.30054 -12.17474 -11.86349 -11.80167 -11.74174 -11.32823 -10.93260 -10.78300 -10.76465 -10.52695 -10.16157 -9.80664 -9.70354 -9.46357 -0.39714 -0.20310 0.12689 0.46713 0.52212 1.07082 1.39651 1.49675 1.80873 1.85696 1.88013 2.01704 2.02811 2.17781 2.66165 2.87879 3.00341 3.24968 3.35230 3.54218 3.66918 3.71928 3.77280 3.97391 4.08990 4.21445 4.24468 4.26339 4.46834 4.52270 4.52966 4.60202 4.70679 4.79849 4.84185 4.84213 4.88077 4.88689 4.89021 4.90189 4.99627 5.15588 5.25072 5.39175 5.55692 5.58729 5.59066 5.67475 5.70188 5.93695 6.11744 6.64240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.371 4.371 6 C -0.104 4.104 7 C -0.119 4.119 8 C -0.103 4.103 9 C 0.093 3.907 10 O -0.299 6.299 11 C 0.190 3.810 12 C -0.239 4.239 13 C 0.176 3.824 14 F -0.128 7.128 15 C -0.188 4.188 16 C -0.077 4.077 17 O -0.549 6.549 18 Si 0.972 3.028 19 H -0.237 1.237 20 H -0.265 1.265 21 H -0.250 1.250 22 C -0.031 4.031 23 C -0.147 4.147 24 Br -0.029 7.029 25 C -0.119 4.119 26 C -0.104 4.104 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.169 0.831 41 H 0.121 0.879 42 H 0.391 0.609 43 H 0.161 0.839 44 H 0.129 0.871 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 1.173 -2.213 2.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.122 4.122 7 C -0.137 4.137 8 C -0.103 4.103 9 C 0.019 3.981 10 O -0.211 6.211 11 C 0.141 3.859 12 C -0.259 4.259 13 C 0.156 3.844 14 F -0.106 7.106 15 C -0.190 4.190 16 C -0.187 4.187 17 O -0.357 6.357 18 Si 0.794 3.206 19 H -0.160 1.160 20 H -0.190 1.190 21 H -0.174 1.174 22 C -0.050 4.050 23 C -0.227 4.227 24 Br 0.056 6.944 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.187 0.813 41 H 0.139 0.861 42 H 0.240 0.760 43 H 0.178 0.822 44 H 0.147 0.853 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.572 0.862 -2.768 2.955 hybrid contribution -0.748 0.016 0.706 1.028 sum -1.319 0.878 -2.062 2.600 Atomic orbital electron populations 1.26272 1.21424 1.04506 1.04603 0.77172 0.65266 0.64549 0.61642 1.26291 1.06336 1.19510 1.04880 1.26291 1.06337 1.08534 1.15859 1.28027 1.02287 0.99628 1.11140 1.21384 0.97415 0.95192 0.98232 1.21381 0.98956 1.00522 0.92880 1.19529 1.01584 0.94467 0.94709 1.21955 0.76893 1.01827 0.97428 1.86317 1.22705 1.71519 1.40585 1.18328 0.90389 0.90411 0.86769 1.21321 1.02496 1.06612 0.95470 1.17342 0.88613 0.93113 0.85363 1.91551 1.76974 1.81934 1.60114 1.20338 0.92350 1.06299 1.00054 1.24985 1.12098 0.96585 0.84985 1.86533 1.82697 1.31192 1.35250 0.85362 0.73261 0.81830 0.80133 1.15981 1.18983 1.17374 1.20935 1.01043 0.92843 0.90182 1.21130 0.91648 1.10571 0.99363 1.96780 1.68654 1.81103 1.47835 1.21382 0.98968 0.93756 0.99639 1.21388 0.97435 1.00732 0.92664 0.91340 0.90680 0.91339 0.91446 0.90668 0.90881 0.90881 0.90666 0.91445 0.84364 0.85344 0.89179 0.89208 0.81335 0.86117 0.75999 0.82221 0.85347 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.88 8.65 113.37 0.98 2.86 16 2 Si 1.13 -6.66 12.32 68.60 0.85 -5.82 16 3 C -0.46 1.96 8.53 113.37 0.97 2.93 16 4 C -0.46 1.96 8.53 113.37 0.97 2.93 16 5 C -0.37 0.39 4.59 22.27 0.10 0.49 16 6 C -0.10 0.00 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.17 9.70 22.27 0.22 0.05 16 8 C -0.10 -0.17 5.51 -19.87 -0.11 -0.28 16 9 C 0.09 -0.10 4.87 71.24 0.35 0.25 16 10 O -0.30 -0.99 9.45 -92.55 -0.87 -1.86 16 11 C 0.19 0.51 6.68 22.51 0.15 0.66 16 12 C -0.24 -0.15 9.02 22.41 0.20 0.05 16 13 C 0.18 0.44 7.24 22.36 0.16 0.60 16 14 F -0.13 -0.64 16.75 44.97 0.75 0.11 16 15 C -0.19 -0.17 5.27 -19.81 -0.10 -0.27 16 16 C -0.08 0.05 2.45 71.24 0.17 0.22 16 17 O -0.55 -0.47 12.88 -148.98 -1.92 -2.39 16 18 Si 0.97 -2.10 25.49 68.60 1.75 -0.35 16 19 H -0.24 0.89 6.73 99.48 0.67 1.56 16 20 H -0.27 -0.29 7.11 99.48 0.71 0.41 16 21 H -0.25 0.26 7.11 99.48 0.71 0.97 16 22 C -0.03 -0.02 8.39 22.26 0.19 0.17 16 23 C -0.15 -0.47 6.24 22.40 0.14 -0.33 16 24 Br -0.03 -0.12 33.16 -20.37 -0.68 -0.80 16 25 C -0.12 -0.17 9.70 22.27 0.22 0.05 16 26 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 29 H 0.07 -0.24 7.96 -2.38 -0.02 -0.26 16 30 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 31 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 32 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 33 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 34 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16 35 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 36 H 0.14 -0.54 7.43 -2.91 -0.02 -0.57 16 37 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.09 -0.37 7.60 -2.39 -0.02 -0.39 16 39 H 0.09 -0.36 7.61 -2.38 -0.02 -0.38 16 40 H 0.17 -0.60 6.30 -2.91 -0.02 -0.62 16 41 H 0.12 -0.12 7.90 -2.39 -0.02 -0.14 16 42 H 0.39 -2.48 8.70 -74.06 -0.64 -3.12 16 43 H 0.16 -0.38 4.88 -2.91 -0.01 -0.40 16 44 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 45 H 0.14 -0.54 7.43 -2.91 -0.02 -0.57 16 Total: 0.00 -12.69 400.01 5.98 -6.71 By element: Atomic # 1 Polarization: -7.46 SS G_CDS: 1.09 Total: -6.37 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 5.01 Total: 10.77 kcal Atomic # 8 Polarization: -1.46 SS G_CDS: -2.79 Total: -4.26 kcal Atomic # 9 Polarization: -0.64 SS G_CDS: 0.75 Total: 0.11 kcal Atomic # 14 Polarization: -8.76 SS G_CDS: 2.59 Total: -6.16 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.68 Total: -0.80 kcal Total: -12.69 5.98 -6.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15096606_9276060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.690 kcal (2) G-P(sol) polarization free energy of solvation -12.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds