Wall clock time and date at job start Mon Mar 8 2021 12:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86296 * 109.47370 * 2 1 4 4 C 1.50707 * 109.46916 * 119.99986 * 2 1 3 5 5 C 1.38703 * 120.01400 * 74.99521 * 4 2 1 6 6 O 1.35921 * 120.03573 * 0.02562 * 5 4 2 7 7 C 1.42905 * 117.00070 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47575 * 179.97438 * 7 6 5 9 9 H 1.08994 * 109.47035 * 179.97438 * 8 7 6 10 10 O 1.42963 * 109.46862 * 299.99621 * 8 7 6 11 11 C 1.43090 * 113.77109 * 178.78936 * 10 8 7 12 12 C 1.53251 * 108.94601 * 302.03420 * 11 10 8 13 13 H 1.09007 * 109.57607 * 294.58344 * 12 11 10 14 14 N 1.46500 * 109.57902 * 174.33074 * 12 11 10 15 15 C 1.34526 * 124.45609 * 299.69782 * 14 12 11 16 16 O 1.21453 * 125.71153 * 0.24319 * 15 14 12 17 17 C 1.47816 * 108.57895 * 180.26545 * 15 14 12 18 18 C 1.40938 * 105.88066 * 359.97438 * 17 15 14 19 19 C 1.38566 * 119.82414 * 179.97438 * 18 17 15 20 20 C 1.38615 * 119.71355 * 0.02562 * 19 18 17 21 21 C 1.38226 * 120.46444 * 359.97438 * 20 19 18 22 22 C 1.38570 * 134.29598 * 180.02562 * 17 15 14 23 23 C 1.34525 * 124.46523 * 119.99704 * 14 12 11 24 24 O 1.21448 * 125.70629 * 359.71349 * 23 14 12 25 25 C 1.53259 * 108.84497 * 54.51944 * 12 11 10 26 26 O 1.42968 * 109.46955 * 59.99418 * 8 7 6 27 27 C 1.38731 * 119.92546 * 180.27703 * 5 4 2 28 28 C 1.38206 * 119.94585 * 359.51649 * 27 5 4 29 29 Br 1.89098 * 119.99009 * 180.23503 * 28 27 5 30 30 C 1.38482 * 120.02415 * 0.46087 * 28 27 5 31 31 Cl 1.73593 * 119.96489 * 179.76712 * 30 28 27 32 32 C 1.38177 * 120.00725 * 255.02138 * 4 2 1 33 33 H 0.96704 * 114.00232 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47118 * 239.99033 * 2 1 3 35 35 H 1.48498 * 109.99746 * 179.97438 * 3 2 1 36 36 H 1.48502 * 109.99605 * 301.31656 * 3 2 1 37 37 H 1.08993 * 109.47407 * 59.99226 * 7 6 5 38 38 H 1.09005 * 109.46658 * 299.99913 * 7 6 5 39 39 H 1.09002 * 109.55893 * 182.18569 * 11 10 8 40 40 H 1.09006 * 109.55481 * 61.87114 * 11 10 8 41 41 H 1.07996 * 120.14307 * 179.97438 * 19 18 17 42 42 H 1.08002 * 119.76896 * 179.97438 * 20 19 18 43 43 H 1.07996 * 119.77416 * 180.02562 * 21 20 19 44 44 H 1.07993 * 120.14243 * 0.02562 * 22 17 15 45 45 H 1.09001 * 109.56049 * 65.31863 * 25 12 11 46 46 H 1.09005 * 109.56063 * 185.63909 * 25 12 11 47 47 H 1.07999 * 120.02677 * 179.75546 * 27 5 4 48 48 H 1.08000 * 119.97606 * 359.97438 * 32 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8694 -2.0940 1.3067 6 8 1.3562 -2.8101 0.2717 7 6 1.3230 -4.2311 0.4193 8 6 0.7165 -4.8604 -0.8365 9 1 0.6916 -5.9442 -0.7240 10 8 -0.6135 -4.3693 -1.0206 11 6 -1.2602 -4.8804 -2.1903 12 6 -0.4178 -4.5248 -3.4201 13 1 -0.4026 -3.4428 -3.5520 14 7 -0.9948 -5.1560 -4.6096 15 6 -1.1459 -6.4832 -4.7694 16 8 -0.8343 -7.3346 -3.9613 17 6 -1.7542 -6.7319 -6.0935 18 6 -1.9403 -5.4625 -6.6769 19 6 -2.5000 -5.3602 -7.9404 20 6 -2.8735 -6.5082 -8.6215 21 6 -2.6910 -7.7532 -8.0493 22 6 -2.1331 -7.8708 -6.7858 23 6 -1.4381 -4.4853 -5.6882 24 8 -1.4280 -3.2787 -5.8260 25 6 1.0102 -5.0390 -3.2075 26 8 1.5127 -4.5177 -1.9734 27 6 2.3270 -2.7457 2.4427 28 6 2.8528 -2.0160 3.4921 29 35 3.4831 -2.9036 5.0383 30 6 2.9141 -0.6348 3.4135 31 17 3.5693 0.2806 4.7350 32 6 2.4532 0.0164 2.2835 33 1 -0.3934 -0.8834 -0.0004 34 1 1.7923 -0.5140 -0.8899 35 1 3.5350 1.7700 0.0006 36 1 1.5355 2.4770 -1.1922 37 1 0.7157 -4.4923 1.2858 38 1 2.3370 -4.6055 0.5602 39 1 -2.2502 -4.4340 -2.2844 40 1 -1.3527 -5.9637 -2.1121 41 1 -2.6454 -4.3901 -8.3922 42 1 -3.3102 -6.4295 -9.6061 43 1 -2.9856 -8.6404 -8.5901 44 1 -1.9941 -8.8460 -6.3431 45 1 1.0038 -6.1283 -3.1680 46 1 1.6441 -4.7059 -4.0293 47 1 2.2759 -3.8227 2.5054 48 1 2.5014 1.0937 2.2241 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_7_15163260_13594088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:53:50 Heat of formation + Delta-G solvation = -119.518370 kcal Electronic energy + Delta-G solvation = -42056.304386 eV Core-core repulsion = 36310.763463 eV Total energy + Delta-G solvation = -5745.540923 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 510.005 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -43.74805 -41.90688 -41.18490 -39.99473 -39.55125 -39.03231 -37.94505 -37.28006 -37.18225 -37.12761 -34.61980 -33.91028 -32.19318 -32.02355 -31.34589 -30.85892 -29.71145 -27.54214 -26.58176 -26.38853 -25.65674 -24.79272 -23.52664 -23.30885 -22.74261 -22.33699 -21.04997 -19.60722 -19.18856 -19.01257 -18.82108 -18.48940 -18.23558 -17.70851 -17.66487 -17.40512 -17.08674 -16.82358 -16.80790 -16.49370 -16.20607 -16.00654 -15.87939 -15.60115 -15.52071 -15.36950 -15.25693 -15.09759 -14.94306 -14.85234 -14.81897 -14.68219 -14.18155 -13.83798 -13.83208 -13.67846 -13.31370 -13.09243 -12.97496 -12.72675 -12.65859 -12.50200 -12.37862 -12.33273 -12.26835 -12.19520 -11.73980 -11.67480 -11.59063 -11.45077 -11.30165 -11.21773 -11.01141 -10.90152 -10.28893 -10.27667 -10.16505 -9.40770 -4.98097 -1.14904 -0.42486 -0.16286 -0.09168 0.25174 0.83366 0.85243 0.96041 1.27032 1.55041 1.57609 1.76187 1.90278 2.07046 2.14755 2.22241 2.40875 2.54215 3.03253 3.10904 3.18082 3.31146 3.35366 3.44073 3.50590 3.60204 3.67175 3.71742 3.79958 3.87725 3.99368 4.00691 4.01567 4.05374 4.08161 4.11922 4.15242 4.18484 4.21810 4.22855 4.38564 4.42207 4.46973 4.50896 4.59400 4.77044 4.77599 4.84563 5.08612 5.15553 5.22221 5.29998 5.37191 5.62511 5.67953 5.88087 5.96689 6.30562 6.50076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.077 4.077 3 Si 0.801 3.199 4 C -0.127 4.127 5 C 0.152 3.848 6 O -0.300 6.300 7 C 0.066 3.934 8 C 0.238 3.762 9 H 0.108 0.892 10 O -0.380 6.380 11 C 0.053 3.947 12 C 0.076 3.924 13 H 0.114 0.886 14 N -0.569 5.569 15 C 0.577 3.423 16 O -0.479 6.479 17 C -0.159 4.159 18 C -0.160 4.160 19 C -0.045 4.045 20 C -0.084 4.084 21 C -0.084 4.084 22 C -0.042 4.042 23 C 0.575 3.425 24 O -0.490 6.490 25 C 0.052 3.948 26 O -0.385 6.385 27 C -0.167 4.167 28 C -0.052 4.052 29 Br -0.017 7.017 30 C -0.056 4.056 31 Cl -0.041 7.041 32 C -0.057 4.057 33 H 0.375 0.625 34 H 0.072 0.928 35 H -0.257 1.257 36 H -0.292 1.292 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.157 0.843 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.170 0.830 48 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -7.299 -5.484 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.185 4.185 3 Si 0.702 3.298 4 C -0.128 4.128 5 C 0.104 3.896 6 O -0.213 6.213 7 C -0.009 4.009 8 C 0.143 3.857 9 H 0.125 0.875 10 O -0.300 6.300 11 C -0.024 4.024 12 C -0.026 4.026 13 H 0.132 0.868 14 N -0.314 5.314 15 C 0.368 3.632 16 O -0.352 6.352 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.060 4.060 23 C 0.366 3.634 24 O -0.363 6.363 25 C -0.025 4.025 26 O -0.305 6.305 27 C -0.187 4.187 28 C -0.133 4.133 29 Br 0.069 6.931 30 C -0.085 4.085 31 Cl -0.012 7.012 32 C -0.076 4.076 33 H 0.223 0.777 34 H 0.090 0.910 35 H -0.183 1.183 36 H -0.219 1.219 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.193 0.807 43 H 0.194 0.806 44 H 0.175 0.825 45 H 0.095 0.905 46 H 0.128 0.872 47 H 0.187 0.813 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.303 -5.800 -4.752 7.844 hybrid contribution -0.047 -1.552 -0.810 1.751 sum -2.349 -7.352 -5.562 9.514 Atomic orbital electron populations 1.86691 1.16869 1.34146 1.97088 1.25496 0.84942 1.13613 0.94405 0.92427 0.77150 0.73939 0.86276 1.19811 1.03613 0.91114 0.98307 1.18794 0.93089 0.90749 0.86934 1.86204 1.76888 1.20147 1.38039 1.23281 1.03427 0.77841 0.96317 1.23927 0.78086 0.97674 0.86020 0.87504 1.88218 1.27807 1.71253 1.42694 1.22992 0.96479 1.00450 0.82475 1.22579 0.95417 1.00358 0.84286 0.86760 1.46465 1.57879 1.08946 1.18103 1.18710 0.76276 0.81009 0.87160 1.90792 1.47501 1.48208 1.48695 1.20454 1.05365 0.95876 0.94589 1.20427 1.05857 0.92749 0.97340 1.21161 0.93034 1.01630 0.90566 1.21958 0.95994 0.90906 1.01287 1.21975 0.94765 0.99861 0.93522 1.21173 0.93339 0.97498 0.94016 1.18809 0.75418 0.87267 0.81876 1.90832 1.52261 1.14550 1.78630 1.22993 0.92525 0.99412 0.87582 1.88229 1.49924 1.76979 1.15323 1.21327 1.03402 1.01907 0.92113 1.21701 1.03289 0.92806 0.95473 1.96842 1.86657 1.76706 1.32940 1.20666 1.04579 0.90683 0.92539 1.98411 1.84079 1.73255 1.45465 1.20870 0.95837 1.00947 0.89942 0.77670 0.91038 1.18263 1.21873 0.86736 0.87182 0.86875 0.90588 0.83022 0.80688 0.80557 0.82520 0.90484 0.87226 0.81292 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -3.35 12.65 -148.98 -1.89 -5.23 16 2 C -0.08 -0.34 2.33 71.24 0.17 -0.18 16 3 Si 0.80 1.94 30.17 68.60 2.07 4.01 16 4 C -0.13 -0.41 5.28 -19.77 -0.10 -0.52 16 5 C 0.15 0.34 6.62 22.50 0.15 0.49 16 6 O -0.30 -0.68 8.82 -73.08 -0.64 -1.32 16 7 C 0.07 -0.21 4.83 71.98 0.35 0.14 16 8 C 0.24 -0.09 3.59 71.98 0.26 0.17 16 9 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 10 O -0.38 -0.96 10.43 -121.89 -1.27 -2.23 16 11 C 0.05 0.08 6.33 72.07 0.46 0.53 16 12 C 0.08 0.22 3.08 45.16 0.14 0.36 16 13 H 0.11 0.66 7.59 -2.38 -0.02 0.64 16 14 N -0.57 -1.80 2.53 -739.56 -1.87 -3.67 16 15 C 0.58 1.53 7.35 86.82 0.64 2.16 16 16 O -0.48 -2.62 15.16 -3.57 -0.05 -2.67 16 17 C -0.16 0.13 6.40 -20.00 -0.13 0.00 16 18 C -0.16 -0.03 6.40 -20.00 -0.13 -0.16 16 19 C -0.05 0.23 10.09 22.44 0.23 0.45 16 20 C -0.08 0.86 10.03 22.36 0.22 1.09 16 21 C -0.08 0.90 10.04 22.36 0.22 1.12 16 22 C -0.04 0.26 10.09 22.44 0.23 0.49 16 23 C 0.58 2.94 8.02 86.82 0.70 3.64 16 24 O -0.49 -5.43 17.44 -3.55 -0.06 -5.49 16 25 C 0.05 0.11 6.32 72.07 0.46 0.56 16 26 O -0.39 -1.36 10.43 -121.89 -1.27 -2.63 16 27 C -0.17 -0.03 8.78 22.38 0.20 0.17 16 28 C -0.05 -0.13 6.22 22.32 0.14 0.01 16 29 Br -0.02 -0.04 32.52 -20.37 -0.66 -0.70 16 30 C -0.06 -0.18 6.32 22.35 0.14 -0.04 16 31 Cl -0.04 -0.14 27.73 -2.72 -0.08 -0.21 16 32 C -0.06 -0.11 8.44 22.28 0.19 0.08 16 33 H 0.37 1.34 8.60 -74.05 -0.64 0.71 16 34 H 0.07 0.43 7.83 -2.38 -0.02 0.42 16 35 H -0.26 -1.06 7.11 99.48 0.71 -0.35 16 36 H -0.29 -2.69 7.11 99.48 0.71 -1.98 16 37 H 0.11 -0.84 7.65 -2.39 -0.02 -0.86 16 38 H 0.11 -0.74 7.67 -2.38 -0.02 -0.75 16 39 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.08 0.10 6.71 -2.38 -0.02 0.08 16 41 H 0.15 -1.06 8.06 -2.91 -0.02 -1.08 16 42 H 0.18 -2.84 8.06 -2.91 -0.02 -2.86 16 43 H 0.18 -2.98 8.06 -2.91 -0.02 -3.01 16 44 H 0.16 -1.45 8.06 -2.91 -0.02 -1.47 16 45 H 0.08 0.13 6.63 -2.39 -0.02 0.12 16 46 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 47 H 0.17 -0.82 6.30 -2.91 -0.02 -0.84 16 48 H 0.17 -0.40 5.13 -2.91 -0.01 -0.41 16 Total: 0.00 -20.87 439.45 -0.73 -21.60 By element: Atomic # 1 Polarization: -12.50 SS G_CDS: 0.49 Total: -12.02 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.51 Total: 10.57 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -1.87 Total: -3.67 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -5.19 Total: -19.58 kcal Atomic # 14 Polarization: 1.94 SS G_CDS: 2.07 Total: 4.01 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.21 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -0.66 Total: -0.70 kcal Total: -20.87 -0.73 -21.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_7_15163260_13594088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.917 kcal (2) G-P(sol) polarization free energy of solvation -20.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds